Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0007440

Physical Location & Seq

Genomic Coordinates Forward (+)

2612667 .. 2618675

Gene Structure 6009 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG029100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGACTAGGTTAGTGACCTTGGGATTCTCTCCAAATTCCTTTTCTTCCGCACCCTCCCTTCCCTTAATCTCCAACACCTCCTCCCATTTTCAACTCCCTTCCTCCTCCTTCTCCTTCTCCACCAGCCTCACTGCTTCAGGGAAGAGGAATTTGGTTGTACGTGGTTGCAAGACTGAGACGAAGCAACGAGATTTCATGGAATCGGAGAAGGAATTGCCGGAATTCAATAGAGAGCTGTATCCGAGCATTGAGCCTTACAGCTCCGGCTTTCTCAAGGTTTCGGATATTCACTCTATCTATTGGGAGCAGTCCGGAAATCCCACCGGCCATCCTGTTATATTTCTTCATGGGGGTCCAGGAGGTGGAACTTCCCCAAATAATCGAAGATTCTTTGATCCTGAGTTTTACAGAATCATCCTATTTGATCAGCGAGGTTCAGGGAAAAGTACTCCACATGCTTGCTTGGAAGAAAACACCACATGGGATCTCATTAGTGACATTGAAAAGCTCAGAGAACACCTGGAAATTCCAGAATGGCAGGTTTTTGGTGGGTCTTGGGGGAGTACCCTTGCCCTTGCATATAGCCAATCACACCCTGAGAAGGTTACTGGCATGGTCCTGAGAGGGATTTTTCTCTTAAGAAAGAAAGAGATTGATTGGTTTTATGAGGGTGGTGCTGCTGCCATATACCCTGATGCTTGGGAGCAGTTTCGTGATCTGATTCCGGAAAATGAGCGGGGAAGTTTTCTTGATGCTTATAGGAAGAGATTAAATTCCGATGATAAGGAAATACAATTTGCAGCTGCTAGAGCATGGACAATGTGGGAAATGATGACTGCACATCTCCTTCCAAATGACGAGAACATCAAGAGGGGGGAAGACGATATTTTTGCATTGGCATTTGCCAGGATTGAAAATCATTACTTTGTGAACAGAGGATTCTTTCCTTCAGATGCATACCTGTTAGATAACGTCGAAAAGATAAGGCATATAAAAACTACAATCGTACAGGTATATGTTTTGTTTTCACTCCATACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00330 map00330

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

346

Amino Acids

39.56

Weight (kDa)

5.8

Isoelectric Point (pI)

43.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	111 - 262	7.7e-26	alpha/beta hydrolase fold
Hydrolase_4	PF12146	136 - 223	8.2e-08	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14260 AT2G14260 AT2G14260 AT2G14260
fragaria_vesca	FvH4_2g02550
malus_domestica	MD10G1115000.v1.1
prunus_persica	Prupe.8G157100_v2.0.a1 Prupe.8G157100_v2.0.a1
pyrus_communis	pycom05g10790 pycom10g09950 pycom15g16330
rosa_chinensis	RchiOBHm_Chr6g0246361
rosa_laevigata	RLG00000015261
rosa_multiflora	Rmu_co8135098.1_g000001 Rmu_sc0001066.1_g000006 Rmu_sc0008965.1_g000003
rosa_roxburghii	Rroxscaffold_7G00214650
rosa_rugosa	Rorug05G0520500
rosa_samantha	Rh6AG034700 Rh6BG029800 Rh6CG030200 Rh6CG067300 Rh6DG029100
rosa_wichuraiana	Rw6G002810 Rw6G002970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	529
AccB7I	CCANNNNNTGG	1 cut(s)	362
AccBSI	CCGCTC	1 cut(s)	736
AccIII	TCCGGA	2 cut(s)	311, 724
AciI	CCGC	2 cut(s)	48, 736
AclWI	GGATC	2 cut(s)	389, 492
AcoI	YGGCCR	1 cut(s)	325
AcsI	RAATTY	5 cut(s)	34, 148, 221, 525, 772
AcuI	CTGAAG	2 cut(s)	120, 933
AfaI	GTAC	4 cut(s)	159, 448, 565, 1008
AfiI	CCNNNNNNNGG	2 cut(s)	362, 601
AflII	CTTAAG	1 cut(s)	637
AgsI	TTSAA	4 cut(s)	92, 226, 503, 914
AjnI	CCWGG	3 cut(s)	355, 519, 905
AjuI	GAANNNNNNNTTGG	4 cut(s)	25, 57, 134, 166
AluBI	AGCT	4 cut(s)	235, 261, 508, 803
AluI	AGCT	4 cut(s)	235, 261, 508, 803
Alw26I	GTCTC	1 cut(s)	170
AlwI	GGATC	2 cut(s)	389, 492
Aor13HI	TCCGGA	2 cut(s)	311, 724
AoxI	GGCC	1 cut(s)	325
ApeKI	GCWGC	4 cut(s)	677, 680, 800, 803
ApoI	RAATTY	5 cut(s)	34, 148, 221, 525, 772
ArsI	GACNNNNNNTTYG	2 cut(s)	872, 904
AspS9I	GGNCC	2 cut(s)	353, 616
AvaII	GGWCC	2 cut(s)	353, 616
BbsI	GAAGAC	1 cut(s)	885
BbvI	GCAGC	4 cut(s)	664, 667, 790, 812
BccI	CCATC	1 cut(s)	336
BcgI	CGANNNNNNTGC	2 cut(s)	872, 906
BciT130I	CCWGG	3 cut(s)	357, 521, 907
BciVI	GTATCC	1 cut(s)	249
BclI	TGATCA	1 cut(s)	424
BcoDI	GTCTC	1 cut(s)	170
BfaI	CTAG	2 cut(s)	6, 807
BfrI	CTTAAG	1 cut(s)	637
BfuAI	ACCTGC	1 cut(s)	529
BfuI	GTATCC	1 cut(s)	249
BisI	GCNGC	4 cut(s)	678, 681, 801, 804
BlsI	GCNGC	4 cut(s)	679, 682, 802, 805
BmcAI	AGTACT	1 cut(s)	448
Bme1390I	CCNGG	3 cut(s)	357, 521, 907
Bme18I	GGWCC	2 cut(s)	353, 616
BmgT120I	GGNCC	2 cut(s)	353, 616
BmiI	GGNNCC	1 cut(s)	354
BmrFI	CCNGG	3 cut(s)	357, 521, 907
BmsI	GCATC	3 cut(s)	685, 742, 943
BpiI	GAAGAC	1 cut(s)	885
BpuEI	CTTGAG	1 cut(s)	257
BsaAI	YACGTR	1 cut(s)	161
BsaJI	CCNNGG	1 cut(s)	18
BsaWI	WCCGGW	2 cut(s)	311, 724
BsaXI	ACNNNNNCTCC	2 cut(s)	65, 95
Bsc4I	CCNNNNNNNGG	2 cut(s)	362, 601
Bse118I	RCCGGY	1 cut(s)	323
Bse1I	ACTGG	1 cut(s)	613
BseAI	TCCGGA	2 cut(s)	311, 724
BseBI	CCWGG	3 cut(s)	357, 521, 907
BseDI	CCNNGG	1 cut(s)	18
BseGI	GGATG	2 cut(s)	328, 414
BseLI	CCNNNNNNNGG	2 cut(s)	362, 601
BseMII	CTCAG	5 cut(s)	165, 390, 523, 588, 611
BseNI	ACTGG	1 cut(s)	613
BseRI	GAGGAG	2 cut(s)	70, 94
BseXI	GCAGC	4 cut(s)	664, 667, 790, 812
BsgI	GTGCAG	1 cut(s)	822
BshFI	GGCC	1 cut(s)	327
BsiSI	CCGG	5 cut(s)	218, 264, 312, 324, 725
BslI	CCNNNNNNNGG	2 cut(s)	362, 601
BsmAI	GTCTC	1 cut(s)	170
BsmBI	CGTCTC	1 cut(s)	170
BsnI	GGCC	1 cut(s)	327
Bsp13I	TCCGGA	2 cut(s)	311, 724
Bsp143I	GATC	4 cut(s)	394, 424, 484, 715
BspACI	CCGC	2 cut(s)	48, 736
BspANI	GGCC	1 cut(s)	327
BspCNI	CTCAG	5 cut(s)	166, 391, 522, 589, 612
BspEI	TCCGGA	2 cut(s)	311, 724
BspLI	GGNNCC	1 cut(s)	354
BspMI	ACCTGC	1 cut(s)	529
BspPI	GGATC	2 cut(s)	389, 492
BspTI	CTTAAG	1 cut(s)	637
BsrBI	CCGCTC	1 cut(s)	736
BsrFI	RCCGGY	1 cut(s)	323
BsrI	ACTGG	1 cut(s)	613
BssAI	RCCGGY	1 cut(s)	323
BssECI	CCNNGG	1 cut(s)	18
BssMI	GATC	4 cut(s)	394, 424, 484, 715
BssT1I	CCWWGG	1 cut(s)	18
Bst2UI	CCWGG	3 cut(s)	357, 521, 907
Bst6I	CTCTTC	2 cut(s)	137, 758
BstAFI	CTTAAG	1 cut(s)	637
BstBAI	YACGTR	1 cut(s)	161
BstC8I	GCNNGC	1 cut(s)	460
BstDEI	CTNAG	5 cut(s)	174, 399, 509, 597, 620
BstF5I	GGATG	2 cut(s)	328, 414
BstKTI	GATC	4 cut(s)	397, 427, 487, 718
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	4 cut(s)	394, 424, 484, 715
BstMWI	GCNNNNNNNGC	1 cut(s)	809
BstNI	CCWGG	3 cut(s)	357, 521, 907
BstNSI	RCATGY	1 cut(s)	458
BstSCI	CCNGG	3 cut(s)	355, 519, 905
BstV1I	GCAGC	4 cut(s)	664, 667, 790, 812
BstV2I	GAAGAC	1 cut(s)	885
BstX2I	RGATCY	1 cut(s)	484
BstYI	RGATCY	1 cut(s)	484
BsuI	GTATCC	1 cut(s)	249
BsuRI	GGCC	1 cut(s)	327
BtsCI	GGATG	2 cut(s)	328, 414
BtsI	GCAGTG	1 cut(s)	129
BtsIMutI	CAGTG	1 cut(s)	129
BveI	ACCTGC	1 cut(s)	529
Cac8I	GCNNGC	1 cut(s)	460
Cfr10I	RCCGGY	1 cut(s)	323
Cfr13I	GGNCC	2 cut(s)	353, 616
Csp6I	GTAC	4 cut(s)	158, 447, 564, 1007
CviAII	CATG	7 cut(s)	196, 347, 455, 480, 613, 813, 1038
CviJI	RGCY	9 cut(s)	126, 235, 253, 261, 267, 327, 508, 585, 803
CviKI_1	RGCY	9 cut(s)	126, 235, 253, 261, 267, 327, 508, 585, 803
CviQI	GTAC	4 cut(s)	158, 447, 564, 1007
DdeI	CTNAG	5 cut(s)	174, 399, 509, 597, 620
DpnI	GATC	4 cut(s)	396, 426, 486, 717
DpnII	GATC	4 cut(s)	394, 424, 484, 715
EaeI	YGGCCR	1 cut(s)	325
Eam1104I	CTCTTC	2 cut(s)	137, 758
EarI	CTCTTC	2 cut(s)	137, 758
Eco130I	CCWWGG	1 cut(s)	18
Eco47I	GGWCC	2 cut(s)	353, 616
Eco57I	CTGAAG	2 cut(s)	120, 933
EcoRI	GAATTC	1 cut(s)	221
EcoRII	CCWGG	3 cut(s)	355, 519, 905
EcoT14I	CCWWGG	1 cut(s)	18
EcoT22I	ATGCAT	1 cut(s)	958
ErhI	CCWWGG	1 cut(s)	18
Esp3I	CGTCTC	1 cut(s)	170
FaeI	CATG	7 cut(s)	199, 350, 458, 483, 616, 816, 1041
FatI	CATG	7 cut(s)	195, 346, 454, 479, 612, 812, 1037
FauI	CCCGC	1 cut(s)	729
FbaI	TGATCA	1 cut(s)	424
Fnu4HI	GCNGC	4 cut(s)	678, 681, 801, 804
FokI	GGATG	2 cut(s)	315, 401
Fsp4HI	GCNGC	4 cut(s)	678, 681, 801, 804
FspBI	CTAG	2 cut(s)	6, 807
GluI	GCNGC	4 cut(s)	678, 681, 801, 804
HaeIII	GGCC	1 cut(s)	327
HapII	CCGG	5 cut(s)	218, 264, 312, 324, 725
Hin1II	CATG	7 cut(s)	199, 350, 458, 483, 616, 816, 1041
HinfI	GANTC	6 cut(s)	24, 200, 387, 411, 721, 939
HpaII	CCGG	5 cut(s)	218, 264, 312, 324, 725
Hpy166II	GTNNAC	1 cut(s)	931
Hpy188I	TCNGA	7 cut(s)	205, 243, 283, 512, 720, 778, 952
Hpy188III	TCNNGA	8 cut(s)	312, 398, 530, 619, 713, 725, 749, 868
Hpy8I	GTNNAC	1 cut(s)	931
Hpy99I	CGWCG	1 cut(s)	977
HpyAV	CCTTC	8 cut(s)	68, 108, 118, 124, 202, 595, 857, 957
HpyCH4IV	ACGT	2 cut(s)	160, 972
HpyCH4V	TGCA	6 cut(s)	168, 578, 800, 839, 893, 956
HpyF10VI	GCNNNNNNNGC	1 cut(s)	809
HpyF3I	CTNAG	5 cut(s)	174, 399, 509, 597, 620
HpySE526I	ACGT	2 cut(s)	160, 972
Hsp92II	CATG	7 cut(s)	199, 350, 458, 483, 616, 816, 1041
Kpn2I	TCCGGA	2 cut(s)	311, 724
Ksp22I	TGATCA	1 cut(s)	424
Kzo9I	GATC	4 cut(s)	394, 424, 484, 715
LmnI	GCTCC	3 cut(s)	266, 304, 703
Lsp1109I	GCAGC	4 cut(s)	664, 667, 790, 812
LweI	GCATC	3 cut(s)	685, 742, 943
MaeI	CTAG	2 cut(s)	6, 807
MaeII	ACGT	2 cut(s)	160, 972
MaeIII	GTNAC	3 cut(s)	13, 494, 604
MalI	GATC	4 cut(s)	396, 426, 486, 717
MbiI	CCGCTC	1 cut(s)	736
MboI	GATC	4 cut(s)	394, 424, 484, 715
MboII	GAAGA	7 cut(s)	36, 154, 335, 396, 479, 775, 890
MflI	RGATCY	1 cut(s)	484
MluCI	AATT	7 cut(s)	34, 148, 212, 221, 525, 772, 794
MmeI	TCCRAC	1 cut(s)	96
Mph1103I	ATGCAT	1 cut(s)	958
MroI	TCCGGA	2 cut(s)	311, 724
MseI	TTAA	3 cut(s)	65, 638, 770
MspA1I	CMGCKG	1 cut(s)	803
MspCI	CTTAAG	1 cut(s)	637
MspI	CCGG	5 cut(s)	218, 264, 312, 324, 725
MspR9I	CCNGG	3 cut(s)	357, 521, 907
MvaI	CCWGG	3 cut(s)	357, 521, 907
MwoI	GCNNNNNNNGC	1 cut(s)	809
NdeII	GATC	4 cut(s)	394, 424, 484, 715
NlaIII	CATG	7 cut(s)	199, 350, 458, 483, 616, 816, 1041
NlaIV	GGNNCC	1 cut(s)	354
NmuCI	GTSAC	2 cut(s)	13, 494
NsiI	ATGCAT	1 cut(s)	958
NspI	RCATGY	1 cut(s)	458
PfeI	GAWTC	6 cut(s)	24, 200, 387, 411, 721, 939
PflMI	CCANNNNNTGG	1 cut(s)	362
PfoI	TCCNGGA	1 cut(s)	355
PkrI	GCNGC	4 cut(s)	679, 682, 802, 805
Ppu21I	YACGTR	1 cut(s)	161
Psp6I	CCWGG	3 cut(s)	355, 519, 905
PspGI	CCWGG	3 cut(s)	355, 519, 905
PspN4I	GGNNCC	1 cut(s)	354
PspPI	GGNCC	2 cut(s)	353, 616
PsuI	RGATCY	1 cut(s)	484
PvuII	CAGCTG	1 cut(s)	803
RsaI	GTAC	4 cut(s)	159, 448, 565, 1008
RsaNI	GTAC	4 cut(s)	158, 447, 564, 1007
SaqAI	TTAA	3 cut(s)	65, 638, 770
SatI	GCNGC	4 cut(s)	678, 681, 801, 804
Sau3AI	GATC	4 cut(s)	394, 424, 484, 715
Sau96I	GGNCC	2 cut(s)	353, 616
ScaI	AGTACT	1 cut(s)	448
ScrFI	CCNGG	3 cut(s)	357, 521, 907
SfaNI	GCATC	3 cut(s)	685, 742, 943
SinI	GGWCC	2 cut(s)	353, 616
SmlI	CTYRAG	2 cut(s)	272, 637
SmoI	CTYRAG	2 cut(s)	272, 637
Sse9I	AATT	7 cut(s)	34, 148, 212, 221, 525, 772, 794
SsiI	CCGC	2 cut(s)	48, 736
SspMI	CTAG	2 cut(s)	6, 807
StyD4I	CCNGG	3 cut(s)	355, 519, 905
StyI	CCWWGG	1 cut(s)	18
TaiI	ACGT	2 cut(s)	163, 975
TaqI	TCGA	2 cut(s)	382, 975
TasI	AATT	7 cut(s)	34, 148, 212, 221, 525, 772, 794
TatI	WGTACW	1 cut(s)	446
TfiI	GAWTC	6 cut(s)	24, 200, 387, 411, 721, 939
Tru1I	TTAA	3 cut(s)	65, 638, 770
Tru9I	TTAA	3 cut(s)	65, 638, 770
TscAI	CASTG	1 cut(s)	136
TseFI	GTSAC	2 cut(s)	13, 494
TseI	GCWGC	4 cut(s)	677, 680, 800, 803
Tsp45I	GTSAC	2 cut(s)	13, 494
TspDTI	ATGAA	2 cut(s)	184, 335
TspRI	CASTG	1 cut(s)	136
Van91I	CCANNNNNTGG	1 cut(s)	362
Vha464I	CTTAAG	1 cut(s)	637
VpaK11BI	GGWCC	2 cut(s)	353, 616
XapI	RAATTY	5 cut(s)	34, 148, 221, 525, 772
XceI	RCATGY	1 cut(s)	458
XspI	CTAG	2 cut(s)	6, 807
ZrmI	AGTACT	1 cut(s)	448
Zsp2I	ATGCAT	1 cut(s)	958

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.