Rh6AG035100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0003614
Physical Location & Seq
Reverse (-)
4454319 .. 4455823
1505 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG035100.1

Sequence Viewer

Length: 537 bp
ATGGAAGAAGAACCTCAGTCCGTGCAGACCAACGGCCAGGGAGGAGGCGGGGACGAGTTCTACGAGGAGATCGAGGCCCCCAAGTTCGTAGACTTCACCACACCAGATCACTTCTGCCCCGACGACCGTTATTGGTTCTGCATGCGCGTCGGGTGTGATCAGAAGCATGAAGAAGAATTAGACTCTGAAGCAATATTCAAGAACTTTGTTCTTAGGATAGTTGATGCCAAAGATAAGGCCAGACCTCTCCATACTAAGATCACTGCAACAACCCCAAATGTTAAGGCAAAGCAACCATCTTCTGTAGCCAAAGCTCTCACTACTCCAAGGAATAGAAAACCCATCTCGAATCCAGATACATTTCGAAGTGTTAGGAACTCCAAAGCCAAAAATGTTGTGGTGCCAAAGAATAGGGTCGTGGCCAAAGCTTTGGTCTTTACATACAAGTGCGGCACAGTTGACATCCTTGAAACAAGGAATAAAGATGGAATAGCTTTTAAATCAATAGCTTCAATTCCTGGTGGAAATCATAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

178

Amino Acids

19.87

Weight (kDa)

8.63

Isoelectric Point (pI)

37.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 400
AccI GTMKAC 1 cut(s) 90
AccII CGCG 1 cut(s) 147
AciI CCGC 2 cut(s) 48, 450
AcoI YGGCCR 2 cut(s) 34, 420
AcuI CTGAAG 1 cut(s) 207
AgsI TTSAA 3 cut(s) 199, 470, 513
AjnI CCWGG 2 cut(s) 36, 517
AluBI AGCT 5 cut(s) 314, 428, 494, 509, 534
AluI AGCT 5 cut(s) 314, 428, 494, 509, 534
AoxI GGCC 4 cut(s) 34, 75, 237, 420
ArsI GACNNNNNNTTYG 2 cut(s) 417, 449
AspLEI GCGC 1 cut(s) 147
AspS9I GGNCC 1 cut(s) 76
AsuHPI GGTGA 1 cut(s) 88
AsuII TTCGAA 1 cut(s) 364
BalI TGGCCA 1 cut(s) 422
BanI GGYRCC 1 cut(s) 400
BccI CCATC 3 cut(s) 304, 350, 479
BceAI ACGGC 1 cut(s) 49
BcgI CGANNNNNNTGC 2 cut(s) 130, 164
BciT130I CCWGG 2 cut(s) 38, 519
BclI TGATCA 1 cut(s) 157
BfmI CTRYAG 1 cut(s) 303
BisI GCNGC 1 cut(s) 451
BlsI GCNGC 1 cut(s) 452
Bme1390I CCNGG 2 cut(s) 38, 519
BmgT120I GGNCC 1 cut(s) 76
BmiI GGNNCC 2 cut(s) 78, 402
BmrFI CCNGG 2 cut(s) 38, 519
BmsI GCATC 1 cut(s) 214
Bpu14I TTCGAA 1 cut(s) 364
BsaJI CCNNGG 2 cut(s) 37, 326
BseBI CCWGG 2 cut(s) 38, 519
BseDI CCNNGG 2 cut(s) 37, 326
BseGI GGATG 1 cut(s) 462
BseMII CTCAG 1 cut(s) 29
BseRI GAGGAG 2 cut(s) 57, 80
BsgI GTGCAG 1 cut(s) 44
Bsh1236I CGCG 1 cut(s) 147
Bsh1285I CGRYCG 1 cut(s) 127
BshFI GGCC 4 cut(s) 36, 77, 239, 422
BshNI GGYRCC 1 cut(s) 400
BsiEI CGRYCG 1 cut(s) 127
BslFI GGGAC 1 cut(s) 65
BsmFI GGGAC 1 cut(s) 65
BsnI GGCC 4 cut(s) 36, 77, 239, 422
Bsp119I TTCGAA 1 cut(s) 364
Bsp143I GATC 4 cut(s) 69, 106, 157, 258
BspACI CCGC 2 cut(s) 48, 450
BspANI GGCC 4 cut(s) 36, 77, 239, 422
BspCNI CTCAG 1 cut(s) 28
BspFNI CGCG 1 cut(s) 147
BspLI GGNNCC 2 cut(s) 78, 402
BspT104I TTCGAA 1 cut(s) 364
BspT107I GGYRCC 1 cut(s) 400
BssECI CCNNGG 2 cut(s) 37, 326
BssMI GATC 4 cut(s) 69, 106, 157, 258
BssT1I CCWWGG 1 cut(s) 326
Bst2UI CCWGG 2 cut(s) 38, 519
Bst4CI ACNGT 2 cut(s) 128, 457
BstBI TTCGAA 1 cut(s) 364
BstC8I GCNNGC 1 cut(s) 143
BstDEI CTNAG 3 cut(s) 15, 212, 255
BstF5I GGATG 1 cut(s) 462
BstFNI CGCG 1 cut(s) 147
BstHHI GCGC 1 cut(s) 147
BstKTI GATC 4 cut(s) 72, 109, 160, 261
BstMBI GATC 4 cut(s) 69, 106, 157, 258
BstMCI CGRYCG 1 cut(s) 127
BstNI CCWGG 2 cut(s) 38, 519
BstNSI RCATGY 1 cut(s) 145
BstSCI CCNGG 2 cut(s) 36, 517
BstSFI CTRYAG 1 cut(s) 303
BstUI CGCG 1 cut(s) 147
BstXI CCANNNNNNTGG 1 cut(s) 430
BsuRI GGCC 4 cut(s) 36, 77, 239, 422
BtsCI GGATG 1 cut(s) 462
BtsI GCAGTG 1 cut(s) 261
BtsIMutI CAGTG 1 cut(s) 261
Cac8I GCNNGC 1 cut(s) 143
CfoI GCGC 1 cut(s) 147
Cfr13I GGNCC 1 cut(s) 76
CseI GACGC 1 cut(s) 136
CviAII CATG 2 cut(s) 142, 167
DdeI CTNAG 3 cut(s) 15, 212, 255
DpnI GATC 4 cut(s) 71, 108, 159, 260
DpnII GATC 4 cut(s) 69, 106, 157, 258
DraI TTTAAA 1 cut(s) 499
EaeI YGGCCR 2 cut(s) 34, 420
Eco130I CCWWGG 1 cut(s) 326
Eco57I CTGAAG 1 cut(s) 207
EcoO109I RGGNCCY 1 cut(s) 76
EcoRII CCWGG 2 cut(s) 36, 517
EcoT14I CCWWGG 1 cut(s) 326
ErhI CCWWGG 1 cut(s) 326
FaeI CATG 2 cut(s) 145, 170
FaiI YATR 5 cut(s) 143, 168, 252, 442, 531
FaqI GGGAC 1 cut(s) 65
FatI CATG 2 cut(s) 141, 166
FauI CCCGC 1 cut(s) 41
FbaI TGATCA 1 cut(s) 157
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 1 cut(s) 451
FokI GGATG 1 cut(s) 449
Fsp4HI GCNGC 1 cut(s) 451
GlaI GCGC 1 cut(s) 146
GluI GCNGC 1 cut(s) 451
HaeIII GGCC 4 cut(s) 36, 77, 239, 422
HgaI GACGC 1 cut(s) 136
HhaI GCGC 1 cut(s) 147
Hin1II CATG 2 cut(s) 145, 170
Hin6I GCGC 1 cut(s) 145
HinP1I GCGC 1 cut(s) 145
HincII GTYRAC 1 cut(s) 460
HindII GTYRAC 1 cut(s) 460
HindIII AAGCTT 1 cut(s) 426
HinfI GANTC 2 cut(s) 182, 349
HphI GGTGA 1 cut(s) 88
Hpy166II GTNNAC 2 cut(s) 91, 460
Hpy188I TCNGA 2 cut(s) 162, 187
Hpy188III TCNNGA 3 cut(s) 199, 346, 353
Hpy8I GTNNAC 2 cut(s) 91, 460
Hpy99I CGWCG 2 cut(s) 125, 152
HpyCH4III ACNGT 2 cut(s) 128, 457
HpyCH4V TGCA 3 cut(s) 25, 141, 266
HpyF3I CTNAG 3 cut(s) 15, 212, 255
Hsp92II CATG 2 cut(s) 145, 170
HspAI GCGC 1 cut(s) 145
Ksp22I TGATCA 1 cut(s) 157
Kzo9I GATC 4 cut(s) 69, 106, 157, 258
LpnPI CCDG 7 cut(s) 23, 50, 117, 253, 366, 504, 531
LweI GCATC 1 cut(s) 214
MalI GATC 4 cut(s) 71, 108, 159, 260
MboI GATC 4 cut(s) 69, 106, 157, 258
MboII GAAGA 5 cut(s) 17, 20, 182, 185, 291
MlsI TGGCCA 1 cut(s) 422
MluCI AATT 2 cut(s) 176, 513
MluNI TGGCCA 1 cut(s) 422
MlyI GAGTC 1 cut(s) 176
MnlI CCTC 6 cut(s) 24, 35, 38, 58, 67, 255
Mox20I TGGCCA 1 cut(s) 422
MscI TGGCCA 1 cut(s) 422
MseI TTAA 2 cut(s) 282, 498
MslI CAYNNNNRTG 1 cut(s) 445
Msp20I TGGCCA 1 cut(s) 422
MspR9I CCNGG 2 cut(s) 38, 519
MvaI CCWGG 2 cut(s) 38, 519
MvnI CGCG 1 cut(s) 147
NdeII GATC 4 cut(s) 69, 106, 157, 258
NlaIII CATG 2 cut(s) 145, 170
NlaIV GGNNCC 2 cut(s) 78, 402
NspI RCATGY 1 cut(s) 145
NspV TTCGAA 1 cut(s) 364
PaeI GCATGC 1 cut(s) 145
PcsI WCGNNNNNNNCGW 2 cut(s) 60, 69
PfeI GAWTC 1 cut(s) 349
PkrI GCNGC 1 cut(s) 452
PleI GAGTC 1 cut(s) 176
PpsI GAGTC 1 cut(s) 176
Psp6I CCWGG 2 cut(s) 36, 517
PspGI CCWGG 2 cut(s) 36, 517
PspN4I GGNNCC 2 cut(s) 78, 402
PspPI GGNCC 1 cut(s) 76
RseI CAYNNNNRTG 1 cut(s) 445
SaqAI TTAA 2 cut(s) 282, 498
SatI GCNGC 1 cut(s) 451
Sau3AI GATC 4 cut(s) 69, 106, 157, 258
Sau96I GGNCC 1 cut(s) 76
SchI GAGTC 1 cut(s) 176
ScrFI CCNGG 2 cut(s) 38, 519
SetI ASST 7 cut(s) 16, 247, 316, 430, 496, 511, 536
SfaNI GCATC 1 cut(s) 214
SfcI CTRYAG 1 cut(s) 303
SfuI TTCGAA 1 cut(s) 364
SmiMI CAYNNNNRTG 1 cut(s) 445
SphI GCATGC 1 cut(s) 145
Sse9I AATT 2 cut(s) 176, 513
SsiI CCGC 2 cut(s) 48, 450
SspI AATATT 1 cut(s) 195
StyD4I CCNGG 2 cut(s) 36, 517
StyI CCWWGG 1 cut(s) 326
TaaI ACNGT 2 cut(s) 128, 457
TaqI TCGA 3 cut(s) 72, 347, 364
TasI AATT 2 cut(s) 176, 513
TauI GCSGC 1 cut(s) 453
TfiI GAWTC 1 cut(s) 349
Tru1I TTAA 2 cut(s) 282, 498
Tru9I TTAA 2 cut(s) 282, 498
TscAI CASTG 1 cut(s) 268
TspDTI ATGAA 1 cut(s) 183
TspGWI ACGGA 1 cut(s) 10
TspRI CASTG 1 cut(s) 268
XceI RCATGY 1 cut(s) 145
XcmI CCANNNNNNNNNTGG 1 cut(s) 394
XmiI GTMKAC 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.