Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003614

Physical Location & Seq

Genomic Coordinates Forward (+)

8117867 .. 8118520

Gene Structure 654 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000929

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGACCCACTTGTATCTCTCTCAAAATCAGCTTTCTGGTGCCATTCCTCCAGAAATGGGCAACCTATCCAATTTAGTTCTATTGTTCATGGATGACAACCATTTGACTGGTCCCATCCCACATTTGATCAGTTCCATCTCCAAACTCATCCATCTTAATCCATCTTATAATCTGATCAATGAGACAATCCCACCAGAAATTGGCCTTCTATCAAATCTTGAAACTCTGCACCTAGATGCAAATCAGTTCAGTGGCTCAATTCCCAAAGAAATAGGCCAACTCAAGTATCTTTACGAGCTTAGTCTGGGCATCAACAATCTAGAAGGGTCTATTCCGGCTTCTCTGGGTAATTTCACCAACATGACCTACTTGTGTCTCCATCAAAATCAGCTTTCTGGTGCCATTCCTCCAGAGATAGGAAATCTATCTAGTTTGATCCACCTGGTCATGTATGACAACCATTTGATAGGTCCCATCCCTCCAAGTTTTGGAAACTTGAAGAACTTAGTTTTACTATTCTTGCAATTGAATCAACTGTCTGGCCTTATTCCCTGTGAGATTAGGAATCTGAAATCCATTCAAATGTTGGATGTTGTCAACAATCATCTTTCTGGCCTCATTCCCAGTGACATAGGGAATATGAAATCCCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

218

Amino Acids

23.77

Weight (kDa)

5.45

Isoelectric Point (pI)

21.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	5 - 106	1.3e-06	Leucine-rich repeat region
LRR_14	PF23598	46 - 128	1e-06	Leucine-rich repeat region
LRR_14	PF23598	113 - 217	8.6e-10	Leucine-rich repeat region
LRR_8	PF13855	162 - 203	6.5e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17000 AT4G17000 AT4G17000
fragaria_vesca	FvH4_2g02560 FvH4_2g02560 FvH4_2g02560 FvH4_2g02560 FvH4_2g02560
malus_domestica	MD05G1112300.v1.1 MD10G1114900.v1.1
prunus_persica	Prupe.8G156900_v2.0.a1 Prupe.8G157000_v2.0.a1
pyrus_communis	pycom02g05590 pycom05g07390 pycom05g10780 pycom07g10710 pycom12g10280 pycom16g18860
rosa_chinensis	RchiOBHm_Chr6g0246371 RchiOBHm_Chr6g0246451 RchiOBHm_Chr6g0246631 RchiOBHm_Chr6g0246641
rosa_laevigata	RLG00000000929 RLG00000015260
rosa_multiflora	Rmu_sc0001066.1_g000005 Rmu_sc0008965.1_g000002
rosa_roxburghii	Rroxscaffold_7G00214640
rosa_rugosa	Rorug05G0520500
rosa_samantha	Rh6AG034800 Rh6AG035100 Rh6BG029900 Rh6CG030300 Rh6DG029200
rosa_wichuraiana	Rw6G002820 Rw6G002980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	168
AccB1I	GGYRCC	2 cut(s)	38, 398
AccB7I	CCANNNNNTGG	2 cut(s)	200, 488
AclWI	GGATC	1 cut(s)	430
AfiI	CCNNNNNNNGG	4 cut(s)	56, 200, 416, 488
AgsI	TTSAA	4 cut(s)	221, 499, 529, 581
AjnI	CCWGG	1 cut(s)	441
AluBI	AGCT	3 cut(s)	31, 298, 391
AluI	AGCT	3 cut(s)	31, 298, 391
Alw26I	GTCTC	2 cut(s)	176, 380
AlwI	GGATC	1 cut(s)	430
AoxI	GGCC	4 cut(s)	202, 274, 541, 613
AspS9I	GGNCC	2 cut(s)	110, 470
AsuHPI	GGTGA	1 cut(s)	346
AvaII	GGWCC	2 cut(s)	110, 470
BaeI	ACNNNNGTAYC	2 cut(s)	269, 302
BanI	GGYRCC	2 cut(s)	38, 398
BccI	CCATC	6 cut(s)	122, 143, 159, 169, 387, 482
BciT130I	CCWGG	1 cut(s)	443
BclI	TGATCA	2 cut(s)	126, 174
BcoDI	GTCTC	2 cut(s)	176, 380
BfaI	CTAG	3 cut(s)	233, 320, 429
Bme1390I	CCNGG	1 cut(s)	443
Bme18I	GGWCC	2 cut(s)	110, 470
BmgT120I	GGNCC	2 cut(s)	110, 470
BmiI	GGNNCC	4 cut(s)	40, 112, 400, 472
BmrFI	CCNGG	1 cut(s)	443
BmrI	ACTGGG	1 cut(s)	618
BmsI	GCATC	2 cut(s)	226, 318
BmuI	ACTGGG	1 cut(s)	618
BpmI	CTGGAG	2 cut(s)	33, 393
BpuEI	CTTGAG	1 cut(s)	266
BsaBI	GATNNNNATC	1 cut(s)	240
Bsc4I	CCNNNNNNNGG	4 cut(s)	56, 200, 416, 488
Bse1I	ACTGG	2 cut(s)	112, 624
Bse8I	GATNNNNATC	1 cut(s)	240
BseBI	CCWGG	1 cut(s)	443
BseGI	GGATG	5 cut(s)	97, 114, 147, 474, 595
BseJI	GATNNNNATC	1 cut(s)	240
BseLI	CCNNNNNNNGG	4 cut(s)	56, 200, 416, 488
BseNI	ACTGG	2 cut(s)	112, 624
BsgI	GTGCAG	1 cut(s)	212
BshFI	GGCC	4 cut(s)	204, 276, 543, 615
BshNI	GGYRCC	2 cut(s)	38, 398
BsiSI	CCGG	1 cut(s)	335
BslFI	GGGAC	2 cut(s)	96, 456
BslI	CCNNNNNNNGG	4 cut(s)	56, 200, 416, 488
BsmAI	GTCTC	2 cut(s)	176, 380
BsmFI	GGGAC	2 cut(s)	96, 456
BsnI	GGCC	4 cut(s)	204, 276, 543, 615
Bsp143I	GATC	3 cut(s)	126, 174, 435
BspANI	GGCC	4 cut(s)	204, 276, 543, 615
BspLI	GGNNCC	4 cut(s)	40, 112, 400, 472
BspPI	GGATC	1 cut(s)	430
BspT107I	GGYRCC	2 cut(s)	38, 398
BsrI	ACTGG	2 cut(s)	112, 624
BssMI	GATC	3 cut(s)	126, 174, 435
Bst2UI	CCWGG	1 cut(s)	443
Bst4CI	ACNGT	1 cut(s)	537
BstDEI	CTNAG	2 cut(s)	299, 505
BstF5I	GGATG	5 cut(s)	97, 114, 147, 474, 595
BstKTI	GATC	3 cut(s)	129, 177, 438
BstMAI	GTCTC	2 cut(s)	176, 380
BstMBI	GATC	3 cut(s)	126, 174, 435
BstNI	CCWGG	1 cut(s)	443
BstSCI	CCNGG	1 cut(s)	441
BstXI	CCANNNNNNTGG	1 cut(s)	107
BsuRI	GGCC	4 cut(s)	204, 276, 543, 615
BtsCI	GGATG	5 cut(s)	97, 114, 147, 474, 595
BtsIMutI	CAGTG	2 cut(s)	256, 631
Cfr13I	GGNCC	2 cut(s)	110, 470
CsiI	ACCWGGT	1 cut(s)	441
CviAII	CATG	3 cut(s)	88, 361, 448
CviJI	RGCY	9 cut(s)	31, 204, 255, 276, 298, 338, 391, 543, 615
CviKI_1	RGCY	9 cut(s)	31, 204, 255, 276, 298, 338, 391, 543, 615
DdeI	CTNAG	2 cut(s)	299, 505
DpnI	GATC	3 cut(s)	128, 176, 437
DpnII	GATC	3 cut(s)	126, 174, 435
Eco47I	GGWCC	2 cut(s)	110, 470
EcoO109I	RGGNCCY	1 cut(s)	470
EcoRII	CCWGG	1 cut(s)	441
FaeI	CATG	3 cut(s)	91, 364, 451
FaiI	YATR	7 cut(s)	89, 168, 362, 449, 453, 632, 641
FaqI	GGGAC	2 cut(s)	96, 456
FatI	CATG	3 cut(s)	87, 360, 447
FbaI	TGATCA	2 cut(s)	126, 174
FokI	GGATG	5 cut(s)	101, 104, 134, 461, 602
FspBI	CTAG	3 cut(s)	233, 320, 429
GsuI	CTGGAG	2 cut(s)	33, 393
HaeIII	GGCC	4 cut(s)	204, 276, 543, 615
HapII	CCGG	1 cut(s)	335
Hin1II	CATG	3 cut(s)	91, 364, 451
HincII	GTYRAC	1 cut(s)	598
HindII	GTYRAC	1 cut(s)	598
HinfI	GANTC	2 cut(s)	529, 565
HpaII	CCGG	1 cut(s)	335
HphI	GGTGA	1 cut(s)	346
Hpy166II	GTNNAC	1 cut(s)	598
Hpy188I	TCNGA	2 cut(s)	174, 570
Hpy188III	TCNNGA	4 cut(s)	50, 218, 320, 410
Hpy8I	GTNNAC	1 cut(s)	598
HpyAV	CCTTC	2 cut(s)	215, 317
HpyCH4III	ACNGT	1 cut(s)	537
HpyCH4V	TGCA	3 cut(s)	229, 239, 523
HpyF3I	CTNAG	2 cut(s)	299, 505
Hsp92II	CATG	3 cut(s)	91, 364, 451
Ksp22I	TGATCA	2 cut(s)	126, 174
Kzo9I	GATC	3 cut(s)	126, 174, 435
LweI	GCATC	2 cut(s)	226, 318
MabI	ACCWGGT	1 cut(s)	441
MaeI	CTAG	3 cut(s)	233, 320, 429
MaeIII	GTNAC	1 cut(s)	626
MalI	GATC	3 cut(s)	128, 176, 437
MboI	GATC	3 cut(s)	126, 174, 435
MboII	GAAGA	1 cut(s)	511
MfeI	CAATTG	1 cut(s)	524
MluCI	AATT	5 cut(s)	70, 198, 258, 349, 524
MmeI	TCCRAC	1 cut(s)	567
MnlI	CCTC	4 cut(s)	57, 417, 489, 626
MseI	TTAA	1 cut(s)	156
MslI	CAYNNNNRTG	3 cut(s)	234, 359, 581
MspI	CCGG	1 cut(s)	335
MspR9I	CCNGG	1 cut(s)	443
MunI	CAATTG	1 cut(s)	524
MvaI	CCWGG	1 cut(s)	443
NdeII	GATC	3 cut(s)	126, 174, 435
NlaIII	CATG	3 cut(s)	91, 364, 451
NlaIV	GGNNCC	4 cut(s)	40, 112, 400, 472
NmuCI	GTSAC	1 cut(s)	626
PfeI	GAWTC	2 cut(s)	529, 565
PflMI	CCANNNNNTGG	2 cut(s)	200, 488
PpuMI	RGGWCCY	1 cut(s)	470
PsiI	TTATAA	1 cut(s)	168
Psp5II	RGGWCCY	1 cut(s)	470
Psp6I	CCWGG	1 cut(s)	441
PspGI	CCWGG	1 cut(s)	441
PspN4I	GGNNCC	4 cut(s)	40, 112, 400, 472
PspPI	GGNCC	2 cut(s)	110, 470
PspPPI	RGGWCCY	1 cut(s)	470
RseI	CAYNNNNRTG	3 cut(s)	234, 359, 581
SaqAI	TTAA	1 cut(s)	156
Sau3AI	GATC	3 cut(s)	126, 174, 435
Sau96I	GGNCC	2 cut(s)	110, 470
ScrFI	CCNGG	1 cut(s)	443
SetI	ASST	8 cut(s)	33, 66, 234, 300, 368, 393, 444, 472
SexAI	ACCWGGT	1 cut(s)	441
SfaNI	GCATC	2 cut(s)	226, 318
SinI	GGWCC	2 cut(s)	110, 470
SmiMI	CAYNNNNRTG	3 cut(s)	234, 359, 581
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
Sse9I	AATT	5 cut(s)	70, 198, 258, 349, 524
SspMI	CTAG	3 cut(s)	233, 320, 429
StyD4I	CCNGG	1 cut(s)	441
TaaI	ACNGT	1 cut(s)	537
TasI	AATT	5 cut(s)	70, 198, 258, 349, 524
TfiI	GAWTC	2 cut(s)	529, 565
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	2 cut(s)	256, 631
TseFI	GTSAC	1 cut(s)	626
Tsp45I	GTSAC	1 cut(s)	626
TspDTI	ATGAA	1 cut(s)	76
TspRI	CASTG	2 cut(s)	256, 631
Van91I	CCANNNNNTGG	2 cut(s)	200, 488
VpaK11BI	GGWCC	2 cut(s)	110, 470
XbaI	TCTAGA	1 cut(s)	319
XcmI	CCANNNNNNNNNTGG	1 cut(s)	583
XspI	CTAG	3 cut(s)	233, 320, 429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.