Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0007440

Physical Location & Seq

Genomic Coordinates Forward (+)

2029424 .. 2034938

Gene Structure 5515 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g02550.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGACGAGGTTACTGACCTTGGGATTCTCCCCAATTTCCATTTCTTCTTCTTGCCCCTCCCTCCTTCCCTTAATCTCCACACTCTCATCTTCCACCTCCTTCTCCTTCTCCACCAAGCTCACTGCCTCAGGCAAGAGTAATTTGGTTGTACGCGGTTGCAGGAGTGAGACGAAGCTGCGAGATTCGATGGAATCGGAGAAGGAATTGCCGGAGTTCAACAGAAGCCTGTATCCGAGCATAGAGCCTTACAGCTCCGGCTCTCTCAAGGTCTCCGATATCCACTCCATCTATTGGGAGCAGTCTGGATATCCCACCGGCCATCCTGTTATATTTCTCCATGGAGGTCCAGGAGGTGGAACTTCCCCAAATAATCGAAGATTCTTTGATCCTGAGTTCTACAGAATCATCCTATTTGATCAGCGAGGTTCAGGGAAAAGTACTCCACATGCATGCTTGGAAGAAAATACCACATGGGATTTGATTGGTGACATTGAAAAGCTCAGAGAACACCTGGAAATTCCAGAATGGCAGGTTTTTGGTGGGTCTTGGGGGAGCACACTTGCCCTGGCATATAGCCAATCACACCCTGATAAGGTTACTGGCATGGTCCTGAGAGGGATTTTTCTCTTAAGAAAGAAAGAGATTGATTGGTTTTATGAGGGTGGTGCTGCTGCCATATACCCTGATGCCTGGGAGCAATTTCGTGATCTGATTCCGGAAAATGAGCATGGAAGTTTTGTTGATGCTTATCGGAAGAGATTAAATTCCGATGATAAGGAAGTACAATATGCAGCTGCTAGAGCGTGGACCATGTGGGAAATGATGACTGCCCATCTCCTTCCAAATAATGAGAACATCAAGAGGGGGGAAGATGATAGTTTTGCATTGGCATTTGCCAGGATTGAAAATCATTACTTTGTGAACAGAGGATTCTTTCCTTCAGATGCATACCTGTTAGATAACATCGAAAAGATAAGGCATATAAAAACTACAATCGTACAGGGACGATATGATGTTTGCTGTCCCATGATGTCGGCGTGGGATCTTCATAAAGCATGGCCAGAAGCTGATCTCAAGGTGATTCAAGATGCAGGGCATTCTGCTAATGAACCGGGAATAGCTGCAGAGCTTGTGGCTGCAAATGAGAAGCTAAAACACATAAAAGTTGGAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00330 map00330

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

392

Amino Acids

44.01

Weight (kDa)

5.83

Isoelectric Point (pI)

46.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	108 - 370	1.9e-32	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	109 - 370	4.1e-08	Alpha/beta hydrolase family
Hydrolase_4	PF12146	133 - 271	4.7e-08	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14260 AT2G14260 AT2G14260 AT2G14260
fragaria_vesca	FvH4_2g02550
malus_domestica	MD10G1115000.v1.1
prunus_persica	Prupe.8G157100_v2.0.a1 Prupe.8G157100_v2.0.a1
pyrus_communis	pycom05g10790 pycom10g09950 pycom15g16330
rosa_chinensis	RchiOBHm_Chr6g0246361
rosa_laevigata	RLG00000015261
rosa_multiflora	Rmu_co8135098.1_g000001 Rmu_sc0001066.1_g000006 Rmu_sc0008965.1_g000003
rosa_roxburghii	Rroxscaffold_7G00214650
rosa_rugosa	Rorug05G0520500
rosa_samantha	Rh6AG034700 Rh6BG029800 Rh6CG030200 Rh6CG067300 Rh6DG029100
rosa_wichuraiana	Rw6G002810 Rw6G002970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	520
AccB7I	CCANNNNNTGG	2 cut(s)	291, 353
AccII	CGCG	1 cut(s)	153
AccIII	TCCGGA	1 cut(s)	715
AciI	CCGC	1 cut(s)	153
AclWI	GGATC	2 cut(s)	380, 1050
AcoI	YGGCCR	2 cut(s)	316, 1058
AcsI	RAATTY	2 cut(s)	516, 763
AcuI	CTGAAG	1 cut(s)	924
AfaI	GTAC	4 cut(s)	150, 439, 783, 999
AfiI	CCNNNNNNNGG	3 cut(s)	291, 353, 592
AflII	CTTAAG	1 cut(s)	628
AgsI	TTSAA	4 cut(s)	217, 494, 905, 1085
AjnI	CCWGG	5 cut(s)	346, 510, 564, 689, 896
AjuI	GAANNNNNNNTTGG	2 cut(s)	25, 57
AluBI	AGCT	9 cut(s)	118, 175, 252, 499, 794, 1067, 1121, 1129, 1150
AluI	AGCT	9 cut(s)	118, 175, 252, 499, 794, 1067, 1121, 1129, 1150
Alw21I	GWGCWC	1 cut(s)	557
Alw26I	GTCTC	2 cut(s)	161, 274
AlwI	GGATC	2 cut(s)	380, 1050
AlwNI	CAGNNNCTG	1 cut(s)	1067
Aor13HI	TCCGGA	1 cut(s)	715
AoxI	GGCC	2 cut(s)	316, 1058
ApeKI	GCWGC	7 cut(s)	175, 668, 671, 791, 794, 1121, 1136
ApoI	RAATTY	2 cut(s)	516, 763
AspS9I	GGNCC	3 cut(s)	344, 607, 807
AsuC2I	CCSGG	1 cut(s)	1113
AsuHPI	GGTGA	2 cut(s)	497, 1090
AvaII	GGWCC	3 cut(s)	344, 607, 807
AxyI	CCTNAGG	1 cut(s)	127
BalI	TGGCCA	1 cut(s)	1060
Bbv12I	GWGCWC	1 cut(s)	557
BbvI	GCAGC	7 cut(s)	162, 655, 658, 781, 803, 1108, 1123
BccI	CCATC	4 cut(s)	181, 293, 327, 840
BciT130I	CCWGG	5 cut(s)	348, 512, 566, 691, 898
BciVI	GTATCC	1 cut(s)	240
BclI	TGATCA	1 cut(s)	415
BcnI	CCSGG	1 cut(s)	1113
BcoDI	GTCTC	2 cut(s)	161, 274
BfaI	CTAG	1 cut(s)	798
BfmI	CTRYAG	2 cut(s)	397, 1122
BfrI	CTTAAG	1 cut(s)	628
BfuAI	ACCTGC	1 cut(s)	520
BfuI	GTATCC	1 cut(s)	240
BisI	GCNGC	7 cut(s)	176, 669, 672, 792, 795, 1122, 1137
BlsI	GCNGC	7 cut(s)	177, 670, 673, 793, 796, 1123, 1138
BmcAI	AGTACT	1 cut(s)	439
Bme1390I	CCNGG	6 cut(s)	348, 512, 566, 691, 898, 1113
Bme18I	GGWCC	3 cut(s)	344, 607, 807
BmgT120I	GGNCC	3 cut(s)	344, 607, 807
BmrFI	CCNGG	6 cut(s)	348, 512, 566, 691, 898, 1113
BmsI	GCATC	4 cut(s)	676, 733, 934, 1078
BpuEI	CTTGAG	2 cut(s)	248, 1058
BpuMI	CCSGG	1 cut(s)	1113
BsaBI	GATNNNNATC	1 cut(s)	747
BsaI	GGTCTC	1 cut(s)	274
BsaJI	CCNNGG	4 cut(s)	18, 337, 564, 690
BsaWI	WCCGGW	1 cut(s)	715
Bsc4I	CCNNNNNNNGG	3 cut(s)	291, 353, 592
Bse118I	RCCGGY	1 cut(s)	314
Bse1I	ACTGG	1 cut(s)	604
Bse21I	CCTNAGG	1 cut(s)	127
Bse8I	GATNNNNATC	1 cut(s)	747
BseAI	TCCGGA	1 cut(s)	715
BseBI	CCWGG	5 cut(s)	348, 512, 566, 691, 898
BseDI	CCNNGG	4 cut(s)	18, 337, 564, 690
BseGI	GGATG	2 cut(s)	319, 405
BseJI	GATNNNNATC	1 cut(s)	747
BseLI	CCNNNNNNNGG	3 cut(s)	291, 353, 592
BseMII	CTCAG	4 cut(s)	141, 381, 514, 602
BseNI	ACTGG	1 cut(s)	604
BseXI	GCAGC	7 cut(s)	162, 655, 658, 781, 803, 1108, 1123
Bsh1236I	CGCG	1 cut(s)	153
BshFI	GGCC	2 cut(s)	318, 1060
BsiHKAI	GWGCWC	1 cut(s)	557
BsiSI	CCGG	5 cut(s)	209, 255, 315, 716, 1112
BslFI	GGGAC	2 cut(s)	1008, 1017
BslI	CCNNNNNNNGG	3 cut(s)	291, 353, 592
BsmAI	GTCTC	2 cut(s)	161, 274
BsmBI	CGTCTC	1 cut(s)	161
BsmFI	GGGAC	2 cut(s)	1008, 1017
BsmI	GAATGC	1 cut(s)	1096
BsnI	GGCC	2 cut(s)	318, 1060
Bso31I	GGTCTC	1 cut(s)	274
Bsp1286I	GDGCHC	1 cut(s)	557
Bsp13I	TCCGGA	1 cut(s)	715
Bsp143I	GATC	5 cut(s)	385, 415, 706, 1042, 1069
Bsp19I	CCATGG	1 cut(s)	337
BspACI	CCGC	1 cut(s)	153
BspANI	GGCC	2 cut(s)	318, 1060
BspCNI	CTCAG	4 cut(s)	140, 382, 513, 603
BspEI	TCCGGA	1 cut(s)	715
BspFNI	CGCG	1 cut(s)	153
BspMAI	CTGCAG	1 cut(s)	1126
BspMI	ACCTGC	1 cut(s)	520
BspPI	GGATC	2 cut(s)	380, 1050
BspTI	CTTAAG	1 cut(s)	628
BspTNI	GGTCTC	1 cut(s)	274
BsrFI	RCCGGY	1 cut(s)	314
BsrI	ACTGG	1 cut(s)	604
BssAI	RCCGGY	1 cut(s)	314
BssECI	CCNNGG	4 cut(s)	18, 337, 564, 690
BssMI	GATC	5 cut(s)	385, 415, 706, 1042, 1069
BssT1I	CCWWGG	2 cut(s)	18, 337
Bst2UI	CCWGG	5 cut(s)	348, 512, 566, 691, 898
Bst6I	CTCTTC	1 cut(s)	749
BstAFI	CTTAAG	1 cut(s)	628
BstC8I	GCNNGC	1 cut(s)	451
BstDEI	CTNAG	4 cut(s)	127, 390, 500, 611
BstDSI	CCRYGG	1 cut(s)	337
BstF5I	GGATG	2 cut(s)	319, 405
BstFNI	CGCG	1 cut(s)	153
BstKTI	GATC	5 cut(s)	388, 418, 709, 1045, 1072
BstMAI	GTCTC	2 cut(s)	161, 274
BstMBI	GATC	5 cut(s)	385, 415, 706, 1042, 1069
BstMWI	GCNNNNNNNGC	1 cut(s)	800
BstNI	CCWGG	5 cut(s)	348, 512, 566, 691, 898
BstNSI	RCATGY	2 cut(s)	449, 453
BstSCI	CCNGG	6 cut(s)	346, 510, 564, 689, 896, 1111
BstSFI	CTRYAG	2 cut(s)	397, 1122
BstUI	CGCG	1 cut(s)	153
BstV1I	GCAGC	7 cut(s)	162, 655, 658, 781, 803, 1108, 1123
BstX2I	RGATCY	1 cut(s)	1042
BstYI	RGATCY	1 cut(s)	1042
Bsu36I	CCTNAGG	1 cut(s)	127
BsuI	GTATCC	1 cut(s)	240
BsuRI	GGCC	2 cut(s)	318, 1060
BtgI	CCRYGG	1 cut(s)	337
BtsCI	GGATG	2 cut(s)	319, 405
BtsI	GCAGTG	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	120
BveI	ACCTGC	1 cut(s)	520
Cac8I	GCNNGC	1 cut(s)	451
CaiI	CAGNNNCTG	1 cut(s)	1067
Cfr10I	RCCGGY	1 cut(s)	314
Cfr13I	GGNCC	3 cut(s)	344, 607, 807
Csp6I	GTAC	4 cut(s)	149, 438, 782, 998
CviAII	CATG	9 cut(s)	338, 446, 450, 471, 604, 728, 811, 1027, 1056
CviQI	GTAC	4 cut(s)	149, 438, 782, 998
DdeI	CTNAG	4 cut(s)	127, 390, 500, 611
DpnI	GATC	5 cut(s)	387, 417, 708, 1044, 1071
DpnII	GATC	5 cut(s)	385, 415, 706, 1042, 1069
EaeI	YGGCCR	2 cut(s)	316, 1058
Eam1104I	CTCTTC	1 cut(s)	749
EarI	CTCTTC	1 cut(s)	749
Eco130I	CCWWGG	2 cut(s)	18, 337
Eco31I	GGTCTC	1 cut(s)	274
Eco32I	GATATC	2 cut(s)	277, 308
Eco47I	GGWCC	3 cut(s)	344, 607, 807
Eco57I	CTGAAG	1 cut(s)	924
Eco81I	CCTNAGG	1 cut(s)	127
EcoRII	CCWGG	5 cut(s)	346, 510, 564, 689, 896
EcoRV	GATATC	2 cut(s)	277, 308
EcoT14I	CCWWGG	2 cut(s)	18, 337
EcoT22I	ATGCAT	2 cut(s)	451, 949
ErhI	CCWWGG	2 cut(s)	18, 337
Esp3I	CGTCTC	1 cut(s)	161
FaeI	CATG	9 cut(s)	341, 449, 453, 474, 607, 731, 814, 1030, 1059
FaqI	GGGAC	2 cut(s)	1008, 1017
FatI	CATG	9 cut(s)	337, 445, 449, 470, 603, 727, 810, 1026, 1055
FbaI	TGATCA	1 cut(s)	415
Fnu4HI	GCNGC	7 cut(s)	176, 669, 672, 792, 795, 1122, 1137
FokI	GGATG	2 cut(s)	306, 392
Fsp4HI	GCNGC	7 cut(s)	176, 669, 672, 792, 795, 1122, 1137
FspBI	CTAG	1 cut(s)	798
GluI	GCNGC	7 cut(s)	176, 669, 672, 792, 795, 1122, 1137
HaeIII	GGCC	2 cut(s)	318, 1060
HapII	CCGG	5 cut(s)	209, 255, 315, 716, 1112
Hin1II	CATG	9 cut(s)	341, 449, 453, 474, 607, 731, 814, 1030, 1059
HinfI	GANTC	8 cut(s)	24, 182, 191, 378, 402, 712, 930, 1081
HpaII	CCGG	5 cut(s)	209, 255, 315, 716, 1112
HphI	GGTGA	2 cut(s)	497, 1090
Hpy166II	GTNNAC	2 cut(s)	807, 922
Hpy188I	TCNGA	8 cut(s)	196, 234, 274, 503, 711, 753, 769, 943
Hpy188III	TCNNGA	8 cut(s)	303, 389, 521, 610, 704, 716, 859, 1085
Hpy8I	GTNNAC	2 cut(s)	807, 922
HpyAV	CCTTC	6 cut(s)	74, 109, 115, 193, 848, 948
HpyCH4V	TGCA	8 cut(s)	159, 449, 791, 884, 947, 1091, 1124, 1139
HpyF10VI	GCNNNNNNNGC	1 cut(s)	800
HpyF3I	CTNAG	4 cut(s)	127, 390, 500, 611
Hsp92II	CATG	9 cut(s)	341, 449, 453, 474, 607, 731, 814, 1030, 1059
Kpn2I	TCCGGA	1 cut(s)	715
Ksp22I	TGATCA	1 cut(s)	415
Kzo9I	GATC	5 cut(s)	385, 415, 706, 1042, 1069
LmnI	GCTCC	5 cut(s)	257, 295, 552, 694, 1169
Lsp1109I	GCAGC	7 cut(s)	162, 655, 658, 781, 803, 1108, 1123
LweI	GCATC	4 cut(s)	676, 733, 934, 1078
MaeI	CTAG	1 cut(s)	798
MaeIII	GTNAC	3 cut(s)	9, 485, 595
MalI	GATC	5 cut(s)	387, 417, 708, 1044, 1071
MboI	GATC	5 cut(s)	385, 415, 706, 1042, 1069
MboII	GAAGA	8 cut(s)	36, 39, 81, 387, 470, 766, 881, 1037
MflI	RGATCY	1 cut(s)	1042
MhlI	GDGCHC	1 cut(s)	557
MlsI	TGGCCA	1 cut(s)	1060
MluCI	AATT	6 cut(s)	33, 139, 203, 516, 698, 763
MluNI	TGGCCA	1 cut(s)	1060
MmeI	TCCRAC	1 cut(s)	1147
Mox20I	TGGCCA	1 cut(s)	1060
Mph1103I	ATGCAT	2 cut(s)	451, 949
MroI	TCCGGA	1 cut(s)	715
MscI	TGGCCA	1 cut(s)	1060
MseI	TTAA	3 cut(s)	71, 629, 761
MslI	CAYNNNNRTG	1 cut(s)	448
Msp20I	TGGCCA	1 cut(s)	1060
MspA1I	CMGCKG	1 cut(s)	794
MspCI	CTTAAG	1 cut(s)	628
MspI	CCGG	5 cut(s)	209, 255, 315, 716, 1112
MspR9I	CCNGG	6 cut(s)	348, 512, 566, 691, 898, 1113
Mva1269I	GAATGC	1 cut(s)	1096
MvaI	CCWGG	5 cut(s)	348, 512, 566, 691, 898
MvnI	CGCG	1 cut(s)	153
MwoI	GCNNNNNNNGC	1 cut(s)	800
NciI	CCSGG	1 cut(s)	1113
NcoI	CCATGG	1 cut(s)	337
NdeII	GATC	5 cut(s)	385, 415, 706, 1042, 1069
NlaIII	CATG	9 cut(s)	341, 449, 453, 474, 607, 731, 814, 1030, 1059
NmuCI	GTSAC	1 cut(s)	485
NsiI	ATGCAT	2 cut(s)	451, 949
NspI	RCATGY	2 cut(s)	449, 453
PaeI	GCATGC	1 cut(s)	453
PctI	GAATGC	1 cut(s)	1096
PfeI	GAWTC	8 cut(s)	24, 182, 191, 378, 402, 712, 930, 1081
PflMI	CCANNNNNTGG	2 cut(s)	291, 353
PfoI	TCCNGGA	1 cut(s)	346
PkrI	GCNGC	7 cut(s)	177, 670, 673, 793, 796, 1123, 1138
Psp6I	CCWGG	5 cut(s)	346, 510, 564, 689, 896
PspGI	CCWGG	5 cut(s)	346, 510, 564, 689, 896
PspPI	GGNCC	3 cut(s)	344, 607, 807
PstI	CTGCAG	1 cut(s)	1126
PstNI	CAGNNNCTG	1 cut(s)	1067
PsuI	RGATCY	1 cut(s)	1042
PvuII	CAGCTG	1 cut(s)	794
RsaI	GTAC	4 cut(s)	150, 439, 783, 999
RsaNI	GTAC	4 cut(s)	149, 438, 782, 998
RseI	CAYNNNNRTG	1 cut(s)	448
SaqAI	TTAA	3 cut(s)	71, 629, 761
SatI	GCNGC	7 cut(s)	176, 669, 672, 792, 795, 1122, 1137
Sau3AI	GATC	5 cut(s)	385, 415, 706, 1042, 1069
Sau96I	GGNCC	3 cut(s)	344, 607, 807
ScaI	AGTACT	1 cut(s)	439
ScrFI	CCNGG	6 cut(s)	348, 512, 566, 691, 898, 1113
SduI	GDGCHC	1 cut(s)	557
SfaNI	GCATC	4 cut(s)	676, 733, 934, 1078
SfcI	CTRYAG	2 cut(s)	397, 1122
SinI	GGWCC	3 cut(s)	344, 607, 807
SmiMI	CAYNNNNRTG	1 cut(s)	448
SmlI	CTYRAG	3 cut(s)	263, 628, 1073
SmoI	CTYRAG	3 cut(s)	263, 628, 1073
SphI	GCATGC	1 cut(s)	453
Sse9I	AATT	6 cut(s)	33, 139, 203, 516, 698, 763
SsiI	CCGC	1 cut(s)	153
SspMI	CTAG	1 cut(s)	798
StyD4I	CCNGG	6 cut(s)	346, 510, 564, 689, 896, 1111
StyI	CCWWGG	2 cut(s)	18, 337
TaqI	TCGA	3 cut(s)	185, 373, 966
TasI	AATT	6 cut(s)	33, 139, 203, 516, 698, 763
TatI	WGTACW	2 cut(s)	437, 781
TfiI	GAWTC	8 cut(s)	24, 182, 191, 378, 402, 712, 930, 1081
Tru1I	TTAA	3 cut(s)	71, 629, 761
Tru9I	TTAA	3 cut(s)	71, 629, 761
TscAI	CASTG	1 cut(s)	127
TseFI	GTSAC	1 cut(s)	485
TseI	GCWGC	7 cut(s)	175, 668, 671, 791, 794, 1121, 1136
Tsp45I	GTSAC	1 cut(s)	485
TspDTI	ATGAA	2 cut(s)	1037, 1122
TspRI	CASTG	1 cut(s)	127
Van91I	CCANNNNNTGG	2 cut(s)	291, 353
Vha464I	CTTAAG	1 cut(s)	628
VpaK11BI	GGWCC	3 cut(s)	344, 607, 807
XapI	RAATTY	2 cut(s)	516, 763
XceI	RCATGY	2 cut(s)	449, 453
XspI	CTAG	1 cut(s)	798
ZrmI	AGTACT	1 cut(s)	439
Zsp2I	ATGCAT	2 cut(s)	451, 949

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.