Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003614

Physical Location & Seq

Genomic Coordinates Reverse (-)

2272171 .. 2272996

Gene Structure 826 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22109

Sequence Viewer

CDS Protein Promoter (2k)

Length: 171 bp

ATGGAAGAAGAACCTCAGCCTGTTCAGACCAACGGCCAGGGAGGAGGCGGGGACGAGTTCTACGAGGAGATCGAGGCCCCCAAGTTCGTAGACTTCACCACACCGGATCACTTCTGTCCCGACGACCGTTATTGGTTCTGCATGCGCGTCGGGTGTGATCAAAAGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

56

Amino Acids

6.52

Weight (kDa)

4.22

Isoelectric Point (pI)

58.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17000 AT4G17000 AT4G17000
fragaria_vesca	FvH4_2g02560 FvH4_2g02560 FvH4_2g02560 FvH4_2g02560 FvH4_2g02560
malus_domestica	MD05G1112300.v1.1 MD10G1114900.v1.1
prunus_persica	Prupe.8G156900_v2.0.a1 Prupe.8G157000_v2.0.a1
pyrus_communis	pycom02g05590 pycom05g07390 pycom05g10780 pycom07g10710 pycom12g10280 pycom16g18860
rosa_chinensis	RchiOBHm_Chr6g0246371 RchiOBHm_Chr6g0246451 RchiOBHm_Chr6g0246631 RchiOBHm_Chr6g0246641
rosa_laevigata	RLG00000000929 RLG00000015260
rosa_multiflora	Rmu_sc0001066.1_g000005 Rmu_sc0008965.1_g000002
rosa_roxburghii	Rroxscaffold_7G00214640
rosa_rugosa	Rorug05G0520500
rosa_samantha	Rh6AG034800 Rh6AG035100 Rh6BG029900 Rh6CG030300 Rh6DG029200
rosa_wichuraiana	Rw6G002820 Rw6G002980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	90
AccII	CGCG	1 cut(s)	147
AciI	CCGC	1 cut(s)	48
AclWI	GGATC	1 cut(s)	114
AcoI	YGGCCR	1 cut(s)	34
AjnI	CCWGG	1 cut(s)	36
AlwI	GGATC	1 cut(s)	114
AoxI	GGCC	2 cut(s)	34, 75
AspLEI	GCGC	1 cut(s)	147
AspS9I	GGNCC	1 cut(s)	76
AsuHPI	GGTGA	1 cut(s)	88
BbvCI	CCTCAGC	1 cut(s)	15
BceAI	ACGGC	1 cut(s)	49
BcgI	CGANNNNNNTGC	2 cut(s)	130, 164
BciT130I	CCWGG	1 cut(s)	38
BclI	TGATCA	1 cut(s)	157
Bme1390I	CCNGG	1 cut(s)	38
BmgT120I	GGNCC	1 cut(s)	76
BmiI	GGNNCC	1 cut(s)	78
BmrFI	CCNGG	1 cut(s)	38
Bpu10I	CCTNAGC	1 cut(s)	15
BsaJI	CCNNGG	1 cut(s)	37
BsaWI	WCCGGW	1 cut(s)	103
BseBI	CCWGG	1 cut(s)	38
BseDI	CCNNGG	1 cut(s)	37
BseMII	CTCAG	1 cut(s)	29
BseRI	GAGGAG	2 cut(s)	57, 80
Bsh1236I	CGCG	1 cut(s)	147
Bsh1285I	CGRYCG	1 cut(s)	127
BshFI	GGCC	2 cut(s)	36, 77
BsiEI	CGRYCG	1 cut(s)	127
BsiSI	CCGG	1 cut(s)	104
BslFI	GGGAC	2 cut(s)	65, 102
BsmFI	GGGAC	2 cut(s)	65, 102
BsnI	GGCC	2 cut(s)	36, 77
Bsp143I	GATC	3 cut(s)	69, 106, 157
BspACI	CCGC	1 cut(s)	48
BspANI	GGCC	2 cut(s)	36, 77
BspCNI	CTCAG	1 cut(s)	28
BspFNI	CGCG	1 cut(s)	147
BspLI	GGNNCC	1 cut(s)	78
BspPI	GGATC	1 cut(s)	114
BssECI	CCNNGG	1 cut(s)	37
BssMI	GATC	3 cut(s)	69, 106, 157
Bst2UI	CCWGG	1 cut(s)	38
Bst4CI	ACNGT	1 cut(s)	128
BstC8I	GCNNGC	1 cut(s)	143
BstDEI	CTNAG	1 cut(s)	15
BstFNI	CGCG	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	147
BstKTI	GATC	3 cut(s)	72, 109, 160
BstMBI	GATC	3 cut(s)	69, 106, 157
BstMCI	CGRYCG	1 cut(s)	127
BstNI	CCWGG	1 cut(s)	38
BstNSI	RCATGY	1 cut(s)	145
BstSCI	CCNGG	1 cut(s)	36
BstUI	CGCG	1 cut(s)	147
BsuRI	GGCC	2 cut(s)	36, 77
Cac8I	GCNNGC	1 cut(s)	143
CfoI	GCGC	1 cut(s)	147
Cfr13I	GGNCC	1 cut(s)	76
CseI	GACGC	1 cut(s)	136
CviAII	CATG	1 cut(s)	142
CviJI	RGCY	3 cut(s)	19, 36, 77
CviKI_1	RGCY	3 cut(s)	19, 36, 77
DdeI	CTNAG	1 cut(s)	15
DpnI	GATC	3 cut(s)	71, 108, 159
DpnII	GATC	3 cut(s)	69, 106, 157
EaeI	YGGCCR	1 cut(s)	34
EcoO109I	RGGNCCY	1 cut(s)	76
EcoRII	CCWGG	1 cut(s)	36
FaeI	CATG	1 cut(s)	145
FaiI	YATR	1 cut(s)	143
FaqI	GGGAC	2 cut(s)	65, 102
FatI	CATG	1 cut(s)	141
FauI	CCCGC	1 cut(s)	41
FbaI	TGATCA	1 cut(s)	157
FblI	GTMKAC	1 cut(s)	90
GlaI	GCGC	1 cut(s)	146
HaeIII	GGCC	2 cut(s)	36, 77
HapII	CCGG	1 cut(s)	104
HgaI	GACGC	1 cut(s)	136
HhaI	GCGC	1 cut(s)	147
Hin1II	CATG	1 cut(s)	145
Hin6I	GCGC	1 cut(s)	145
HinP1I	GCGC	1 cut(s)	145
HpaII	CCGG	1 cut(s)	104
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	1 cut(s)	27
Hpy188III	TCNNGA	1 cut(s)	119
Hpy8I	GTNNAC	1 cut(s)	91
Hpy99I	CGWCG	2 cut(s)	125, 152
HpyCH4III	ACNGT	1 cut(s)	128
HpyCH4V	TGCA	1 cut(s)	141
HpyF3I	CTNAG	1 cut(s)	15
Hsp92II	CATG	1 cut(s)	145
HspAI	GCGC	1 cut(s)	145
Ksp22I	TGATCA	1 cut(s)	157
Kzo9I	GATC	3 cut(s)	69, 106, 157
LpnPI	CCDG	4 cut(s)	23, 33, 50, 117
MalI	GATC	3 cut(s)	71, 108, 159
MboI	GATC	3 cut(s)	69, 106, 157
MboII	GAAGA	2 cut(s)	17, 20
MnlI	CCTC	5 cut(s)	24, 35, 38, 58, 67
MseI	TTAA	1 cut(s)	169
MspI	CCGG	1 cut(s)	104
MspR9I	CCNGG	1 cut(s)	38
MvaI	CCWGG	1 cut(s)	38
MvnI	CGCG	1 cut(s)	147
NdeII	GATC	3 cut(s)	69, 106, 157
NlaIII	CATG	1 cut(s)	145
NlaIV	GGNNCC	1 cut(s)	78
NspI	RCATGY	1 cut(s)	145
PaeI	GCATGC	1 cut(s)	145
PcsI	WCGNNNNNNNCGW	2 cut(s)	60, 69
Psp6I	CCWGG	1 cut(s)	36
PspGI	CCWGG	1 cut(s)	36
PspN4I	GGNNCC	1 cut(s)	78
PspPI	GGNCC	1 cut(s)	76
SaqAI	TTAA	1 cut(s)	169
Sau3AI	GATC	3 cut(s)	69, 106, 157
Sau96I	GGNCC	1 cut(s)	76
ScrFI	CCNGG	1 cut(s)	38
SetI	ASST	1 cut(s)	16
SphI	GCATGC	1 cut(s)	145
SsiI	CCGC	1 cut(s)	48
StyD4I	CCNGG	1 cut(s)	36
TaaI	ACNGT	1 cut(s)	128
TaqI	TCGA	1 cut(s)	72
Tru1I	TTAA	1 cut(s)	169
Tru9I	TTAA	1 cut(s)	169
XceI	RCATGY	1 cut(s)	145
XmiI	GTMKAC	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.