Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003614

Physical Location & Seq

Genomic Coordinates Reverse (-)

70578834 .. 70582710

Gene Structure 3877 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0520500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2094 bp

ATGCTTTTTCTATTCCTAGTGGGTGTTAAAATGGATTTGAGTATAGTCAGACGGTCGGGAAAGAAAGCTGTGGTCATAGGCCTCTCGGCATTTTTCGTCCCTTTGGTTCTAAATGTAGGCTTCGCTCTCGTTCTGCAACGTACGGTCACCATGGAACCCCAGTTGCACAAATCACTTGTAGCCATAGCAGTGTTTCAGTGCCTAAGTAGCTTCCACGTCATCGGTTGTCTCTTGGGCGATTTGAAGCTCCTAAACTCGGAGCTTGGTCGTTTGGCTGTGTCTTCTTCGATGATTAGCGGAGTCATATCTTGGATTTGGGTCATCCTGGCCTTCACAGTACGGCTAAGCACCATGAAAAAGACCGGAAACTTGCCTTTTATGGGTTTAAGTTTAGCCGCATTGTTTGTTCTAATTATATTCATAATGAGGCCAATAATGCTGTGGATGGTTGCCCAAACAGCTAAAGGCAAACCCATTAAAGAGAGCTACATAGTCTCCATCTTCATCATGGTCTTGATTTGTTCCCTACTCGGTGAGATTGTGGGCCAGCATTTTTTGCTTGGGCCTATGGTTTTGGGCCTCGCCGTGCCGGACGGCCCGCCTTTGGGGTCAGCATTGGTGGAGAAACTTGACTCGTACGTTTCCAACATTCTGTTGCCGAGCTACTTTCTGTTCACTGGTGCAAGAATCAATTTGAGTGAAATCAGAATGAAGACTGTTGGGATTGTGGAGGTGCTGGCTCTCAGTAGCTTTTGTGGTAAAGTATTAGGGACCATGGTGCCTTCACTGTATTGCAAAATGCCTGCTATCGACGCACTTTCATTAGGGCTCATCATGAGTGCCCAAGGCATCACCGACCTTCTTGTCTTGCAACATGGAATGCTACTCTTGCTCATTGACGGAGAATGCTACAGCATCATGATTATGTCATCGGTTTTATTTACTGGAATCATCACCCCCATAGTGAAATTTCTGTACAACCCCTCTAAGAGATACAAGTCCACAAAGCGAAGACGAACCATTGAGCATTCCTTGCCAAACATGGAACTCGGACTTCTTGTCTGCATGTTCCACCAAGACAGCACTCCCTCCATCATCAACCTAATAGAAGTCTTCAATCCAACCCCCAAGAGCCCCATTTGCTTCTGCGTTGTCCACCTCATCCGTCTCTCAGGTCGAACAGCTCCAGTCCTCATAACCCACAGACCCGGGAAAAGCGCCTCTTTACACTCAAACAACTACTCCGATCACATAATCAATGCCTTCAGATTGTACCAAGAACACAATGCCAGCAGTGTCATAATGAATGCATTCACCGCAATTGCGCCCTATGCCACAATGCACGACGAGGTTTGCACACTTGCTTTTGAAAAAAGGACTTCCATGATAATAATCCCATTTCACAAGTTTTTCAGTGCCATCCAATGCACCGAAGAATTAGCGCATCCAATCAGGTCTGTCAACAGAAATATTCTTCAAAATGCTCCGTGCTCCCTTGGGATTCTTGTAGACCGAGGTACGTTGAATAAAAAACCATCCGCTTTACACACTTCTATATCAGGAAGAAGTTTGTACAGCGTTGGGACGATCTTTGTTGAGGGACCTGATGACCGCGAAGCATTGGCGTTAGCGACGCGGATGGCTGGAAACCCCAATGTCAGCCTAACCGTTACCAAATTTACAGATCCCAAGCAAAATAGAACTCAGAAAGAGATCGATTCGGAAGTTATAATGAAGTATAAGACAGCCATTGATGGCAAAAAACAGCATGTCTACAAAGAGGTACATGTTAAAGATAGCGTTGACATGATCAATGAGATTAGATCGATGGAGAATTTTTTCGACCTAATTCTGGTGGGGAGAAGACATGATAGTGATTCGCCGTTGTTCATGGGACTTACCGAATGGAATGAGTTTCCGGAACTAGGGTTCCTCGGAGACATGTTAGCATCTTTTGATGCAAATTGCGAGGTGTCAGTGCTGGTGGTGCAGCAACAATCGTTTGGATGTGCTGAAAAAGAGAAGACTGATATCTTTAAATGCCATGTGAAGGATTCATTTTCTGTAGTGGATATACCTCATAATCGACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00330 map00330

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

697

Amino Acids

77.2

Weight (kDa)

8.82

Isoelectric Point (pI)

42.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	2 - 322	4.1e-28	Sodium/hydrogen exchanger, transmembrane
CHX17_2nd	PF23256	383 - 507	2.5e-15	Plant cation/H(+) antiporter domain
CHX17_C	PF23259	526 - 666	6e-12	Plant cation/H(+) antiporter, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17000 AT4G17000 AT4G17000
fragaria_vesca	FvH4_2g02560 FvH4_2g02560 FvH4_2g02560 FvH4_2g02560 FvH4_2g02560
malus_domestica	MD05G1112300.v1.1 MD10G1114900.v1.1
prunus_persica	Prupe.8G156900_v2.0.a1 Prupe.8G157000_v2.0.a1
pyrus_communis	pycom02g05590 pycom05g07390 pycom05g10780 pycom07g10710 pycom12g10280 pycom16g18860
rosa_chinensis	RchiOBHm_Chr6g0246371 RchiOBHm_Chr6g0246451 RchiOBHm_Chr6g0246631 RchiOBHm_Chr6g0246641
rosa_laevigata	RLG00000000929 RLG00000015260
rosa_multiflora	Rmu_sc0001066.1_g000005 Rmu_sc0008965.1_g000002
rosa_roxburghii	Rroxscaffold_7G00214640
rosa_rugosa	Rorug05G0520500
rosa_samantha	Rh6AG034800 Rh6AG035100 Rh6BG029900 Rh6CG030300 Rh6DG029200
rosa_wichuraiana	Rw6G002820 Rw6G002980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1730
AasI	GACNNNNNNGTC	1 cut(s)	863
AccB1I	GGYRCC	1 cut(s)	778
AccI	GTMKAC	2 cut(s)	1509, 1773
AccII	CGCG	2 cut(s)	1614, 1636
AccIII	TCCGGA	1 cut(s)	1918
AciI	CCGC	7 cut(s)	297, 396, 599, 1317, 1539, 1612, 1636
AclWI	GGATC	1 cut(s)	1679
AcsI	RAATTY	3 cut(s)	968, 1676, 1834
AcuI	CTGAAG	1 cut(s)	1249
AfaI	GTAC	8 cut(s)	142, 339, 638, 977, 1274, 1519, 1574, 1785
AfiI	CCNNNNNNNGG	7 cut(s)	256, 380, 604, 605, 1852, 1925, 2050
AflIII	ACRYGT	2 cut(s)	1786, 1941
AgsI	TTSAA	5 cut(s)	244, 1117, 1370, 1478, 1525
AhdI	GACNNNNNGTC	1 cut(s)	1058
AjiI	CACGTC	1 cut(s)	217
AjnI	CCWGG	1 cut(s)	324
AloI	GAACNNNNNNTCC	4 cut(s)	1913, 1914, 1945, 1946
AluBI	AGCT	9 cut(s)	68, 210, 247, 262, 461, 486, 663, 750, 1184
AluI	AGCT	9 cut(s)	68, 210, 247, 262, 461, 486, 663, 750, 1184
Alw21I	GWGCWC	1 cut(s)	1493
Alw26I	GTCTC	4 cut(s)	233, 499, 1172, 1932
AlwI	GGATC	1 cut(s)	1679
Ama87I	CYCGRG	1 cut(s)	1208
Aor13HI	TCCGGA	1 cut(s)	1918
AoxI	GGCC	7 cut(s)	79, 327, 428, 544, 563, 577, 595
ApeKI	GCWGC	1 cut(s)	1990
ApoI	RAATTY	3 cut(s)	968, 1676, 1834
Asp700I	GAANNNNTTC	2 cut(s)	1310, 1838
AspLEI	GCGC	3 cut(s)	1220, 1327, 1444
AspS9I	GGNCC	6 cut(s)	544, 563, 577, 596, 771, 1601
AsuC2I	CCSGG	2 cut(s)	1209, 1210
AsuHPI	GGTGA	5 cut(s)	139, 545, 844, 946, 1306
AvaI	CYCGRG	1 cut(s)	1208
AvaII	GGWCC	2 cut(s)	771, 1601
BaeGI	GKGCMC	1 cut(s)	844
BanI	GGYRCC	1 cut(s)	778
BanII	GRGCYC	2 cut(s)	831, 1136
BbsI	GAAGAC	6 cut(s)	273, 719, 1018, 1105, 1870, 2030
Bbv12I	GWGCWC	1 cut(s)	1493
BbvI	GCAGC	1 cut(s)	2002
BccI	CCATC	8 cut(s)	439, 506, 1100, 1427, 1543, 1633, 1748, 1822
BceAI	ACGGC	4 cut(s)	356, 569, 610, 1867
BciT130I	CCWGG	1 cut(s)	326
BclI	TGATCA	1 cut(s)	1809
BcnI	CCSGG	2 cut(s)	1209, 1210
BcoDI	GTCTC	4 cut(s)	233, 499, 1172, 1932
BfaI	CTAG	2 cut(s)	17, 1925
BfmI	CTRYAG	2 cut(s)	910, 2064
BfoI	RGCGCY	1 cut(s)	1221
BisI	GCNGC	2 cut(s)	396, 1991
BlpI	GCTNAGC	1 cut(s)	344
BlsI	GCNGC	2 cut(s)	397, 1992
Bme1390I	CCNGG	3 cut(s)	326, 1209, 1210
Bme18I	GGWCC	2 cut(s)	771, 1601
BmeRI	GACNNNNNGTC	1 cut(s)	1058
BmeT110I	CYCGRG	1 cut(s)	1208
BmgBI	CACGTC	1 cut(s)	217
BmgT120I	GGNCC	6 cut(s)	544, 563, 577, 596, 771, 1601
BmiI	GGNNCC	5 cut(s)	156, 772, 780, 1602, 1931
BmrFI	CCNGG	3 cut(s)	326, 1209, 1210
BmrI	ACTGGG	1 cut(s)	154
BmsI	GCATC	5 cut(s)	858, 924, 1453, 1948, 1958
BmuI	ACTGGG	1 cut(s)	154
BpiI	GAAGAC	6 cut(s)	273, 719, 1018, 1105, 1870, 2030
BpmI	CTGGAG	1 cut(s)	1170
Bpu1102I	GCTNAGC	1 cut(s)	344
BpuMI	CCSGG	2 cut(s)	1209, 1210
Bsa29I	ATCGAT	2 cut(s)	1716, 1826
BsaBI	GATNNNNATC	1 cut(s)	1391
BsaJI	CCNNGG	7 cut(s)	150, 774, 844, 1208, 1495, 1513, 1933
BsaWI	WCCGGW	2 cut(s)	362, 1918
BsaXI	ACNNNNNCTCC	4 cut(s)	479, 509, 1226, 1256
Bsc4I	CCNNNNNNNGG	7 cut(s)	256, 380, 604, 605, 1852, 1925, 2050
Bse1I	ACTGG	4 cut(s)	160, 682, 949, 1187
Bse8I	GATNNNNATC	1 cut(s)	1391
BseAI	TCCGGA	1 cut(s)	1918
BseBI	CCWGG	1 cut(s)	326
BseCI	ATCGAT	2 cut(s)	1716, 1826
BseDI	CCNNGG	7 cut(s)	150, 774, 844, 1208, 1495, 1513, 1933
BseGI	GGATG	8 cut(s)	321, 450, 1161, 1419, 1444, 1535, 1644, 2012
BseJI	GATNNNNATC	1 cut(s)	1391
BseLI	CCNNNNNNNGG	7 cut(s)	256, 380, 604, 605, 1852, 1925, 2050
BseMII	CTCAG	3 cut(s)	757, 1185, 1718
BseNI	ACTGG	4 cut(s)	160, 682, 949, 1187
BseSI	GKGCMC	1 cut(s)	844
BseXI	GCAGC	1 cut(s)	2002
BsgI	GTGCAG	1 cut(s)	2009
Bsh1236I	CGCG	2 cut(s)	1614, 1636
Bsh1285I	CGRYCG	1 cut(s)	56
BshFI	GGCC	7 cut(s)	81, 329, 430, 546, 565, 579, 597
BshNI	GGYRCC	1 cut(s)	778
BshVI	ATCGAT	2 cut(s)	1716, 1826
BsiEI	CGRYCG	1 cut(s)	56
BsiHKAI	GWGCWC	1 cut(s)	1493
BsiHKCI	CYCGRG	1 cut(s)	1208
BsiSI	CCGG	4 cut(s)	363, 590, 1209, 1919
BsiWI	CGTACG	2 cut(s)	140, 636
BslFI	GGGAC	5 cut(s)	83, 784, 1597, 1614, 1908
BslI	CCNNNNNNNGG	7 cut(s)	256, 380, 604, 605, 1852, 1925, 2050
BsmAI	GTCTC	4 cut(s)	233, 499, 1172, 1932
BsmBI	CGTCTC	1 cut(s)	1172
BsmFI	GGGAC	5 cut(s)	83, 784, 1597, 1614, 1908
BsmI	GAATGC	5 cut(s)	885, 911, 1027, 1310, 1312
BsnI	GGCC	7 cut(s)	81, 329, 430, 546, 565, 579, 597
BsoBI	CYCGRG	1 cut(s)	1208
Bsp1286I	GDGCHC	4 cut(s)	831, 844, 1136, 1493
Bsp13I	TCCGGA	1 cut(s)	1918
Bsp1407I	TGTACA	2 cut(s)	975, 1572
Bsp143I	GATC	6 cut(s)	1246, 1587, 1684, 1713, 1809, 1823
Bsp1720I	GCTNAGC	1 cut(s)	344
Bsp19I	CCATGG	2 cut(s)	150, 774
BspACI	CCGC	7 cut(s)	297, 396, 599, 1317, 1539, 1612, 1636
BspANI	GGCC	7 cut(s)	81, 329, 430, 546, 565, 579, 597
BspCNI	CTCAG	3 cut(s)	756, 1184, 1717
BspDI	ATCGAT	2 cut(s)	1716, 1826
BspEI	TCCGGA	1 cut(s)	1918
BspFNI	CGCG	2 cut(s)	1614, 1636
BspHI	TCATGA	2 cut(s)	834, 918
BspLI	GGNNCC	5 cut(s)	156, 772, 780, 1602, 1931
BspPI	GGATC	1 cut(s)	1679
BspT107I	GGYRCC	1 cut(s)	778
BsrGI	TGTACA	2 cut(s)	975, 1572
BsrI	ACTGG	4 cut(s)	160, 682, 949, 1187
BssECI	CCNNGG	7 cut(s)	150, 774, 844, 1208, 1495, 1513, 1933
BssMI	GATC	6 cut(s)	1246, 1587, 1684, 1713, 1809, 1823
BssT1I	CCWWGG	4 cut(s)	150, 774, 844, 1495
Bst2UI	CCWGG	1 cut(s)	326
Bst4CI	ACNGT	6 cut(s)	54, 145, 337, 718, 789, 1669
BstAPI	GCANNNNNTGC	2 cut(s)	556, 1033
BstAUI	TGTACA	2 cut(s)	975, 1572
BstC8I	GCNNGC	5 cut(s)	548, 599, 738, 804, 1291
BstDEI	CTNAG	6 cut(s)	203, 344, 743, 987, 1171, 1704
BstDSI	CCRYGG	2 cut(s)	150, 774
BstEII	GGTNACC	1 cut(s)	145
BstF5I	GGATG	8 cut(s)	321, 450, 1161, 1419, 1444, 1535, 1644, 2012
BstFNI	CGCG	2 cut(s)	1614, 1636
BstH2I	RGCGCY	1 cut(s)	1221
BstHHI	GCGC	3 cut(s)	1220, 1327, 1444
BstKTI	GATC	6 cut(s)	1249, 1590, 1687, 1716, 1812, 1826
BstMAI	GTCTC	4 cut(s)	233, 499, 1172, 1932
BstMBI	GATC	6 cut(s)	1246, 1587, 1684, 1713, 1809, 1823
BstMCI	CGRYCG	1 cut(s)	56
BstNI	CCWGG	1 cut(s)	326
BstNSI	RCATGY	4 cut(s)	1069, 1772, 1790, 1945
BstPI	GGTNACC	1 cut(s)	145
BstSCI	CCNGG	3 cut(s)	324, 1207, 1208
BstSFI	CTRYAG	2 cut(s)	910, 2064
BstSLI	GKGCMC	1 cut(s)	844
BstUI	CGCG	2 cut(s)	1614, 1636
BstV1I	GCAGC	1 cut(s)	2002
BstV2I	GAAGAC	6 cut(s)	273, 719, 1018, 1105, 1870, 2030
BstX2I	RGATCY	1 cut(s)	1684
BstYI	RGATCY	1 cut(s)	1684
Bsu15I	ATCGAT	2 cut(s)	1716, 1826
BsuRI	GGCC	7 cut(s)	81, 329, 430, 546, 565, 579, 597
BsuTUI	ATCGAT	2 cut(s)	1716, 1826
BtgI	CCRYGG	2 cut(s)	150, 774
BtrI	CACGTC	1 cut(s)	217
BtsCI	GGATG	8 cut(s)	321, 450, 1161, 1419, 1444, 1535, 1644, 2012
BtsI	GCAGTG	2 cut(s)	195, 1300
BtsIMutI	CAGTG	7 cut(s)	195, 203, 675, 785, 1300, 1420, 1983
Cac8I	GCNNGC	5 cut(s)	548, 599, 738, 804, 1291
CciI	TCATGA	2 cut(s)	834, 918
CfoI	GCGC	3 cut(s)	1220, 1327, 1444
Cfr13I	GGNCC	6 cut(s)	544, 563, 577, 596, 771, 1601
Cfr9I	CCCGGG	1 cut(s)	1208
ClaI	ATCGAT	2 cut(s)	1716, 1826
CseI	GACGC	2 cut(s)	821, 1642
Csp6I	GTAC	8 cut(s)	141, 338, 637, 976, 1273, 1518, 1573, 1784
CviQI	GTAC	8 cut(s)	141, 338, 637, 976, 1273, 1518, 1573, 1784
DdeI	CTNAG	6 cut(s)	203, 344, 743, 987, 1171, 1704
DpnI	GATC	6 cut(s)	1248, 1589, 1686, 1715, 1811, 1825
DpnII	GATC	6 cut(s)	1246, 1587, 1684, 1713, 1809, 1823
DraI	TTTAAA	1 cut(s)	2038
DrdI	GACNNNNNNGTC	1 cut(s)	863
DriI	GACNNNNNGTC	1 cut(s)	1058
DseDI	GACNNNNNNGTC	1 cut(s)	863
Eam1105I	GACNNNNNGTC	1 cut(s)	1058
Eco130I	CCWWGG	4 cut(s)	150, 774, 844, 1495
Eco147I	AGGCCT	1 cut(s)	81
Eco24I	GRGCYC	2 cut(s)	831, 1136
Eco32I	GATATC	1 cut(s)	2032
Eco47I	GGWCC	2 cut(s)	771, 1601
Eco57I	CTGAAG	1 cut(s)	1249
Eco88I	CYCGRG	1 cut(s)	1208
Eco91I	GGTNACC	1 cut(s)	145
EcoO109I	RGGNCCY	1 cut(s)	1601
EcoO65I	GGTNACC	1 cut(s)	145
EcoRII	CCWGG	1 cut(s)	324
EcoRV	GATATC	1 cut(s)	2032
EcoT14I	CCWWGG	4 cut(s)	150, 774, 844, 1495
EcoT22I	ATGCAT	1 cut(s)	1312
EcoT38I	GRGCYC	2 cut(s)	831, 1136
ErhI	CCWWGG	4 cut(s)	150, 774, 844, 1495
Esp3I	CGTCTC	1 cut(s)	1172
FalI	AAGNNNNNCTT	2 cut(s)	1207, 1239
FaqI	GGGAC	5 cut(s)	83, 784, 1597, 1614, 1908
FauI	CCCGC	1 cut(s)	606
FbaI	TGATCA	1 cut(s)	1809
FblI	GTMKAC	2 cut(s)	1509, 1773
Fnu4HI	GCNGC	2 cut(s)	396, 1991
FokI	GGATG	8 cut(s)	308, 457, 1148, 1406, 1431, 1522, 1651, 2019
FriOI	GRGCYC	2 cut(s)	831, 1136
Fsp4HI	GCNGC	2 cut(s)	396, 1991
FspBI	CTAG	2 cut(s)	17, 1925
GlaI	GCGC	3 cut(s)	1219, 1326, 1443
GluI	GCNGC	2 cut(s)	396, 1991
GsuI	CTGGAG	1 cut(s)	1170
HaeII	RGCGCY	1 cut(s)	1221
HaeIII	GGCC	7 cut(s)	81, 329, 430, 546, 565, 579, 597
HapII	CCGG	4 cut(s)	363, 590, 1209, 1919
HgaI	GACGC	2 cut(s)	821, 1642
HhaI	GCGC	3 cut(s)	1220, 1327, 1444
Hin6I	GCGC	3 cut(s)	1218, 1325, 1442
HinP1I	GCGC	3 cut(s)	1218, 1325, 1442
HincII	GTYRAC	2 cut(s)	1462, 1804
HindII	GTYRAC	2 cut(s)	1462, 1804
HinfI	GANTC	8 cut(s)	300, 632, 687, 948, 1501, 1718, 1877, 2054
HpaII	CCGG	4 cut(s)	363, 590, 1209, 1919
HphI	GGTGA	5 cut(s)	139, 545, 844, 946, 1306
Hpy166II	GTNNAC	7 cut(s)	675, 1002, 1156, 1462, 1510, 1774, 1804
Hpy188I	TCNGA	9 cut(s)	50, 259, 707, 1052, 1246, 1268, 1707, 1723, 1937
Hpy188III	TCNNGA	6 cut(s)	57, 514, 835, 919, 1560, 1919
Hpy8I	GTNNAC	7 cut(s)	675, 1002, 1156, 1462, 1510, 1774, 1804
Hpy99I	CGWCG	3 cut(s)	815, 1349, 1636
HpyAV	CCTTC	5 cut(s)	340, 792, 869, 1273, 2044
HpyCH4III	ACNGT	6 cut(s)	54, 145, 337, 718, 789, 1669
HpyCH4IV	ACGT	4 cut(s)	139, 216, 639, 1520
HpyF3I	CTNAG	6 cut(s)	203, 344, 743, 987, 1171, 1704
HpySE526I	ACGT	4 cut(s)	139, 216, 639, 1520
HspAI	GCGC	3 cut(s)	1218, 1325, 1442
Kpn2I	TCCGGA	1 cut(s)	1918
Ksp22I	TGATCA	1 cut(s)	1809
Kzo9I	GATC	6 cut(s)	1246, 1587, 1684, 1713, 1809, 1823
LmnI	GCTCC	5 cut(s)	252, 259, 1189, 1489, 1496
Lsp1109I	GCAGC	1 cut(s)	2002
LweI	GCATC	5 cut(s)	858, 924, 1453, 1948, 1958
MaeI	CTAG	2 cut(s)	17, 1925
MaeII	ACGT	4 cut(s)	139, 216, 639, 1520
MaeIII	GTNAC	2 cut(s)	145, 1669
MalI	GATC	6 cut(s)	1248, 1589, 1686, 1715, 1811, 1825
MboI	GATC	6 cut(s)	1246, 1587, 1684, 1713, 1809, 1823
MfeI	CAATTG	1 cut(s)	1320
MflI	RGATCY	1 cut(s)	1684
MhlI	GDGCHC	4 cut(s)	831, 844, 1136, 1493
MluCI	AATT	9 cut(s)	411, 691, 968, 1320, 1436, 1676, 1834, 1848, 1963
MlyI	GAGTC	2 cut(s)	309, 626
MmeI	TCCRAC	2 cut(s)	669, 1145
Mph1103I	ATGCAT	1 cut(s)	1312
MroI	TCCGGA	1 cut(s)	1918
MroXI	GAANNNNTTC	2 cut(s)	1310, 1838
MseI	TTAA	6 cut(s)	27, 386, 477, 1791, 2037, 2092
MslI	CAYNNNNRTG	3 cut(s)	188, 923, 1872
MspI	CCGG	4 cut(s)	363, 590, 1209, 1919
MspR9I	CCNGG	3 cut(s)	326, 1209, 1210
MunI	CAATTG	1 cut(s)	1320
Mva1269I	GAATGC	5 cut(s)	885, 911, 1027, 1310, 1312
MvaI	CCWGG	1 cut(s)	326
MvnI	CGCG	2 cut(s)	1614, 1636
NciI	CCSGG	2 cut(s)	1209, 1210
NcoI	CCATGG	2 cut(s)	150, 774
NdeII	GATC	6 cut(s)	1246, 1587, 1684, 1713, 1809, 1823
NlaIV	GGNNCC	5 cut(s)	156, 772, 780, 1602, 1931
NmeAIII	GCCGAG	2 cut(s)	65, 684
NmuCI	GTSAC	1 cut(s)	145
NsiI	ATGCAT	1 cut(s)	1312
NspI	RCATGY	4 cut(s)	1069, 1772, 1790, 1945
PagI	TCATGA	2 cut(s)	834, 918
PceI	AGGCCT	1 cut(s)	81
PciI	ACATGT	2 cut(s)	1786, 1941
PctI	GAATGC	5 cut(s)	885, 911, 1027, 1310, 1312
PdmI	GAANNNNTTC	2 cut(s)	1310, 1838
PfeI	GAWTC	6 cut(s)	687, 948, 1501, 1718, 1877, 2054
Pfl23II	CGTACG	2 cut(s)	140, 636
PkrI	GCNGC	2 cut(s)	397, 1992
PleI	GAGTC	2 cut(s)	308, 626
PpsI	GAGTC	2 cut(s)	308, 626
PpuMI	RGGWCCY	1 cut(s)	1601
PscI	ACATGT	2 cut(s)	1786, 1941
PsiI	TTATAA	1 cut(s)	1730
Psp5II	RGGWCCY	1 cut(s)	1601
Psp6I	CCWGG	1 cut(s)	324
PspEI	GGTNACC	1 cut(s)	145
PspGI	CCWGG	1 cut(s)	324
PspLI	CGTACG	2 cut(s)	140, 636
PspN4I	GGNNCC	5 cut(s)	156, 772, 780, 1602, 1931
PspPI	GGNCC	6 cut(s)	544, 563, 577, 596, 771, 1601
PspPPI	RGGWCCY	1 cut(s)	1601
PsuI	RGATCY	1 cut(s)	1684
RsaI	GTAC	8 cut(s)	142, 339, 638, 977, 1274, 1519, 1574, 1785
RsaNI	GTAC	8 cut(s)	141, 338, 637, 976, 1273, 1518, 1573, 1784
RseI	CAYNNNNRTG	3 cut(s)	188, 923, 1872
SaqAI	TTAA	6 cut(s)	27, 386, 477, 1791, 2037, 2092
SatI	GCNGC	2 cut(s)	396, 1991
Sau3AI	GATC	6 cut(s)	1246, 1587, 1684, 1713, 1809, 1823
Sau96I	GGNCC	6 cut(s)	544, 563, 577, 596, 771, 1601
SchI	GAGTC	2 cut(s)	309, 626
ScrFI	CCNGG	3 cut(s)	326, 1209, 1210
SduI	GDGCHC	4 cut(s)	831, 844, 1136, 1493
SfaNI	GCATC	5 cut(s)	858, 924, 1453, 1948, 1958
SfcI	CTRYAG	2 cut(s)	910, 2064
SinI	GGWCC	2 cut(s)	771, 1601
SmaI	CCCGGG	1 cut(s)	1210
SmiMI	CAYNNNNRTG	3 cut(s)	188, 923, 1872
Sse9I	AATT	9 cut(s)	411, 691, 968, 1320, 1436, 1676, 1834, 1848, 1963
SseBI	AGGCCT	1 cut(s)	81
SsiI	CCGC	7 cut(s)	297, 396, 599, 1317, 1539, 1612, 1636
SspI	AATATT	1 cut(s)	1471
SspMI	CTAG	2 cut(s)	17, 1925
StuI	AGGCCT	1 cut(s)	81
StyD4I	CCNGG	3 cut(s)	324, 1207, 1208
StyI	CCWWGG	4 cut(s)	150, 774, 844, 1495
TaaI	ACNGT	6 cut(s)	54, 145, 337, 718, 789, 1669
TaiI	ACGT	4 cut(s)	142, 219, 642, 1523
TaqI	TCGA	7 cut(s)	287, 810, 1177, 1716, 1826, 1842, 2086
TaqII	GACCGA	1 cut(s)	1527
TasI	AATT	9 cut(s)	411, 691, 968, 1320, 1436, 1676, 1834, 1848, 1963
TatI	WGTACW	2 cut(s)	975, 1572
TauI	GCSGC	1 cut(s)	398
TfiI	GAWTC	6 cut(s)	687, 948, 1501, 1718, 1877, 2054
Tru1I	TTAA	6 cut(s)	27, 386, 477, 1791, 2037, 2092
Tru9I	TTAA	6 cut(s)	27, 386, 477, 1791, 2037, 2092
TscAI	CASTG	7 cut(s)	195, 203, 682, 792, 1300, 1420, 1983
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	1 cut(s)	1990
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	9 cut(s)	368, 409, 493, 725, 810, 1319, 1748, 1879, 2046
TspGWI	ACGGA	3 cut(s)	915, 1154, 1476
TspMI	CCCGGG	1 cut(s)	1208
TspRI	CASTG	7 cut(s)	195, 203, 682, 792, 1300, 1420, 1983
VpaK11BI	GGWCC	2 cut(s)	771, 1601
XapI	RAATTY	3 cut(s)	968, 1676, 1834
XceI	RCATGY	4 cut(s)	1069, 1772, 1790, 1945
XcmI	CCANNNNNNNNNTGG	2 cut(s)	438, 505
XmaI	CCCGGG	1 cut(s)	1208
XmiI	GTMKAC	2 cut(s)	1509, 1773
XmnI	GAANNNNTTC	2 cut(s)	1310, 1838
XspI	CTAG	2 cut(s)	17, 1925
Zsp2I	ATGCAT	1 cut(s)	1312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.