Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0003614

Physical Location & Seq

Genomic Coordinates Reverse (-)

3803483 .. 3805888

Gene Structure 2406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g05590.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGCCCTTCCGCAGCAGTATGGTGGCTCTGCAGCTCACAACACTTCAAGTTGACAACAACTTTGGTGGGACTACAATTCCAAATTCGTATAGCAACATGTGTAAACTGTTCAAGTTGAGTTTGAGGAACTGCAACATACAATGGCCTATTCTTGATTTCAGAAACAAGTTTATCTCTTGCCAATTTTGTGTACCCACTTTTTATTCATCATGGTCAAGATGGGACACCTATCTGGGCAATGTTGGGATGTCTAGGCTTGGGTGGAGACGTGGACTTTTGGAAGTGGTCAATCAAGCAGATAAGATTCAGAAAGAAAACTCCACATCTGTTGCCAGCAATGCTCATGGGGAGAAGTATAGGAATCCAAGGCCTACAAATCTGAAGCCTTTTAGGTTTAGAACTGATGAAAGAGGGATGTTTAAGGAAGCAACTTTGGAGAAAAAAGCTCATGCACCACTGAAGGAGATCACATTAGTCATGAATCCAGGGGCAAAGTCAACAAGCAAACATCAGAATGTGATACAGGCAAAACATTGGAGCAGATGGTCATATTTAGAAGTGCAAACGAGGATGCAGTTCTTGGTGTTGCATGAAGTTGATGTGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

203

Amino Acids

23.49

Weight (kDa)

9.89

Isoelectric Point (pI)

33.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17000 AT4G17000 AT4G17000
fragaria_vesca	FvH4_2g02560 FvH4_2g02560 FvH4_2g02560 FvH4_2g02560 FvH4_2g02560
malus_domestica	MD05G1112300.v1.1 MD10G1114900.v1.1
prunus_persica	Prupe.8G156900_v2.0.a1 Prupe.8G157000_v2.0.a1
pyrus_communis	pycom02g05590 pycom05g07390 pycom05g10780 pycom07g10710 pycom12g10280 pycom16g18860
rosa_chinensis	RchiOBHm_Chr6g0246371 RchiOBHm_Chr6g0246451 RchiOBHm_Chr6g0246631 RchiOBHm_Chr6g0246641
rosa_laevigata	RLG00000000929 RLG00000015260
rosa_multiflora	Rmu_sc0001066.1_g000005 Rmu_sc0008965.1_g000002
rosa_roxburghii	Rroxscaffold_7G00214640
rosa_rugosa	Rorug05G0520500
rosa_samantha	Rh6AG034800 Rh6AG035100 Rh6BG029900 Rh6CG030300 Rh6DG029200
rosa_wichuraiana	Rw6G002820 Rw6G002980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	10
AcsI	RAATTY	1 cut(s)	82
AcuI	CTGAAG	2 cut(s)	401, 479
AfaI	GTAC	1 cut(s)	192
AflIII	ACRYGT	1 cut(s)	96
AgsI	TTSAA	2 cut(s)	47, 112
AjiI	CACGTC	1 cut(s)	269
AjnI	CCWGG	1 cut(s)	484
AluBI	AGCT	2 cut(s)	34, 446
AluI	AGCT	2 cut(s)	34, 446
Alw26I	GTCTC	1 cut(s)	259
AoxI	GGCC	2 cut(s)	143, 368
ApeKI	GCWGC	2 cut(s)	12, 31
ApoI	RAATTY	1 cut(s)	82
ArsI	GACNNNNNNTTYG	2 cut(s)	44, 76
BbvI	GCAGC	2 cut(s)	24, 43
BccI	CCATC	2 cut(s)	213, 537
BciT130I	CCWGG	1 cut(s)	486
BcoDI	GTCTC	1 cut(s)	259
BfaI	CTAG	1 cut(s)	252
BfmI	CTRYAG	1 cut(s)	29
BisI	GCNGC	2 cut(s)	13, 32
BlsI	GCNGC	2 cut(s)	14, 33
Bme1390I	CCNGG	1 cut(s)	486
BmgBI	CACGTC	1 cut(s)	269
BmrFI	CCNGG	1 cut(s)	486
BmsI	GCATC	1 cut(s)	561
BsaJI	CCNNGG	2 cut(s)	365, 485
Bse3DI	GCAATG	2 cut(s)	244, 343
BseBI	CCWGG	1 cut(s)	486
BseDI	CCNNGG	2 cut(s)	365, 485
BseGI	GGATG	3 cut(s)	252, 420, 576
BseMI	GCAATG	2 cut(s)	244, 343
BseXI	GCAGC	2 cut(s)	24, 43
BshFI	GGCC	2 cut(s)	145, 370
BslFI	GGGAC	2 cut(s)	82, 236
BsmAI	GTCTC	1 cut(s)	259
BsmBI	CGTCTC	1 cut(s)	259
BsmFI	GGGAC	2 cut(s)	82, 236
BsnI	GGCC	2 cut(s)	145, 370
Bsp143I	GATC	1 cut(s)	465
BspACI	CCGC	1 cut(s)	10
BspANI	GGCC	2 cut(s)	145, 370
BspHI	TCATGA	1 cut(s)	477
BspMAI	CTGCAG	1 cut(s)	33
BsrDI	GCAATG	2 cut(s)	244, 343
BssECI	CCNNGG	2 cut(s)	365, 485
BssMI	GATC	1 cut(s)	465
BssT1I	CCWWGG	1 cut(s)	365
Bst2UI	CCWGG	1 cut(s)	486
Bst4CI	ACNGT	1 cut(s)	108
BstC8I	GCNNGC	1 cut(s)	334
BstF5I	GGATG	3 cut(s)	252, 420, 576
BstKTI	GATC	1 cut(s)	468
BstMAI	GTCTC	1 cut(s)	259
BstMBI	GATC	1 cut(s)	465
BstMWI	GCNNNNNNNGC	1 cut(s)	338
BstNI	CCWGG	1 cut(s)	486
BstNSI	RCATGY	1 cut(s)	100
BstSCI	CCNGG	1 cut(s)	484
BstSFI	CTRYAG	1 cut(s)	29
BstV1I	GCAGC	2 cut(s)	24, 43
BsuRI	GGCC	2 cut(s)	145, 370
BtrI	CACGTC	1 cut(s)	269
BtsCI	GGATG	3 cut(s)	252, 420, 576
BtsIMutI	CAGTG	1 cut(s)	455
Cac8I	GCNNGC	1 cut(s)	334
CciI	TCATGA	1 cut(s)	477
Csp6I	GTAC	1 cut(s)	191
CspCI	CAANNNNNGTGG	4 cut(s)	46, 81, 310, 345
CviAII	CATG	6 cut(s)	97, 210, 344, 449, 478, 590
CviJI	RGCY	7 cut(s)	26, 34, 145, 256, 370, 385, 446
CviKI_1	RGCY	7 cut(s)	26, 34, 145, 256, 370, 385, 446
CviQI	GTAC	1 cut(s)	191
DpnI	GATC	1 cut(s)	467
DpnII	GATC	1 cut(s)	465
Eco130I	CCWWGG	1 cut(s)	365
Eco147I	AGGCCT	1 cut(s)	370
Eco57I	CTGAAG	2 cut(s)	401, 479
EcoRII	CCWGG	1 cut(s)	484
EcoT14I	CCWWGG	1 cut(s)	365
ErhI	CCWWGG	1 cut(s)	365
Esp3I	CGTCTC	1 cut(s)	259
FaeI	CATG	6 cut(s)	100, 213, 347, 452, 481, 593
FaqI	GGGAC	2 cut(s)	82, 236
FatI	CATG	6 cut(s)	96, 209, 343, 448, 477, 589
Fnu4HI	GCNGC	2 cut(s)	13, 32
FokI	GGATG	3 cut(s)	259, 427, 583
Fsp4HI	GCNGC	2 cut(s)	13, 32
FspBI	CTAG	1 cut(s)	252
GluI	GCNGC	2 cut(s)	13, 32
HaeIII	GGCC	2 cut(s)	145, 370
Hin1II	CATG	6 cut(s)	100, 213, 347, 452, 481, 593
HincII	GTYRAC	2 cut(s)	52, 498
HindII	GTYRAC	2 cut(s)	52, 498
HinfI	GANTC	3 cut(s)	304, 361, 481
Hpy166II	GTNNAC	5 cut(s)	52, 104, 191, 272, 498
Hpy188I	TCNGA	4 cut(s)	161, 309, 381, 513
Hpy188III	TCNNGA	3 cut(s)	152, 216, 478
Hpy8I	GTNNAC	5 cut(s)	52, 104, 191, 272, 498
HpyAV	CCTTC	2 cut(s)	16, 454
HpyCH4III	ACNGT	1 cut(s)	108
HpyCH4IV	ACGT	1 cut(s)	268
HpyCH4V	TGCA	7 cut(s)	31, 132, 452, 562, 574, 589, 604
HpyF10VI	GCNNNNNNNGC	1 cut(s)	338
HpySE526I	ACGT	1 cut(s)	268
Hsp92II	CATG	6 cut(s)	100, 213, 347, 452, 481, 593
Kzo9I	GATC	1 cut(s)	465
LmnI	GCTCC	1 cut(s)	537
LpnPI	CCDG	5 cut(s)	218, 346, 471, 498, 509
Lsp1109I	GCAGC	2 cut(s)	24, 43
LweI	GCATC	1 cut(s)	561
MaeI	CTAG	1 cut(s)	252
MaeII	ACGT	1 cut(s)	268
MalI	GATC	1 cut(s)	467
MboI	GATC	1 cut(s)	465
MluCI	AATT	3 cut(s)	75, 82, 182
MnlI	CCTC	3 cut(s)	117, 404, 561
MseI	TTAA	1 cut(s)	420
MslI	CAYNNNNRTG	1 cut(s)	513
MspR9I	CCNGG	1 cut(s)	486
MvaI	CCWGG	1 cut(s)	486
MwoI	GCNNNNNNNGC	1 cut(s)	338
NdeII	GATC	1 cut(s)	465
NlaIII	CATG	6 cut(s)	100, 213, 347, 452, 481, 593
NspI	RCATGY	1 cut(s)	100
PagI	TCATGA	1 cut(s)	477
PceI	AGGCCT	1 cut(s)	370
PciI	ACATGT	1 cut(s)	96
PfeI	GAWTC	3 cut(s)	304, 361, 481
PkrI	GCNGC	2 cut(s)	14, 33
PscI	ACATGT	1 cut(s)	96
Psp6I	CCWGG	1 cut(s)	484
PspGI	CCWGG	1 cut(s)	484
PstI	CTGCAG	1 cut(s)	33
RsaI	GTAC	1 cut(s)	192
RsaNI	GTAC	1 cut(s)	191
RseI	CAYNNNNRTG	1 cut(s)	513
SaqAI	TTAA	1 cut(s)	420
SatI	GCNGC	2 cut(s)	13, 32
Sau3AI	GATC	1 cut(s)	465
ScrFI	CCNGG	1 cut(s)	486
SetI	ASST	5 cut(s)	36, 230, 271, 395, 448
SfaNI	GCATC	1 cut(s)	561
SfcI	CTRYAG	1 cut(s)	29
SmiMI	CAYNNNNRTG	1 cut(s)	513
Sse9I	AATT	3 cut(s)	75, 82, 182
SseBI	AGGCCT	1 cut(s)	370
SsiI	CCGC	1 cut(s)	10
SspMI	CTAG	1 cut(s)	252
StuI	AGGCCT	1 cut(s)	370
StyD4I	CCNGG	1 cut(s)	484
StyI	CCWWGG	1 cut(s)	365
TaaI	ACNGT	1 cut(s)	108
TaiI	ACGT	1 cut(s)	271
TasI	AATT	3 cut(s)	75, 82, 182
TfiI	GAWTC	3 cut(s)	304, 361, 481
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TscAI	CASTG	1 cut(s)	462
TseI	GCWGC	2 cut(s)	12, 31
TspDTI	ATGAA	4 cut(s)	195, 420, 494, 606
TspRI	CASTG	1 cut(s)	462
XapI	RAATTY	1 cut(s)	82
XceI	RCATGY	1 cut(s)	100
XspI	CTAG	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.