Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007440

Physical Location & Seq

Genomic Coordinates Reverse (-)

6041146 .. 6043974

Gene Structure 2829 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G14260.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGAACTTGATCCTTGCATCGTTCTCTTTGGCCCCTTGCTTCTGTGTTCGATTCTTTCCTTCAAACCATAACAATCTCAATCTCTTATTCCCAGGGCAACGAAAGATTCAAGTTAGTTGCGGTGGTAAGAGTGAGGTGTTGAAGAGTGATACAATGGAACCTCATGAAGCAGAAACGTTTGTGAACAAGAGAACCCTTTATGCTCCCATTGAGCCATATAGCAGTGGAAATTTAAAGGTTTCAGATGTTCACACTCTCTACTGGGAGCAATCAGGCAAACCCGATGGACACCCGGTTGTTTTTCTTCACGGCGGGCCGGGAGGAGGGACGGCTCCTAGTAATAGGAGATTCTTCGATCCGGAGTTTTATCGGATTGTTCTGTTTGATCAGAGAGGTGCGGGGAAGAGTACACCGCATGCTTGTTTGGAGGAAAACACCACATGGGACCTTGTGAATGATATTGAAAAACTAAGAGAACATTTGAAAATACCTGAATGGCTGGTTTTTGGAGGATCATGGGGAAGCACTCTAGCTCTTGCATACAGTCAGTCTCACCCTGACAAGGTTACTGGTTTGGTCCTTAGAGGGATCTTTTTGTTGCGTAAAAAGGAGATTGACTGGTTTTACGAGGGCGGTGCTGCTGCTATTTACCCTGATGCTTGGGAGGAGTTCAGAGATCTTATTCCAGAAAACGAGAGAGGTAGTAGCCTTGTGGACGCGTATCACAAAAGATTGAATTCTGATGATCTGGAAATTCAATACGCAGCTGCAAGAGCTTGGACTAAATGGGAAATGATGACTGCTTATCTTCGTCCAAATCTTGAAAACGTTCAAAAGGCAGAGGATGATAAATTTTCATTGGCGTTTGCAAGGATTGAAAATCACTACTTTGTTAACAAAGGTTTCTTCCCGTCGGACTCACACTTGCTAGACAATGTTGATAAAATACGACATATCAAGACCACCATTGTTCAGGGAAGGTATGACGTATGCTGTCCTATGATGTCTGCTTGGGATCTGCACAAAGCATGGCCAGAGGCAGAACTCAAGATTGTTTATGATGCTGGGCACTCGGCAAATGAGCCAGGAATATCAGCGGAACTCGTGGTTGCCAATGAAAAGATGAAAGCACTTATGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00330 map00330

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

380

Amino Acids

43.06

Weight (kDa)

5.88

Isoelectric Point (pI)

41.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	47 - 310	5.9e-32	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	48 - 310	5.2e-09	Alpha/beta hydrolase family
Hydrolase_4	PF12146	72 - 294	1.1e-09	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14260 AT2G14260 AT2G14260 AT2G14260
fragaria_vesca	FvH4_2g02550
malus_domestica	MD10G1115000.v1.1
prunus_persica	Prupe.8G157100_v2.0.a1 Prupe.8G157100_v2.0.a1
pyrus_communis	pycom05g10790 pycom10g09950 pycom15g16330
rosa_chinensis	RchiOBHm_Chr6g0246361
rosa_laevigata	RLG00000015261
rosa_multiflora	Rmu_co8135098.1_g000001 Rmu_sc0001066.1_g000006 Rmu_sc0008965.1_g000003
rosa_roxburghii	Rroxscaffold_7G00214650
rosa_rugosa	Rorug05G0520500
rosa_samantha	Rh6AG034700 Rh6BG029800 Rh6CG030200 Rh6CG067300 Rh6DG029100
rosa_wichuraiana	Rw6G002810 Rw6G002970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	719
AccIII	TCCGGA	1 cut(s)	358
AciI	CCGC	6 cut(s)	120, 312, 398, 413, 633, 1097
AclI	AACGTT	2 cut(s)	176, 828
AclWI	GGATC	5 cut(s)	4, 350, 520, 596, 1023
AcoI	YGGCCR	1 cut(s)	1031
AcsI	RAATTY	4 cut(s)	229, 736, 753, 851
AfaI	GTAC	1 cut(s)	409
AfiI	CCNNNNNNNGG	2 cut(s)	323, 562
AflIII	ACRYGT	1 cut(s)	717
AjnI	CCWGG	2 cut(s)	91, 1084
AluBI	AGCT	3 cut(s)	533, 767, 776
AluI	AGCT	3 cut(s)	533, 767, 776
Alw26I	GTCTC	1 cut(s)	555
AlwI	GGATC	5 cut(s)	4, 350, 520, 596, 1023
Aor13HI	TCCGGA	1 cut(s)	358
AoxI	GGCC	3 cut(s)	30, 314, 1031
ApeKI	GCWGC	4 cut(s)	638, 641, 764, 767
ApoI	RAATTY	4 cut(s)	229, 736, 753, 851
Asp700I	GAANNNNTTC	1 cut(s)	828
AspS9I	GGNCC	4 cut(s)	31, 314, 445, 577
AsuC2I	CCSGG	2 cut(s)	293, 318
AsuHPI	GGTGA	1 cut(s)	545
AvaII	GGWCC	2 cut(s)	445, 577
BaeGI	GKGCMC	1 cut(s)	1071
BalI	TGGCCA	1 cut(s)	1033
BauI	CACGAG	1 cut(s)	1103
BbvI	GCAGC	4 cut(s)	625, 628, 754, 776
BccI	CCATC	1 cut(s)	278
BceAI	ACGGC	2 cut(s)	325, 345
BcgI	CGANNNNNNTGC	2 cut(s)	617, 651
BciT130I	CCWGG	2 cut(s)	93, 1086
BclI	TGATCA	1 cut(s)	385
BcnI	CCSGG	2 cut(s)	293, 318
BcoDI	GTCTC	1 cut(s)	555
BfaI	CTAG	3 cut(s)	336, 530, 929
BglII	AGATCT	1 cut(s)	676
BisI	GCNGC	4 cut(s)	639, 642, 765, 768
BlsI	GCNGC	4 cut(s)	640, 643, 766, 769
Bme1390I	CCNGG	4 cut(s)	93, 293, 318, 1086
Bme18I	GGWCC	2 cut(s)	445, 577
BmgT120I	GGNCC	4 cut(s)	31, 314, 445, 577
BmiI	GGNNCC	4 cut(s)	33, 159, 333, 446
BmrFI	CCNGG	4 cut(s)	93, 293, 318, 1086
BmrI	ACTGGG	1 cut(s)	271
BmsI	GCATC	3 cut(s)	26, 646, 1051
BmuI	ACTGGG	1 cut(s)	271
BpuEI	CTTGAG	1 cut(s)	1031
BpuMI	CCSGG	2 cut(s)	293, 318
BsaJI	CCNNGG	2 cut(s)	91, 92
BsaWI	WCCGGW	1 cut(s)	358
Bsc4I	CCNNNNNNNGG	2 cut(s)	323, 562
Bse1I	ACTGG	3 cut(s)	266, 574, 623
BseAI	TCCGGA	1 cut(s)	358
BseBI	CCWGG	2 cut(s)	93, 1086
BseDI	CCNNGG	2 cut(s)	91, 92
BseGI	GGATG	1 cut(s)	850
BseLI	CCNNNNNNNGG	2 cut(s)	323, 562
BseNI	ACTGG	3 cut(s)	266, 574, 623
BseRI	GAGGAG	2 cut(s)	336, 680
BseSI	GKGCMC	1 cut(s)	1071
BseXI	GCAGC	4 cut(s)	625, 628, 754, 776
BseYI	CCCAGC	1 cut(s)	1064
BsgI	GTGCAG	1 cut(s)	1004
Bsh1236I	CGCG	1 cut(s)	719
BshFI	GGCC	3 cut(s)	32, 316, 1033
BsiSI	CCGG	3 cut(s)	293, 317, 359
BslFI	GGGAC	2 cut(s)	340, 458
BslI	CCNNNNNNNGG	2 cut(s)	323, 562
BsmAI	GTCTC	1 cut(s)	555
BsmFI	GGGAC	2 cut(s)	340, 458
BsnI	GGCC	3 cut(s)	32, 316, 1033
Bsp1286I	GDGCHC	1 cut(s)	1071
Bsp13I	TCCGGA	1 cut(s)	358
Bsp143I	GATC	8 cut(s)	9, 355, 385, 512, 588, 676, 745, 1015
BspACI	CCGC	6 cut(s)	120, 312, 398, 413, 633, 1097
BspANI	GGCC	3 cut(s)	32, 316, 1033
BspEI	TCCGGA	1 cut(s)	358
BspFNI	CGCG	1 cut(s)	719
BspHI	TCATGA	1 cut(s)	163
BspLI	GGNNCC	4 cut(s)	33, 159, 333, 446
BspPI	GGATC	5 cut(s)	4, 350, 520, 596, 1023
BsrI	ACTGG	3 cut(s)	266, 574, 623
BssECI	CCNNGG	2 cut(s)	91, 92
BssMI	GATC	8 cut(s)	9, 355, 385, 512, 588, 676, 745, 1015
BssSI	CACGAG	1 cut(s)	1103
Bst2BI	CACGAG	1 cut(s)	1103
Bst2UI	CCWGG	2 cut(s)	93, 1086
Bst4CI	ACNGT	1 cut(s)	545
Bst6I	CTCTTC	2 cut(s)	137, 398
BstC8I	GCNNGC	2 cut(s)	314, 417
BstDEI	CTNAG	2 cut(s)	470, 581
BstF5I	GGATG	1 cut(s)	850
BstFNI	CGCG	1 cut(s)	719
BstKTI	GATC	8 cut(s)	12, 358, 388, 515, 591, 679, 748, 1018
BstMAI	GTCTC	1 cut(s)	555
BstMBI	GATC	8 cut(s)	9, 355, 385, 512, 588, 676, 745, 1015
BstMWI	GCNNNNNNNGC	1 cut(s)	773
BstNI	CCWGG	2 cut(s)	93, 1086
BstNSI	RCATGY	1 cut(s)	419
BstSCI	CCNGG	4 cut(s)	91, 291, 316, 1084
BstSLI	GKGCMC	1 cut(s)	1071
BstUI	CGCG	1 cut(s)	719
BstV1I	GCAGC	4 cut(s)	625, 628, 754, 776
BstX2I	RGATCY	3 cut(s)	588, 676, 1015
BstYI	RGATCY	3 cut(s)	588, 676, 1015
BsuRI	GGCC	3 cut(s)	32, 316, 1033
BtsCI	GGATG	1 cut(s)	850
BtsI	GCAGTG	1 cut(s)	229
BtsIMutI	CAGTG	1 cut(s)	229
Cac8I	GCNNGC	2 cut(s)	314, 417
CciI	TCATGA	1 cut(s)	163
Cfr13I	GGNCC	4 cut(s)	31, 314, 445, 577
CseI	GACGC	1 cut(s)	725
Csp6I	GTAC	1 cut(s)	408
CviAII	CATG	5 cut(s)	164, 416, 441, 516, 1029
CviQI	GTAC	1 cut(s)	408
DdeI	CTNAG	2 cut(s)	470, 581
DpnI	GATC	8 cut(s)	11, 357, 387, 514, 590, 678, 747, 1017
DpnII	GATC	8 cut(s)	9, 355, 385, 512, 588, 676, 745, 1015
DraI	TTTAAA	1 cut(s)	234
EaeI	YGGCCR	1 cut(s)	1031
Eam1104I	CTCTTC	2 cut(s)	137, 398
EarI	CTCTTC	2 cut(s)	137, 398
Eco47I	GGWCC	2 cut(s)	445, 577
EcoO109I	RGGNCCY	1 cut(s)	445
EcoRI	GAATTC	1 cut(s)	736
EcoRII	CCWGG	2 cut(s)	91, 1084
FaeI	CATG	5 cut(s)	167, 419, 444, 519, 1032
FaqI	GGGAC	2 cut(s)	340, 458
FatI	CATG	5 cut(s)	163, 415, 440, 515, 1028
FauI	CCCGC	2 cut(s)	305, 391
FbaI	TGATCA	1 cut(s)	385
Fnu4HI	GCNGC	4 cut(s)	639, 642, 765, 768
FokI	GGATG	1 cut(s)	857
Fsp4HI	GCNGC	4 cut(s)	639, 642, 765, 768
FspBI	CTAG	3 cut(s)	336, 530, 929
GluI	GCNGC	4 cut(s)	639, 642, 765, 768
GsaI	CCCAGC	1 cut(s)	1068
HaeIII	GGCC	3 cut(s)	32, 316, 1033
HapII	CCGG	3 cut(s)	293, 317, 359
HgaI	GACGC	1 cut(s)	725
Hin1II	CATG	5 cut(s)	167, 419, 444, 519, 1032
HincII	GTYRAC	1 cut(s)	895
HindII	GTYRAC	1 cut(s)	895
HinfI	GANTC	4 cut(s)	51, 106, 348, 917
HpaI	GTTAAC	1 cut(s)	895
HpaII	CCGG	3 cut(s)	293, 317, 359
HphI	GGTGA	1 cut(s)	545
Hpy166II	GTNNAC	5 cut(s)	184, 250, 410, 715, 895
Hpy188I	TCNGA	6 cut(s)	244, 372, 390, 674, 742, 916
Hpy188III	TCNNGA	7 cut(s)	164, 359, 686, 749, 821, 958, 1048
Hpy8I	GTNNAC	5 cut(s)	184, 250, 410, 715, 895
Hpy99I	CGWCG	1 cut(s)	916
HpyAV	CCTTC	2 cut(s)	69, 972
HpyCH4III	ACNGT	1 cut(s)	545
HpyCH4IV	ACGT	3 cut(s)	176, 828, 987
HpyCH4V	TGCA	5 cut(s)	17, 539, 770, 869, 1021
HpyF10VI	GCNNNNNNNGC	1 cut(s)	773
HpyF3I	CTNAG	2 cut(s)	470, 581
HpySE526I	ACGT	3 cut(s)	176, 828, 987
Hsp92II	CATG	5 cut(s)	167, 419, 444, 519, 1032
Kpn2I	TCCGGA	1 cut(s)	358
Ksp22I	TGATCA	1 cut(s)	385
KspAI	GTTAAC	1 cut(s)	895
Kzo9I	GATC	8 cut(s)	9, 355, 385, 512, 588, 676, 745, 1015
LmnI	GCTCC	3 cut(s)	208, 265, 337
Lsp1109I	GCAGC	4 cut(s)	625, 628, 754, 776
LweI	GCATC	3 cut(s)	26, 646, 1051
MaeI	CTAG	3 cut(s)	336, 530, 929
MaeII	ACGT	3 cut(s)	176, 828, 987
MaeIII	GTNAC	1 cut(s)	565
MalI	GATC	8 cut(s)	11, 357, 387, 514, 590, 678, 747, 1017
MboI	GATC	8 cut(s)	9, 355, 385, 512, 588, 676, 745, 1015
MboII	GAAGA	6 cut(s)	154, 296, 343, 415, 800, 898
MflI	RGATCY	3 cut(s)	588, 676, 1015
MhlI	GDGCHC	1 cut(s)	1071
MlsI	TGGCCA	1 cut(s)	1033
MluCI	AATT	4 cut(s)	229, 736, 753, 851
MluI	ACGCGT	1 cut(s)	717
MluNI	TGGCCA	1 cut(s)	1033
MlyI	GAGTC	1 cut(s)	911
MmeI	TCCRAC	1 cut(s)	894
Mox20I	TGGCCA	1 cut(s)	1033
MroI	TCCGGA	1 cut(s)	358
MroXI	GAANNNNTTC	1 cut(s)	828
MscI	TGGCCA	1 cut(s)	1033
MseI	TTAA	2 cut(s)	233, 894
Msp20I	TGGCCA	1 cut(s)	1033
MspA1I	CMGCKG	2 cut(s)	767, 1097
MspI	CCGG	3 cut(s)	293, 317, 359
MspR9I	CCNGG	4 cut(s)	93, 293, 318, 1086
MvaI	CCWGG	2 cut(s)	93, 1086
MvnI	CGCG	1 cut(s)	719
MwoI	GCNNNNNNNGC	1 cut(s)	773
NciI	CCSGG	2 cut(s)	293, 318
NdeII	GATC	8 cut(s)	9, 355, 385, 512, 588, 676, 745, 1015
NlaIII	CATG	5 cut(s)	167, 419, 444, 519, 1032
NlaIV	GGNNCC	4 cut(s)	33, 159, 333, 446
NmeAIII	GCCGAG	1 cut(s)	1052
NspI	RCATGY	1 cut(s)	419
PaeI	GCATGC	1 cut(s)	419
PagI	TCATGA	1 cut(s)	163
PasI	CCCWGGG	1 cut(s)	92
PdmI	GAANNNNTTC	1 cut(s)	828
PfeI	GAWTC	3 cut(s)	51, 106, 348
PkrI	GCNGC	4 cut(s)	640, 643, 766, 769
PleI	GAGTC	1 cut(s)	911
PpsI	GAGTC	1 cut(s)	911
PpuMI	RGGWCCY	1 cut(s)	445
Psp1406I	AACGTT	2 cut(s)	176, 828
Psp5II	RGGWCCY	1 cut(s)	445
Psp6I	CCWGG	2 cut(s)	91, 1084
PspFI	CCCAGC	1 cut(s)	1064
PspGI	CCWGG	2 cut(s)	91, 1084
PspN4I	GGNNCC	4 cut(s)	33, 159, 333, 446
PspPI	GGNCC	4 cut(s)	31, 314, 445, 577
PspPPI	RGGWCCY	1 cut(s)	445
PsuI	RGATCY	3 cut(s)	588, 676, 1015
PvuII	CAGCTG	1 cut(s)	767
RsaI	GTAC	1 cut(s)	409
RsaNI	GTAC	1 cut(s)	408
SaqAI	TTAA	2 cut(s)	233, 894
SatI	GCNGC	4 cut(s)	639, 642, 765, 768
Sau3AI	GATC	8 cut(s)	9, 355, 385, 512, 588, 676, 745, 1015
Sau96I	GGNCC	4 cut(s)	31, 314, 445, 577
SchI	GAGTC	1 cut(s)	911
ScrFI	CCNGG	4 cut(s)	93, 293, 318, 1086
SduI	GDGCHC	1 cut(s)	1071
SfaNI	GCATC	3 cut(s)	26, 646, 1051
SinI	GGWCC	2 cut(s)	445, 577
SmlI	CTYRAG	1 cut(s)	1046
SmoI	CTYRAG	1 cut(s)	1046
SphI	GCATGC	1 cut(s)	419
Sse9I	AATT	4 cut(s)	229, 736, 753, 851
SsiI	CCGC	6 cut(s)	120, 312, 398, 413, 633, 1097
SspMI	CTAG	3 cut(s)	336, 530, 929
StyD4I	CCNGG	4 cut(s)	91, 291, 316, 1084
TaaI	ACNGT	1 cut(s)	545
TaiI	ACGT	3 cut(s)	179, 831, 990
TaqI	TCGA	2 cut(s)	49, 354
TasI	AATT	4 cut(s)	229, 736, 753, 851
TatI	WGTACW	1 cut(s)	407
TfiI	GAWTC	3 cut(s)	51, 106, 348
Tru1I	TTAA	2 cut(s)	233, 894
Tru9I	TTAA	2 cut(s)	233, 894
TscAI	CASTG	1 cut(s)	229
TseI	GCWGC	4 cut(s)	638, 641, 764, 767
TspDTI	ATGAA	5 cut(s)	17, 180, 846, 1131, 1139
TspRI	CASTG	1 cut(s)	229
VpaK11BI	GGWCC	2 cut(s)	445, 577
XapI	RAATTY	4 cut(s)	229, 736, 753, 851
XceI	RCATGY	1 cut(s)	419
XmnI	GAANNNNTTC	1 cut(s)	828
XspI	CTAG	3 cut(s)	336, 530, 929

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.