Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0007440

Physical Location & Seq

Genomic Coordinates Reverse (-)

18993003 .. 18996826

Gene Structure 3824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1115000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGATCGGATTGGGCACCTCCTTGGGAAAAGCGTCAAGTCCCGATTCCTATTTTTTGCCCTCCCTCCCCCTCACTGCCACCACCATCTCCACCTTCTCACTTTCCTCTCTCTCCTTCTCCTCCAACAACCTCACTGGGAAGAGGAATTCCCGGAATTCAGTTTTGCGCCGGCAGAGTGCGGGCTTCGAGAGCGAGCCGGAGCTAACGAGCGATTCGATGGAATCGGATAAGGAACTTCCCGAGTTTAGCCGGAACCTGTATCCGAATATCGAGCCCTACAGTTCCGGGTTTCTTAAGGTTTCGGATATTCACACACTCTATTGGGAGCAGTCTGGAAATCCCGACGGCCATCCTGTAGTTTTTCTTCATGGAGGTCCAGGAGGAGGAACTTCACCAAGTAATCGAAGATTCTTCGATCCTGAGTTTTACCGGATCATTCTATTTGATCAGAGGGGTGCGGGGCAAAGTACCCCACATGCTTGCTTGGTTGAAAACACGACATGGGATCTCATTAGTGACATTGAAAAGCTCAGGGAACACTTAGAAATTCCAGAATGGCAGGTTTTTGGTGGGTCATGGGGGAGCACACTTGCCCTTGCATATAGCCAATCACACCCTGACAAGGTTACTGGAATTGTTCTTAGAGGGATTTTTCTTTTAAGAAAGAAGGAGATTGATTGGTTTTATGAGGGTGGTGCTGCTGCCATATACCCAGATGCGTGGGAGCCATTTCGAGATCTTATTCCAGAAAATGAAAGGGGATGTTTTGTCGATGCCTACAAAAAGAGATTGAACTCCGATGACCAAGAAATTCAATATGCAGCTGCTAGAGCATGGACCATGTGGGAAATGATGACTGCCCATCTTCTTCCAAATAATGAGAACATCAAGAGAGGGGAGGACGACAAGTTTTCATTGGCCTTCGCAAGGATTGAAAATCATTACTTCGTGAACAAAGGATTTTTCCCTTCAGATGGATTCCTGTTAGATAACATTGATAAGATACGGCATATAAAAACAATGATCGTACAGGGAAGATATGATATGTGCTGCCCCATGATGTCAGCTTGGGATCTTCATAAAGCATGGCCGGAAGCTGATCTCAAAGTTGTTCAAGATGCTGGGCATTCTGCTAATGAACCAGGAATAGCTGAAGAACTTGTGGCTGCAAATGAGAAGCTGAAGCACATGAAGAAAGGACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00330 map00330

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

402

Amino Acids

45.22

Weight (kDa)

5.44

Isoelectric Point (pI)

50.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	118 - 380	3.4e-31	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	119 - 380	4.8e-09	Alpha/beta hydrolase family
Hydrolase_4	PF12146	143 - 223	3.7e-08	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14260 AT2G14260 AT2G14260 AT2G14260
fragaria_vesca	FvH4_2g02550
malus_domestica	MD10G1115000.v1.1
prunus_persica	Prupe.8G157100_v2.0.a1 Prupe.8G157100_v2.0.a1
pyrus_communis	pycom05g10790 pycom10g09950 pycom15g16330
rosa_chinensis	RchiOBHm_Chr6g0246361
rosa_laevigata	RLG00000015261
rosa_multiflora	Rmu_co8135098.1_g000001 Rmu_sc0001066.1_g000006 Rmu_sc0008965.1_g000003
rosa_roxburghii	Rroxscaffold_7G00214650
rosa_rugosa	Rorug05G0520500
rosa_samantha	Rh6AG034700 Rh6BG029800 Rh6CG030200 Rh6CG067300 Rh6DG029100
rosa_wichuraiana	Rw6G002810 Rw6G002970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	550
AccB1I	GGYRCC	1 cut(s)	14
AciI	CCGC	2 cut(s)	179, 458
AclWI	GGATC	4 cut(s)	410, 440, 513, 1080
AcoI	YGGCCR	2 cut(s)	346, 1088
AcsI	RAATTY	4 cut(s)	145, 154, 546, 810
AcuI	CTGAAG	3 cut(s)	954, 1173, 1202
AfaI	GTAC	2 cut(s)	469, 1029
AfiI	CCNNNNNNNGG	4 cut(s)	383, 622, 927, 974
AflII	CTTAAG	1 cut(s)	293
AgsI	TTSAA	6 cut(s)	491, 524, 793, 815, 935, 1115
AjnI	CCWGG	2 cut(s)	376, 1141
AluBI	AGCT	7 cut(s)	202, 529, 824, 1067, 1097, 1151, 1180
AluI	AGCT	7 cut(s)	202, 529, 824, 1067, 1097, 1151, 1180
Alw21I	GWGCWC	1 cut(s)	587
AlwI	GGATC	4 cut(s)	410, 440, 513, 1080
Ama87I	CYCGRG	1 cut(s)	239
AoxI	GGCC	3 cut(s)	346, 918, 1088
ApeKI	GCWGC	6 cut(s)	698, 701, 821, 824, 1050, 1166
ApoI	RAATTY	4 cut(s)	145, 154, 546, 810
AspLEI	GCGC	1 cut(s)	168
AspS9I	GGNCC	2 cut(s)	374, 837
AsuC2I	CCSGG	2 cut(s)	151, 286
AsuHPI	GGTGA	1 cut(s)	384
AvaI	CYCGRG	1 cut(s)	239
AvaII	GGWCC	2 cut(s)	374, 837
BaeGI	GKGCMC	1 cut(s)	17
BanI	GGYRCC	1 cut(s)	14
BanII	GRGCYC	1 cut(s)	276
BarI	GAAGNNNNNNTAC	2 cut(s)	348, 380
Bbv12I	GWGCWC	1 cut(s)	587
BbvI	GCAGC	6 cut(s)	685, 688, 811, 833, 1037, 1153
BccI	CCATC	5 cut(s)	92, 211, 357, 870, 968
BceAI	ACGGC	2 cut(s)	361, 1022
BciT130I	CCWGG	2 cut(s)	378, 1143
BciVI	GTATCC	1 cut(s)	270
BclI	TGATCA	1 cut(s)	445
BcnI	CCSGG	2 cut(s)	151, 286
BfaI	CTAG	1 cut(s)	828
BfmI	CTRYAG	2 cut(s)	277, 354
BfrI	CTTAAG	1 cut(s)	293
BfuAI	ACCTGC	1 cut(s)	550
BfuI	GTATCC	1 cut(s)	270
BglII	AGATCT	1 cut(s)	736
BisI	GCNGC	6 cut(s)	699, 702, 822, 825, 1051, 1167
BlsI	GCNGC	6 cut(s)	700, 703, 823, 826, 1052, 1168
Bme1390I	CCNGG	4 cut(s)	151, 286, 378, 1143
Bme18I	GGWCC	2 cut(s)	374, 837
BmeT110I	CYCGRG	1 cut(s)	239
BmgT120I	GGNCC	2 cut(s)	374, 837
BmiI	GGNNCC	3 cut(s)	16, 254, 726
BmrFI	CCNGG	4 cut(s)	151, 286, 378, 1143
BmrI	ACTGGG	1 cut(s)	144
BmsI	GCATC	3 cut(s)	706, 763, 1108
BmuI	ACTGGG	1 cut(s)	144
Bpu10I	CCTNAGC	1 cut(s)	530
BpuMI	CCSGG	2 cut(s)	151, 286
BsaJI	CCNNGG	1 cut(s)	21
BsaWI	WCCGGW	1 cut(s)	429
Bsc4I	CCNNNNNNNGG	4 cut(s)	383, 622, 927, 974
Bse118I	RCCGGY	1 cut(s)	168
Bse1I	ACTGG	2 cut(s)	139, 634
BseBI	CCWGG	2 cut(s)	378, 1143
BseDI	CCNNGG	1 cut(s)	21
BseGI	GGATG	2 cut(s)	349, 767
BseLI	CCNNNNNNNGG	4 cut(s)	383, 622, 927, 974
BseMII	CTCAG	2 cut(s)	411, 544
BseNI	ACTGG	2 cut(s)	139, 634
BseRI	GAGGAG	2 cut(s)	109, 396
BseSI	GKGCMC	1 cut(s)	17
BseXI	GCAGC	6 cut(s)	685, 688, 811, 833, 1037, 1153
BseYI	CCCAGC	1 cut(s)	1121
BshFI	GGCC	3 cut(s)	348, 920, 1090
BshNI	GGYRCC	1 cut(s)	14
BsiHKAI	GWGCWC	1 cut(s)	587
BsiHKCI	CYCGRG	1 cut(s)	239
BsiSI	CCGG	7 cut(s)	151, 169, 197, 250, 285, 430, 1091
BslFI	GGGAC	1 cut(s)	24
BslI	CCNNNNNNNGG	4 cut(s)	383, 622, 927, 974
BsmFI	GGGAC	1 cut(s)	24
BsmI	GAATGC	1 cut(s)	1126
BsnI	GGCC	3 cut(s)	348, 920, 1090
BsoBI	CYCGRG	1 cut(s)	239
Bsp1286I	GDGCHC	3 cut(s)	17, 276, 587
Bsp143I	GATC	9 cut(s)	3, 415, 432, 445, 505, 736, 1023, 1072, 1099
BspACI	CCGC	2 cut(s)	179, 458
BspANI	GGCC	3 cut(s)	348, 920, 1090
BspCNI	CTCAG	2 cut(s)	412, 543
BspLI	GGNNCC	3 cut(s)	16, 254, 726
BspMI	ACCTGC	1 cut(s)	550
BspPI	GGATC	4 cut(s)	410, 440, 513, 1080
BspT107I	GGYRCC	1 cut(s)	14
BspTI	CTTAAG	1 cut(s)	293
BsrFI	RCCGGY	1 cut(s)	168
BsrI	ACTGG	2 cut(s)	139, 634
BssAI	RCCGGY	1 cut(s)	168
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	9 cut(s)	3, 415, 432, 445, 505, 736, 1023, 1072, 1099
BssT1I	CCWWGG	1 cut(s)	21
Bst2UI	CCWGG	2 cut(s)	378, 1143
Bst4CI	ACNGT	1 cut(s)	281
Bst6I	CTCTTC	1 cut(s)	134
BstAFI	CTTAAG	1 cut(s)	293
BstC8I	GCNNGC	4 cut(s)	170, 181, 194, 481
BstDEI	CTNAG	4 cut(s)	420, 530, 541, 641
BstENI	CCTNNNNNAGG	1 cut(s)	925
BstF5I	GGATG	2 cut(s)	349, 767
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	9 cut(s)	6, 418, 435, 448, 508, 739, 1026, 1075, 1102
BstMBI	GATC	9 cut(s)	3, 415, 432, 445, 505, 736, 1023, 1072, 1099
BstMWI	GCNNNNNNNGC	2 cut(s)	189, 830
BstNI	CCWGG	2 cut(s)	378, 1143
BstNSI	RCATGY	1 cut(s)	479
BstSCI	CCNGG	4 cut(s)	149, 284, 376, 1141
BstSFI	CTRYAG	2 cut(s)	277, 354
BstSLI	GKGCMC	1 cut(s)	17
BstV1I	GCAGC	6 cut(s)	685, 688, 811, 833, 1037, 1153
BstX2I	RGATCY	3 cut(s)	505, 736, 1072
BstXI	CCANNNNNNTGG	1 cut(s)	720
BstYI	RGATCY	3 cut(s)	505, 736, 1072
BsuI	GTATCC	1 cut(s)	270
BsuRI	GGCC	3 cut(s)	348, 920, 1090
BtsCI	GGATG	2 cut(s)	349, 767
BtsI	GCAGTG	1 cut(s)	72
BtsIMutI	CAGTG	2 cut(s)	72, 132
BveI	ACCTGC	1 cut(s)	550
Cac8I	GCNNGC	4 cut(s)	170, 181, 194, 481
CfoI	GCGC	1 cut(s)	168
Cfr10I	RCCGGY	1 cut(s)	168
Cfr13I	GGNCC	2 cut(s)	374, 837
CseI	GACGC	1 cut(s)	21
Csp6I	GTAC	2 cut(s)	468, 1028
CviAII	CATG	9 cut(s)	368, 476, 501, 576, 834, 841, 1057, 1086, 1189
CviQI	GTAC	2 cut(s)	468, 1028
DdeI	CTNAG	4 cut(s)	420, 530, 541, 641
DpnI	GATC	9 cut(s)	5, 417, 434, 447, 507, 738, 1025, 1074, 1101
DpnII	GATC	9 cut(s)	3, 415, 432, 445, 505, 736, 1023, 1072, 1099
EaeI	YGGCCR	2 cut(s)	346, 1088
Eam1104I	CTCTTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	134
Eco130I	CCWWGG	1 cut(s)	21
Eco24I	GRGCYC	1 cut(s)	276
Eco47I	GGWCC	2 cut(s)	374, 837
Eco57I	CTGAAG	3 cut(s)	954, 1173, 1202
Eco88I	CYCGRG	1 cut(s)	239
EcoNI	CCTNNNNNAGG	1 cut(s)	925
EcoRI	GAATTC	2 cut(s)	145, 154
EcoRII	CCWGG	2 cut(s)	376, 1141
EcoT14I	CCWWGG	1 cut(s)	21
EcoT38I	GRGCYC	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	21
FaeI	CATG	9 cut(s)	371, 479, 504, 579, 837, 844, 1060, 1089, 1192
FaqI	GGGAC	1 cut(s)	24
FatI	CATG	9 cut(s)	367, 475, 500, 575, 833, 840, 1056, 1085, 1188
FauI	CCCGC	2 cut(s)	172, 451
FbaI	TGATCA	1 cut(s)	445
Fnu4HI	GCNGC	6 cut(s)	699, 702, 822, 825, 1051, 1167
FokI	GGATG	2 cut(s)	336, 774
FriOI	GRGCYC	1 cut(s)	276
Fsp4HI	GCNGC	6 cut(s)	699, 702, 822, 825, 1051, 1167
FspBI	CTAG	1 cut(s)	828
GlaI	GCGC	1 cut(s)	167
GluI	GCNGC	6 cut(s)	699, 702, 822, 825, 1051, 1167
GsaI	CCCAGC	1 cut(s)	1125
HaeIII	GGCC	3 cut(s)	348, 920, 1090
HapII	CCGG	7 cut(s)	151, 169, 197, 250, 285, 430, 1091
HgaI	GACGC	1 cut(s)	21
HhaI	GCGC	1 cut(s)	168
Hin1II	CATG	9 cut(s)	371, 479, 504, 579, 837, 844, 1060, 1089, 1192
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HinfI	GANTC	5 cut(s)	44, 212, 221, 408, 978
HpaII	CCGG	7 cut(s)	151, 169, 197, 250, 285, 430, 1091
HphI	GGTGA	1 cut(s)	384
Hpy166II	GTNNAC	1 cut(s)	952
Hpy188I	TCNGA	7 cut(s)	8, 226, 264, 304, 450, 799, 973
Hpy8I	GTNNAC	1 cut(s)	952
Hpy99I	CGWCG	1 cut(s)	347
HpyAV	CCTTC	5 cut(s)	103, 124, 661, 931, 978
HpyCH4III	ACNGT	1 cut(s)	281
HpyCH4V	TGCA	3 cut(s)	599, 821, 1169
HpyF10VI	GCNNNNNNNGC	2 cut(s)	189, 830
HpyF3I	CTNAG	4 cut(s)	420, 530, 541, 641
Hsp92II	CATG	9 cut(s)	371, 479, 504, 579, 837, 844, 1060, 1089, 1192
HspAI	GCGC	1 cut(s)	166
KroI	GCCGGC	1 cut(s)	168
KroNI	GCCGGC	1 cut(s)	170
Ksp22I	TGATCA	1 cut(s)	445
Kzo9I	GATC	9 cut(s)	3, 415, 432, 445, 505, 736, 1023, 1072, 1099
LmnI	GCTCC	4 cut(s)	199, 325, 582, 724
Lsp1109I	GCAGC	6 cut(s)	685, 688, 811, 833, 1037, 1153
LweI	GCATC	3 cut(s)	706, 763, 1108
MaeI	CTAG	1 cut(s)	828
MaeIII	GTNAC	2 cut(s)	515, 625
MalI	GATC	9 cut(s)	5, 417, 434, 447, 507, 738, 1025, 1074, 1101
MboI	GATC	9 cut(s)	3, 415, 432, 445, 505, 736, 1023, 1072, 1099
MflI	RGATCY	3 cut(s)	505, 736, 1072
MhlI	GDGCHC	3 cut(s)	17, 276, 587
MluCI	AATT	5 cut(s)	145, 154, 546, 633, 810
MmeI	TCCRAC	1 cut(s)	147
MroNI	GCCGGC	1 cut(s)	168
MseI	TTAA	2 cut(s)	294, 659
MspA1I	CMGCKG	1 cut(s)	824
MspCI	CTTAAG	1 cut(s)	293
MspI	CCGG	7 cut(s)	151, 169, 197, 250, 285, 430, 1091
MspR9I	CCNGG	4 cut(s)	151, 286, 378, 1143
Mva1269I	GAATGC	1 cut(s)	1126
MvaI	CCWGG	2 cut(s)	378, 1143
MwoI	GCNNNNNNNGC	2 cut(s)	189, 830
NaeI	GCCGGC	1 cut(s)	170
NciI	CCSGG	2 cut(s)	151, 286
NdeII	GATC	9 cut(s)	3, 415, 432, 445, 505, 736, 1023, 1072, 1099
NgoMIV	GCCGGC	1 cut(s)	168
NlaIII	CATG	9 cut(s)	371, 479, 504, 579, 837, 844, 1060, 1089, 1192
NlaIV	GGNNCC	3 cut(s)	16, 254, 726
NmuCI	GTSAC	1 cut(s)	515
NspI	RCATGY	1 cut(s)	479
PcsI	WCGNNNNNNNCGW	1 cut(s)	212
PctI	GAATGC	1 cut(s)	1126
PdiI	GCCGGC	1 cut(s)	170
PfeI	GAWTC	5 cut(s)	44, 212, 221, 408, 978
PfoI	TCCNGGA	2 cut(s)	149, 376
PkrI	GCNGC	6 cut(s)	700, 703, 823, 826, 1052, 1168
Psp6I	CCWGG	2 cut(s)	376, 1141
PspFI	CCCAGC	1 cut(s)	1121
PspGI	CCWGG	2 cut(s)	376, 1141
PspN4I	GGNNCC	3 cut(s)	16, 254, 726
PspPI	GGNCC	2 cut(s)	374, 837
PsuI	RGATCY	3 cut(s)	505, 736, 1072
PvuII	CAGCTG	1 cut(s)	824
RsaI	GTAC	2 cut(s)	469, 1029
RsaNI	GTAC	2 cut(s)	468, 1028
SaqAI	TTAA	2 cut(s)	294, 659
SatI	GCNGC	6 cut(s)	699, 702, 822, 825, 1051, 1167
Sau3AI	GATC	9 cut(s)	3, 415, 432, 445, 505, 736, 1023, 1072, 1099
Sau96I	GGNCC	2 cut(s)	374, 837
ScrFI	CCNGG	4 cut(s)	151, 286, 378, 1143
SduI	GDGCHC	3 cut(s)	17, 276, 587
SfaNI	GCATC	3 cut(s)	706, 763, 1108
SfcI	CTRYAG	2 cut(s)	277, 354
SinI	GGWCC	2 cut(s)	374, 837
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
Sse9I	AATT	5 cut(s)	145, 154, 546, 633, 810
SsiI	CCGC	2 cut(s)	179, 458
SspMI	CTAG	1 cut(s)	828
StyD4I	CCNGG	4 cut(s)	149, 284, 376, 1141
StyI	CCWWGG	1 cut(s)	21
TaaI	ACNGT	1 cut(s)	281
TaqI	TCGA	7 cut(s)	186, 215, 270, 403, 414, 733, 771
TasI	AATT	5 cut(s)	145, 154, 546, 633, 810
TfiI	GAWTC	5 cut(s)	44, 212, 221, 408, 978
Tru1I	TTAA	2 cut(s)	294, 659
Tru9I	TTAA	2 cut(s)	294, 659
TscAI	CASTG	2 cut(s)	79, 139
TseFI	GTSAC	1 cut(s)	515
TseI	GCWGC	6 cut(s)	698, 701, 821, 824, 1050, 1166
Tsp45I	GTSAC	1 cut(s)	515
TspDTI	ATGAA	6 cut(s)	356, 768, 903, 1067, 1152, 1205
TspRI	CASTG	2 cut(s)	79, 139
Vha464I	CTTAAG	1 cut(s)	293
VpaK11BI	GGWCC	2 cut(s)	374, 837
XagI	CCTNNNNNAGG	1 cut(s)	925
XapI	RAATTY	4 cut(s)	145, 154, 546, 810
XceI	RCATGY	1 cut(s)	479
XspI	CTAG	1 cut(s)	828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.