Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0011645

Physical Location & Seq

Genomic Coordinates Forward (+)

7695529 .. 7705381

Gene Structure 9853 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1056200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGGGAGAGGAAAAATTGTGATTCGAAGGATTGACAATTCGACGAGCAGGCAAGTGACCTTTTCGAAGAGAAGAAATGGGTTGCTTAAGAAGGCTAAGGAGCTATCAATCCTTTGTGATGCTGAGGTTGGACTGATTATCTTCTCTACCACCGGCAGGCTTTACGATTATGCTAGCGCTAGCATGAAATCAGTTGTCGATCGTTTCAACAAACTGAAAGCAGAGCATCATCAACTGCTGAATCCTGCTGCAGAAGTCAAGTTTTGGCAAAGGGAGGCAGCAAGCTTGAGGCAACAATTGCGGTACTTGGAAGAATGCCACAGGCAGTTAATGGGGGAAGAACTTTCTGGTTTTAGTGCCAAAGATCTACAGAATTTGGAAAGCCAGCTGGAGATGAGTTTGAAAGGTGTCCGGACAAAAAAGAACCAGATATTTAATGATGAAATAAAAGAACTGAACCAGAAGGAAACTTTCATACATCAAGAAAATATAGAACTGTATAAGAAGCTAAACCTCATAAGTAATGAGAATGAGGAACTGCAAAAGAAGGTTTATGAAGCAAGGGAAGTGAATCGAGGAAACAAAAGTTCCCAGCCTCCATATAGCATCAGTAATGAATATGATTTGCATGCACCCATTCATCTGCAGCTAAGCCAGCCACAGAATCAGACTCAGCCTGGGCCTGGTCCTAAGAACAATGAAGTACCAGCAAAAGCAATATATAACCCCTCTAAAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

247

Amino Acids

28.29

Weight (kDa)

9.34

Isoelectric Point (pI)

48.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	2e-25	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	84 - 170	2.5e-27	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011645)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14210 AT2G14210
fragaria_vesca	FvH4_2g11352
malus_domestica	MD05G1049500.v1.1 MD10G1056100.v1.1 MD10G1056200.v1.1
prunus_persica	Prupe.8G073700_v2.0.a1 Prupe.8G073700_v2.0.a1 Prupe.8G073700_v2.0.a1
pyrus_communis	pycom05g04090 pycom10g04310 pycom10g04320
rosa_chinensis	RchiOBHm_Chr6g0269991
rosa_laevigata	RLG00000013823
rosa_multiflora	Rmu_sc0000893.1_g000023
rosa_roxburghii	Rroxscaffold_7G00198220
rosa_rugosa	Rorug06G0051800
rosa_samantha	Rh6AG170900 Rh6DG162500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	411
AciI	CCGC	1 cut(s)	301
AcsI	RAATTY	1 cut(s)	373
AfaI	GTAC	2 cut(s)	305, 705
AfeI	AGCGCT	1 cut(s)	178
AfiI	CCNNNNNNNGG	2 cut(s)	156, 683
AflII	CTTAAG	1 cut(s)	86
AgsI	TTSAA	2 cut(s)	208, 403
AjnI	CCWGG	2 cut(s)	676, 682
AluBI	AGCT	5 cut(s)	103, 285, 388, 508, 649
AluI	AGCT	5 cut(s)	103, 285, 388, 508, 649
Aor13HI	TCCGGA	1 cut(s)	411
Aor51HI	AGCGCT	1 cut(s)	178
AoxI	GGCC	1 cut(s)	680
ApeKI	GCWGC	3 cut(s)	248, 278, 646
ApoI	RAATTY	1 cut(s)	373
AspLEI	GCGC	1 cut(s)	179
AspS9I	GGNCC	2 cut(s)	680, 686
AsuII	TTCGAA	2 cut(s)	25, 65
AsuNHI	GCTAGC	2 cut(s)	173, 179
AvaII	GGWCC	1 cut(s)	686
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	3 cut(s)	235, 290, 658
BciT130I	CCWGG	2 cut(s)	678, 684
BfaI	CTAG	2 cut(s)	174, 180
BfmI	CTRYAG	3 cut(s)	249, 368, 644
BfoI	RGCGCY	1 cut(s)	180
BfrI	CTTAAG	1 cut(s)	86
BglII	AGATCT	1 cut(s)	364
BisI	GCNGC	3 cut(s)	249, 279, 647
BlpI	GCTNAGC	1 cut(s)	650
BlsI	GCNGC	3 cut(s)	250, 280, 648
Bme1390I	CCNGG	2 cut(s)	678, 684
Bme18I	GGWCC	1 cut(s)	686
BmgT120I	GGNCC	2 cut(s)	680, 686
BmrFI	CCNGG	2 cut(s)	678, 684
BmsI	GCATC	3 cut(s)	109, 235, 615
BmtI	GCTAGC	2 cut(s)	177, 183
BpmI	CTGGAG	1 cut(s)	410
Bpu10I	CCTNAGC	2 cut(s)	96, 123
Bpu1102I	GCTNAGC	1 cut(s)	650
Bpu14I	TTCGAA	2 cut(s)	25, 65
BpuEI	CTTGAG	1 cut(s)	307
BsaJI	CCNNGG	1 cut(s)	677
BsaWI	WCCGGW	1 cut(s)	411
Bsc4I	CCNNNNNNNGG	2 cut(s)	156, 683
Bse118I	RCCGGY	1 cut(s)	152
BseAI	TCCGGA	1 cut(s)	411
BseBI	CCWGG	2 cut(s)	678, 684
BseDI	CCNNGG	1 cut(s)	677
BseLI	CCNNNNNNNGG	2 cut(s)	156, 683
BseMII	CTCAG	2 cut(s)	114, 686
BseXI	GCAGC	3 cut(s)	235, 290, 658
BseYI	CCCAGC	1 cut(s)	591
Bsh1285I	CGRYCG	1 cut(s)	202
BshFI	GGCC	1 cut(s)	682
BsiEI	CGRYCG	1 cut(s)	202
BsiSI	CCGG	2 cut(s)	153, 412
BslI	CCNNNNNNNGG	2 cut(s)	156, 683
BsmI	GAATGC	1 cut(s)	320
BsnI	GGCC	1 cut(s)	682
Bsp119I	TTCGAA	2 cut(s)	25, 65
Bsp13I	TCCGGA	1 cut(s)	411
Bsp143I	GATC	2 cut(s)	199, 364
Bsp1720I	GCTNAGC	1 cut(s)	650
BspACI	CCGC	1 cut(s)	301
BspANI	GGCC	1 cut(s)	682
BspCNI	CTCAG	2 cut(s)	115, 685
BspEI	TCCGGA	1 cut(s)	411
BspMAI	CTGCAG	2 cut(s)	253, 648
BspOI	GCTAGC	2 cut(s)	177, 183
BspT104I	TTCGAA	2 cut(s)	25, 65
BspTI	CTTAAG	1 cut(s)	86
BsrFI	RCCGGY	1 cut(s)	152
BssAI	RCCGGY	1 cut(s)	152
BssECI	CCNNGG	1 cut(s)	677
BssMI	GATC	2 cut(s)	199, 364
Bst2UI	CCWGG	2 cut(s)	678, 684
Bst4CI	ACNGT	1 cut(s)	498
Bst6I	CTCTTC	1 cut(s)	62
BstAFI	CTTAAG	1 cut(s)	86
BstAPI	GCANNNNNTGC	1 cut(s)	298
BstBI	TTCGAA	2 cut(s)	25, 65
BstC8I	GCNNGC	8 cut(s)	50, 158, 175, 181, 283, 386, 630, 656
BstDEI	CTNAG	5 cut(s)	96, 123, 650, 672, 690
BstH2I	RGCGCY	1 cut(s)	180
BstHHI	GCGC	1 cut(s)	179
BstKTI	GATC	2 cut(s)	202, 367
BstMBI	GATC	2 cut(s)	199, 364
BstMCI	CGRYCG	1 cut(s)	202
BstMWI	GCNNNNNNNGC	2 cut(s)	298, 655
BstNI	CCWGG	2 cut(s)	678, 684
BstNSI	RCATGY	1 cut(s)	632
BstSCI	CCNGG	2 cut(s)	676, 682
BstSFI	CTRYAG	3 cut(s)	249, 368, 644
BstV1I	GCAGC	3 cut(s)	235, 290, 658
BstX2I	RGATCY	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	364
BsuRI	GGCC	1 cut(s)	682
Cac8I	GCNNGC	8 cut(s)	50, 158, 175, 181, 283, 386, 630, 656
CfoI	GCGC	1 cut(s)	179
Cfr10I	RCCGGY	1 cut(s)	152
Cfr13I	GGNCC	2 cut(s)	680, 686
Csp6I	GTAC	2 cut(s)	304, 704
CviAII	CATG	2 cut(s)	184, 629
CviQI	GTAC	2 cut(s)	304, 704
DdeI	CTNAG	5 cut(s)	96, 123, 650, 672, 690
DpnI	GATC	2 cut(s)	201, 366
DpnII	GATC	2 cut(s)	199, 364
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
Eco47I	GGWCC	1 cut(s)	686
Eco47III	AGCGCT	1 cut(s)	178
EcoRII	CCWGG	2 cut(s)	676, 682
FaeI	CATG	2 cut(s)	187, 632
FatI	CATG	2 cut(s)	183, 628
Fnu4HI	GCNGC	3 cut(s)	249, 279, 647
Fsp4HI	GCNGC	3 cut(s)	249, 279, 647
FspBI	CTAG	2 cut(s)	174, 180
GlaI	GCGC	1 cut(s)	178
GluI	GCNGC	3 cut(s)	249, 279, 647
GsaI	CCCAGC	1 cut(s)	595
GsuI	CTGGAG	1 cut(s)	410
HaeII	RGCGCY	1 cut(s)	180
HaeIII	GGCC	1 cut(s)	682
HapII	CCGG	2 cut(s)	153, 412
HhaI	GCGC	1 cut(s)	179
Hin1II	CATG	2 cut(s)	187, 632
Hin6I	GCGC	1 cut(s)	177
HinP1I	GCGC	1 cut(s)	177
HindIII	AAGCTT	1 cut(s)	283
HinfI	GANTC	5 cut(s)	22, 241, 571, 664, 670
HpaII	CCGG	2 cut(s)	153, 412
Hpy188I	TCNGA	1 cut(s)	669
Hpy188III	TCNNGA	2 cut(s)	412, 482
Hpy99I	CGWCG	1 cut(s)	46
HpyAV	CCTTC	4 cut(s)	21, 85, 457, 541
HpyCH4III	ACNGT	1 cut(s)	498
HpyCH4V	TGCA	5 cut(s)	251, 541, 628, 632, 646
HpyF10VI	GCNNNNNNNGC	2 cut(s)	298, 655
HpyF3I	CTNAG	5 cut(s)	96, 123, 650, 672, 690
Hsp92II	CATG	2 cut(s)	187, 632
HspAI	GCGC	1 cut(s)	177
Kpn2I	TCCGGA	1 cut(s)	411
Kzo9I	GATC	2 cut(s)	199, 364
LmnI	GCTCC	1 cut(s)	100
Lsp1109I	GCAGC	3 cut(s)	235, 290, 658
LweI	GCATC	3 cut(s)	109, 235, 615
MaeI	CTAG	2 cut(s)	174, 180
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	2 cut(s)	201, 366
MboI	GATC	2 cut(s)	199, 364
MboII	GAAGA	5 cut(s)	79, 84, 133, 323, 350
MfeI	CAATTG	1 cut(s)	296
MflI	RGATCY	1 cut(s)	364
MluCI	AATT	4 cut(s)	15, 37, 296, 373
MlyI	GAGTC	1 cut(s)	664
MmeI	TCCRAC	1 cut(s)	109
MnlI	CCTC	8 cut(s)	118, 268, 282, 524, 526, 569, 606, 739
MroI	TCCGGA	1 cut(s)	411
MseI	TTAA	3 cut(s)	87, 329, 435
MspA1I	CMGCKG	1 cut(s)	388
MspCI	CTTAAG	1 cut(s)	86
MspI	CCGG	2 cut(s)	153, 412
MspR9I	CCNGG	2 cut(s)	678, 684
MunI	CAATTG	1 cut(s)	296
Mva1269I	GAATGC	1 cut(s)	320
MvaI	CCWGG	2 cut(s)	678, 684
MwoI	GCNNNNNNNGC	2 cut(s)	298, 655
NdeII	GATC	2 cut(s)	199, 364
NheI	GCTAGC	2 cut(s)	173, 179
NlaIII	CATG	2 cut(s)	187, 632
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	1 cut(s)	632
NspV	TTCGAA	2 cut(s)	25, 65
PaeI	GCATGC	1 cut(s)	632
PctI	GAATGC	1 cut(s)	320
PfeI	GAWTC	4 cut(s)	22, 241, 571, 664
PkrI	GCNGC	3 cut(s)	250, 280, 648
Ple19I	CGATCG	1 cut(s)	202
PleI	GAGTC	1 cut(s)	664
PpsI	GAGTC	1 cut(s)	664
Psp6I	CCWGG	2 cut(s)	676, 682
PspFI	CCCAGC	1 cut(s)	591
PspGI	CCWGG	2 cut(s)	676, 682
PspPI	GGNCC	2 cut(s)	680, 686
PstI	CTGCAG	2 cut(s)	253, 648
PsuI	RGATCY	1 cut(s)	364
PvuI	CGATCG	1 cut(s)	202
PvuII	CAGCTG	1 cut(s)	388
RsaI	GTAC	2 cut(s)	305, 705
RsaNI	GTAC	2 cut(s)	304, 704
SaqAI	TTAA	3 cut(s)	87, 329, 435
SatI	GCNGC	3 cut(s)	249, 279, 647
Sau3AI	GATC	2 cut(s)	199, 364
Sau96I	GGNCC	2 cut(s)	680, 686
SchI	GAGTC	1 cut(s)	664
ScrFI	CCNGG	2 cut(s)	678, 684
SfaNI	GCATC	3 cut(s)	109, 235, 615
SfcI	CTRYAG	3 cut(s)	249, 368, 644
SfuI	TTCGAA	2 cut(s)	25, 65
SinI	GGWCC	1 cut(s)	686
SmlI	CTYRAG	2 cut(s)	86, 286
SmoI	CTYRAG	2 cut(s)	86, 286
SphI	GCATGC	1 cut(s)	632
Sse9I	AATT	4 cut(s)	15, 37, 296, 373
SsiI	CCGC	1 cut(s)	301
SspMI	CTAG	2 cut(s)	174, 180
StyD4I	CCNGG	2 cut(s)	676, 682
TaaI	ACNGT	1 cut(s)	498
TaqI	TCGA	5 cut(s)	25, 41, 65, 198, 574
TasI	AATT	4 cut(s)	15, 37, 296, 373
TfiI	GAWTC	4 cut(s)	22, 241, 571, 664
Tru1I	TTAA	3 cut(s)	87, 329, 435
Tru9I	TTAA	3 cut(s)	87, 329, 435
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	3 cut(s)	248, 278, 646
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	7 cut(s)	200, 456, 463, 570, 629, 630, 714
Vha464I	CTTAAG	1 cut(s)	86
VpaK11BI	GGWCC	1 cut(s)	686
XapI	RAATTY	1 cut(s)	373
XceI	RCATGY	1 cut(s)	632
XspI	CTAG	2 cut(s)	174, 180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.