Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0007440

Physical Location & Seq

Genomic Coordinates Forward (+)

4492249 .. 4497484

Gene Structure 5236 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G002810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGACTAGGTTAGTGACCTTGGGATTCTCCCCAAATTCCTTTTCTTCCCCACCCTTCCTTCCCTTAATCTCCACCACCTCCTCCCATTTTCAACTCCCTTCCTCCTCCTCCTTCTCCAAGCTCACTGCTTCAGGGAAGAGTAATTTGGTTCTACGTGGTTGCAAGACCGAGACGAAGCTACGAGATTCCATGGAATCGGAGAAGGAATTGCCGGAGTTCAATAGAGAGCTGTATCCGAGTATTGAGCCTTACAGCTCCGGCTTTCTCAAGGTCTCGGATATTCACTCAATCTATTGGGAGCAGTCCGGAAATCCCAACGGCCATCCTGTTATATTTCTTCATGGGGGTCCAGGAGGTGGAACTTGCCCAAATAATCGAACATTCTTTGATCCTGAGTTTTACAGAATCATCCTATTTGATCAGCGAGGTTCAGGGAAAAGTACTCCACATGCTTGCTTGGAAGAAAACACCACATGGGATCTCATTAGTGACATTGAAAAGCTCAGAGAACACCTGGAAATTCCAGAATGGCAGGTTTTTGGTGGGTCTTGGGGGAGTACCCTTGCCCTTGCATATAGCCAATCACACCCTGAGAAGGTTACTGGCATGGTCCTGAGAGGGATTTTTCTCTTAAGAAAGAAAGAGATTGATTGGTTTTATGAGGGTGGTGCTGCTGCCATATACCCTGATGCTTGGGAGCAGTTTCGTGATCTGATTCCAGAAAATGAGCGGGGAAGTTTTCTTGATGCTTATAGGAAGAGATTAAATTCCGATGATAAGGAAATACAATTTGCAGCTGCTAGAGCATGGACAATGTGGGAAATGATGACTGCACATCTCCTTCCAAATGACGAGAACATCAAGAGGGGGGAAGACGATATTTTTGCATTGGCATTTGCCAGGATTGAAAATCATTACTTTGTGAACAGAGGATTCTTTCCTTCAGATGCATACCTGTTAGATAACGTCGAAAAGATAAGGCATATAAAAACTACAATCGTACAGGGACGATATGATGTTTGCTGTCCCATGATGTCAGCGTGGGATCTCCATAAAGCATGGCCAGAAGCTGATCTCAAGGTAATTCAAGATGCAGGACATTCTGCTAATGAACCAGGAATAGCTGCAGAGCTTGTGGCGGCAAATGAGAAGCTGAAACACATAAAAATTGGAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00330 map00330

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

392

Amino Acids

44.36

Weight (kDa)

5.66

Isoelectric Point (pI)

42.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	109 - 371	2.4e-31	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	110 - 371	6.7e-09	Alpha/beta hydrolase family
Hydrolase_4	PF12146	134 - 221	1.1e-07	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14260 AT2G14260 AT2G14260 AT2G14260
fragaria_vesca	FvH4_2g02550
malus_domestica	MD10G1115000.v1.1
prunus_persica	Prupe.8G157100_v2.0.a1 Prupe.8G157100_v2.0.a1
pyrus_communis	pycom05g10790 pycom10g09950 pycom15g16330
rosa_chinensis	RchiOBHm_Chr6g0246361
rosa_laevigata	RLG00000015261
rosa_multiflora	Rmu_co8135098.1_g000001 Rmu_sc0001066.1_g000006 Rmu_sc0008965.1_g000003
rosa_roxburghii	Rroxscaffold_7G00214650
rosa_rugosa	Rorug05G0520500
rosa_samantha	Rh6AG034700 Rh6BG029800 Rh6CG030200 Rh6CG067300 Rh6DG029100
rosa_wichuraiana	Rw6G002810 Rw6G002970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	523
AccB7I	CCANNNNNTGG	1 cut(s)	356
AccBSI	CCGCTC	1 cut(s)	730
AccIII	TCCGGA	1 cut(s)	305
AciI	CCGC	2 cut(s)	730, 1139
AclWI	GGATC	3 cut(s)	383, 486, 1053
AcoI	YGGCCR	2 cut(s)	319, 1061
AcsI	RAATTY	3 cut(s)	34, 519, 766
AcuI	CTGAAG	2 cut(s)	114, 927
AfaI	GTAC	3 cut(s)	442, 559, 1002
AfiI	CCNNNNNNNGG	2 cut(s)	356, 595
AflII	CTTAAG	1 cut(s)	631
AgsI	TTSAA	5 cut(s)	92, 220, 497, 908, 1088
AjnI	CCWGG	4 cut(s)	349, 513, 899, 1114
AjuI	GAANNNNNNNTTGG	4 cut(s)	25, 57, 128, 160
Alw26I	GTCTC	2 cut(s)	164, 277
AlwI	GGATC	3 cut(s)	383, 486, 1053
AlwNI	CAGNNNCTG	1 cut(s)	1070
Aor13HI	TCCGGA	1 cut(s)	305
AoxI	GGCC	2 cut(s)	319, 1061
ApeKI	GCWGC	5 cut(s)	671, 674, 794, 797, 1124
ApoI	RAATTY	3 cut(s)	34, 519, 766
ArsI	GACNNNNNNTTYG	2 cut(s)	866, 898
AspS9I	GGNCC	2 cut(s)	347, 610
AvaII	GGWCC	2 cut(s)	347, 610
BalI	TGGCCA	1 cut(s)	1063
BbsI	GAAGAC	1 cut(s)	879
BbvI	GCAGC	5 cut(s)	658, 661, 784, 806, 1111
BccI	CCATC	1 cut(s)	330
BceAI	ACGGC	1 cut(s)	334
BcgI	CGANNNNNNTGC	2 cut(s)	866, 900
BciT130I	CCWGG	4 cut(s)	351, 515, 901, 1116
BciVI	GTATCC	1 cut(s)	243
BclI	TGATCA	1 cut(s)	418
BcoDI	GTCTC	2 cut(s)	164, 277
BfaI	CTAG	2 cut(s)	6, 801
BfmI	CTRYAG	1 cut(s)	1125
BfrI	CTTAAG	1 cut(s)	631
BfuAI	ACCTGC	1 cut(s)	523
BfuI	GTATCC	1 cut(s)	243
BisI	GCNGC	6 cut(s)	672, 675, 795, 798, 1125, 1140
BlsI	GCNGC	6 cut(s)	673, 676, 796, 799, 1126, 1141
BmcAI	AGTACT	1 cut(s)	442
Bme1390I	CCNGG	4 cut(s)	351, 515, 901, 1116
Bme18I	GGWCC	2 cut(s)	347, 610
BmgT120I	GGNCC	2 cut(s)	347, 610
BmiI	GGNNCC	1 cut(s)	348
BmrFI	CCNGG	4 cut(s)	351, 515, 901, 1116
BmsI	GCATC	4 cut(s)	679, 736, 937, 1081
BpiI	GAAGAC	1 cut(s)	879
BpuEI	CTTGAG	2 cut(s)	251, 1061
BsaAI	YACGTR	1 cut(s)	155
BsaI	GGTCTC	1 cut(s)	277
BsaJI	CCNNGG	2 cut(s)	18, 189
BsaWI	WCCGGW	1 cut(s)	305
Bsc4I	CCNNNNNNNGG	2 cut(s)	356, 595
Bse1I	ACTGG	1 cut(s)	607
BseAI	TCCGGA	1 cut(s)	305
BseBI	CCWGG	4 cut(s)	351, 515, 901, 1116
BseDI	CCNNGG	2 cut(s)	18, 189
BseGI	GGATG	2 cut(s)	322, 408
BseLI	CCNNNNNNNGG	2 cut(s)	356, 595
BseMII	CTCAG	4 cut(s)	384, 517, 582, 605
BseNI	ACTGG	1 cut(s)	607
BseRI	GAGGAG	3 cut(s)	70, 94, 97
BseXI	GCAGC	5 cut(s)	658, 661, 784, 806, 1111
BsgI	GTGCAG	1 cut(s)	816
BshFI	GGCC	2 cut(s)	321, 1063
BsiSI	CCGG	3 cut(s)	212, 258, 306
BslFI	GGGAC	2 cut(s)	1011, 1020
BslI	CCNNNNNNNGG	2 cut(s)	356, 595
BsmAI	GTCTC	2 cut(s)	164, 277
BsmBI	CGTCTC	1 cut(s)	164
BsmFI	GGGAC	2 cut(s)	1011, 1020
BsnI	GGCC	2 cut(s)	321, 1063
Bso31I	GGTCTC	1 cut(s)	277
Bsp13I	TCCGGA	1 cut(s)	305
Bsp143I	GATC	6 cut(s)	388, 418, 478, 709, 1045, 1072
Bsp19I	CCATGG	1 cut(s)	189
BspACI	CCGC	2 cut(s)	730, 1139
BspANI	GGCC	2 cut(s)	321, 1063
BspCNI	CTCAG	4 cut(s)	385, 516, 583, 606
BspEI	TCCGGA	1 cut(s)	305
BspLI	GGNNCC	1 cut(s)	348
BspMAI	CTGCAG	1 cut(s)	1129
BspMI	ACCTGC	1 cut(s)	523
BspPI	GGATC	3 cut(s)	383, 486, 1053
BspTI	CTTAAG	1 cut(s)	631
BspTNI	GGTCTC	1 cut(s)	277
BsrBI	CCGCTC	1 cut(s)	730
BsrI	ACTGG	1 cut(s)	607
BssECI	CCNNGG	2 cut(s)	18, 189
BssMI	GATC	6 cut(s)	388, 418, 478, 709, 1045, 1072
BssT1I	CCWWGG	2 cut(s)	18, 189
Bst2UI	CCWGG	4 cut(s)	351, 515, 901, 1116
Bst6I	CTCTTC	2 cut(s)	131, 752
BstAFI	CTTAAG	1 cut(s)	631
BstBAI	YACGTR	1 cut(s)	155
BstC8I	GCNNGC	1 cut(s)	454
BstDEI	CTNAG	4 cut(s)	393, 503, 591, 614
BstDSI	CCRYGG	1 cut(s)	189
BstF5I	GGATG	2 cut(s)	322, 408
BstKTI	GATC	6 cut(s)	391, 421, 481, 712, 1048, 1075
BstMAI	GTCTC	2 cut(s)	164, 277
BstMBI	GATC	6 cut(s)	388, 418, 478, 709, 1045, 1072
BstMWI	GCNNNNNNNGC	1 cut(s)	803
BstNI	CCWGG	4 cut(s)	351, 515, 901, 1116
BstNSI	RCATGY	1 cut(s)	452
BstSCI	CCNGG	4 cut(s)	349, 513, 899, 1114
BstSFI	CTRYAG	1 cut(s)	1125
BstV1I	GCAGC	5 cut(s)	658, 661, 784, 806, 1111
BstV2I	GAAGAC	1 cut(s)	879
BstX2I	RGATCY	2 cut(s)	478, 1045
BstYI	RGATCY	2 cut(s)	478, 1045
BsuI	GTATCC	1 cut(s)	243
BsuRI	GGCC	2 cut(s)	321, 1063
BtgI	CCRYGG	1 cut(s)	189
BtsCI	GGATG	2 cut(s)	322, 408
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	1 cut(s)	123
BveI	ACCTGC	1 cut(s)	523
Cac8I	GCNNGC	1 cut(s)	454
CaiI	CAGNNNCTG	1 cut(s)	1070
Cfr13I	GGNCC	2 cut(s)	347, 610
Csp6I	GTAC	3 cut(s)	441, 558, 1001
CviAII	CATG	8 cut(s)	190, 341, 449, 474, 607, 807, 1030, 1059
CviQI	GTAC	3 cut(s)	441, 558, 1001
DdeI	CTNAG	4 cut(s)	393, 503, 591, 614
DpnI	GATC	6 cut(s)	390, 420, 480, 711, 1047, 1074
DpnII	GATC	6 cut(s)	388, 418, 478, 709, 1045, 1072
EaeI	YGGCCR	2 cut(s)	319, 1061
Eam1104I	CTCTTC	2 cut(s)	131, 752
EarI	CTCTTC	2 cut(s)	131, 752
Eco130I	CCWWGG	2 cut(s)	18, 189
Eco31I	GGTCTC	1 cut(s)	277
Eco47I	GGWCC	2 cut(s)	347, 610
Eco57I	CTGAAG	2 cut(s)	114, 927
EcoRII	CCWGG	4 cut(s)	349, 513, 899, 1114
EcoT14I	CCWWGG	2 cut(s)	18, 189
EcoT22I	ATGCAT	1 cut(s)	952
ErhI	CCWWGG	2 cut(s)	18, 189
Esp3I	CGTCTC	1 cut(s)	164
FaeI	CATG	8 cut(s)	193, 344, 452, 477, 610, 810, 1033, 1062
FaqI	GGGAC	2 cut(s)	1011, 1020
FatI	CATG	8 cut(s)	189, 340, 448, 473, 606, 806, 1029, 1058
FauI	CCCGC	1 cut(s)	723
FbaI	TGATCA	1 cut(s)	418
Fnu4HI	GCNGC	6 cut(s)	672, 675, 795, 798, 1125, 1140
FokI	GGATG	2 cut(s)	309, 395
Fsp4HI	GCNGC	6 cut(s)	672, 675, 795, 798, 1125, 1140
FspBI	CTAG	2 cut(s)	6, 801
GluI	GCNGC	6 cut(s)	672, 675, 795, 798, 1125, 1140
HaeIII	GGCC	2 cut(s)	321, 1063
HapII	CCGG	3 cut(s)	212, 258, 306
Hin1II	CATG	8 cut(s)	193, 344, 452, 477, 610, 810, 1033, 1062
HinfI	GANTC	6 cut(s)	24, 185, 194, 405, 715, 933
HpaII	CCGG	3 cut(s)	212, 258, 306
Hpy166II	GTNNAC	1 cut(s)	925
Hpy188I	TCNGA	7 cut(s)	199, 237, 277, 506, 714, 772, 946
Hpy188III	TCNNGA	9 cut(s)	306, 392, 524, 613, 707, 719, 743, 862, 1088
Hpy8I	GTNNAC	1 cut(s)	925
Hpy99I	CGWCG	1 cut(s)	971
HpyAV	CCTTC	8 cut(s)	64, 68, 108, 121, 196, 589, 851, 951
HpyCH4IV	ACGT	2 cut(s)	154, 966
HpyCH4V	TGCA	8 cut(s)	162, 572, 794, 833, 887, 950, 1094, 1127
HpyF10VI	GCNNNNNNNGC	1 cut(s)	803
HpyF3I	CTNAG	4 cut(s)	393, 503, 591, 614
HpySE526I	ACGT	2 cut(s)	154, 966
Hsp92II	CATG	8 cut(s)	193, 344, 452, 477, 610, 810, 1033, 1062
Kpn2I	TCCGGA	1 cut(s)	305
Ksp22I	TGATCA	1 cut(s)	418
Kzo9I	GATC	6 cut(s)	388, 418, 478, 709, 1045, 1072
LmnI	GCTCC	4 cut(s)	260, 298, 697, 1172
Lsp1109I	GCAGC	5 cut(s)	658, 661, 784, 806, 1111
LweI	GCATC	4 cut(s)	679, 736, 937, 1081
MaeI	CTAG	2 cut(s)	6, 801
MaeII	ACGT	2 cut(s)	154, 966
MaeIII	GTNAC	3 cut(s)	13, 488, 598
MalI	GATC	6 cut(s)	390, 420, 480, 711, 1047, 1074
MbiI	CCGCTC	1 cut(s)	730
MboI	GATC	6 cut(s)	388, 418, 478, 709, 1045, 1072
MboII	GAAGA	6 cut(s)	36, 148, 329, 473, 769, 884
MflI	RGATCY	2 cut(s)	478, 1045
MlsI	TGGCCA	1 cut(s)	1063
MluCI	AATT	8 cut(s)	34, 142, 206, 519, 766, 788, 1083, 1167
MluNI	TGGCCA	1 cut(s)	1063
Mox20I	TGGCCA	1 cut(s)	1063
Mph1103I	ATGCAT	1 cut(s)	952
MroI	TCCGGA	1 cut(s)	305
MscI	TGGCCA	1 cut(s)	1063
MseI	TTAA	3 cut(s)	65, 632, 764
Msp20I	TGGCCA	1 cut(s)	1063
MspA1I	CMGCKG	1 cut(s)	797
MspCI	CTTAAG	1 cut(s)	631
MspI	CCGG	3 cut(s)	212, 258, 306
MspR9I	CCNGG	4 cut(s)	351, 515, 901, 1116
MvaI	CCWGG	4 cut(s)	351, 515, 901, 1116
MwoI	GCNNNNNNNGC	1 cut(s)	803
NcoI	CCATGG	1 cut(s)	189
NdeII	GATC	6 cut(s)	388, 418, 478, 709, 1045, 1072
NlaIII	CATG	8 cut(s)	193, 344, 452, 477, 610, 810, 1033, 1062
NlaIV	GGNNCC	1 cut(s)	348
NmuCI	GTSAC	2 cut(s)	13, 488
NsiI	ATGCAT	1 cut(s)	952
NspI	RCATGY	1 cut(s)	452
PfeI	GAWTC	6 cut(s)	24, 185, 194, 405, 715, 933
PflMI	CCANNNNNTGG	1 cut(s)	356
PfoI	TCCNGGA	1 cut(s)	349
PkrI	GCNGC	6 cut(s)	673, 676, 796, 799, 1126, 1141
Ppu21I	YACGTR	1 cut(s)	155
Psp6I	CCWGG	4 cut(s)	349, 513, 899, 1114
PspGI	CCWGG	4 cut(s)	349, 513, 899, 1114
PspN4I	GGNNCC	1 cut(s)	348
PspPI	GGNCC	2 cut(s)	347, 610
PstI	CTGCAG	1 cut(s)	1129
PstNI	CAGNNNCTG	1 cut(s)	1070
PsuI	RGATCY	2 cut(s)	478, 1045
PvuII	CAGCTG	1 cut(s)	797
RsaI	GTAC	3 cut(s)	442, 559, 1002
RsaNI	GTAC	3 cut(s)	441, 558, 1001
SaqAI	TTAA	3 cut(s)	65, 632, 764
SatI	GCNGC	6 cut(s)	672, 675, 795, 798, 1125, 1140
Sau3AI	GATC	6 cut(s)	388, 418, 478, 709, 1045, 1072
Sau96I	GGNCC	2 cut(s)	347, 610
ScaI	AGTACT	1 cut(s)	442
ScrFI	CCNGG	4 cut(s)	351, 515, 901, 1116
SfaNI	GCATC	4 cut(s)	679, 736, 937, 1081
SfcI	CTRYAG	1 cut(s)	1125
SinI	GGWCC	2 cut(s)	347, 610
SmlI	CTYRAG	3 cut(s)	266, 631, 1076
SmoI	CTYRAG	3 cut(s)	266, 631, 1076
Sse9I	AATT	8 cut(s)	34, 142, 206, 519, 766, 788, 1083, 1167
SsiI	CCGC	2 cut(s)	730, 1139
SspMI	CTAG	2 cut(s)	6, 801
StyD4I	CCNGG	4 cut(s)	349, 513, 899, 1114
StyI	CCWWGG	2 cut(s)	18, 189
TaiI	ACGT	2 cut(s)	157, 969
TaqI	TCGA	2 cut(s)	376, 969
TaqII	GACCGA	1 cut(s)	182
TasI	AATT	8 cut(s)	34, 142, 206, 519, 766, 788, 1083, 1167
TatI	WGTACW	1 cut(s)	440
TauI	GCSGC	1 cut(s)	1142
TfiI	GAWTC	6 cut(s)	24, 185, 194, 405, 715, 933
Tru1I	TTAA	3 cut(s)	65, 632, 764
Tru9I	TTAA	3 cut(s)	65, 632, 764
TscAI	CASTG	1 cut(s)	130
TseFI	GTSAC	2 cut(s)	13, 488
TseI	GCWGC	5 cut(s)	671, 674, 794, 797, 1124
Tsp45I	GTSAC	2 cut(s)	13, 488
TspDTI	ATGAA	2 cut(s)	329, 1125
TspRI	CASTG	1 cut(s)	130
Van91I	CCANNNNNTGG	1 cut(s)	356
Vha464I	CTTAAG	1 cut(s)	631
VpaK11BI	GGWCC	2 cut(s)	347, 610
XapI	RAATTY	3 cut(s)	34, 519, 766
XceI	RCATGY	1 cut(s)	452
XspI	CTAG	2 cut(s)	6, 801
ZrmI	AGTACT	1 cut(s)	442
Zsp2I	ATGCAT	1 cut(s)	952

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.