Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003614

Physical Location & Seq

Genomic Coordinates Forward (+)

14240626 .. 14242929

Gene Structure 2304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g10780.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1410 bp

ATGGGCTTGGGCCTCATACACAGTTGTGTCAAAACTGGCAAACCCGTTAAAAGATCCGATAGGTGCAACCGTACGCTCCTCTCTCGCTCTCTCCCTTGCTTCGCGGAAATGGAAGAAGAAACTCAGAGCGTGCAGATCGACGGCGTCCACGAAGGTGGGGACGAGTTTTACGAGAAGATTGAGGCGCCCAAGTTCGTTGATTTCACCGAACCCGACCCATACCGGCCCGACGACCGTTACTGGTTCTGCATGCGAGTCGGATGTGATCAGAAGCATGAAGAAGAACTAGATTCAGAAGCGATTTACAAGAACTTCGTTCTTCGGGTTATGGCAGCAAGAAGTCCTAATGTGAAACTTAGAAAAGCACTGGCCAGAAAAGCACCAAGTTTGAAATGCCCACTGACAGCTCCCGCAAAATCTTCCAAGCCTAGAGTATCAAGACTGGCCCTGATTTCTTCCTTCTCTCGTAAGATGGTCAATGCCGAAGATAAATCCAGAAAACCTCTTCATAAGATCTGTGCAACACCAAATGTTAAGGCAAAACAACCGTCTGCTGTGTCCAAGGCTCTCACTACTCCAAGGAATCGGAAGCAGGTGTCAAATCCAGATACATTTCGAAGTGTTAGGAACCCCAAACCAAAGAATGTTGTGGTGCCAAAGAATAGGGTGGTAGCCAAAGCTCTGGTCTTTCACTCTCCGAAGAAGCCTGTGAGAACCAAGGCTTCAACGGAGTGGGGTACTCCTATGGGAAAAATTTGTTCAGCCATGAAGAAACTTGAGATCACTAGCGGGAAGAAACATGTTTTGGAGTGTAACAAGCCATTGCCTTTAGATACTTCAAGAAAACAATTTAGAGGGCGAGAGGTCAAAAGCCGGGTTTTCAATTCTTTGCATTCTAATAATTGCAAGGGCCAGGAAGTTAAATCCATGAAAAGAAAAAACATGGAAAAAGGCTTGAAACAGTGTTGTGATCCTGTGCCTCGTGAAGAGGTTGATGACAATGATTCCAGTGACATGGAAATTGATGAAAAATCAAGGAAAGGTACACTGGAAGGGTTCTCCATATCAGGCACTTGTAAGAGTGGTAGACTGAATGGTAAGAATCAAGTTGAAATCCTATCCGAGACATCGAAAGGCGATACTACCTCATTGTCAAGTTCTGAAGAGAGGGATTCGGAAGAGAATTACAATAAGGAAAGCGCCAATGATGGAAACGGTCATCAAGAGAAAACGAAGTTAAGATCAGAGAAGAGGAACACCCTTGAACATGTGGACGACGATGATGATAAAGAAAATGCTTTGGCCTCTGACAGCAAAGCGAATGACAATGAGGTCTTGGAGAGTGATGATAAAGAAAATAATACCGCTTCTGGTTATAACAGGTGTGGTTTACTTTTCATTTTTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

470

Amino Acids

52.67

Weight (kDa)

9.21

Isoelectric Point (pI)

42.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17000 AT4G17000 AT4G17000
fragaria_vesca	FvH4_2g02560 FvH4_2g02560 FvH4_2g02560 FvH4_2g02560 FvH4_2g02560
malus_domestica	MD05G1112300.v1.1 MD10G1114900.v1.1
prunus_persica	Prupe.8G156900_v2.0.a1 Prupe.8G157000_v2.0.a1
pyrus_communis	pycom02g05590 pycom05g07390 pycom05g10780 pycom07g10710 pycom12g10280 pycom16g18860
rosa_chinensis	RchiOBHm_Chr6g0246371 RchiOBHm_Chr6g0246451 RchiOBHm_Chr6g0246631 RchiOBHm_Chr6g0246641
rosa_laevigata	RLG00000000929 RLG00000015260
rosa_multiflora	Rmu_sc0001066.1_g000005 Rmu_sc0008965.1_g000002
rosa_roxburghii	Rroxscaffold_7G00214640
rosa_rugosa	Rorug05G0520500
rosa_samantha	Rh6AG034800 Rh6AG035100 Rh6BG029900 Rh6CG030300 Rh6DG029200
rosa_wichuraiana	Rw6G002820 Rw6G002980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1377
AarI	CACCTGC	1 cut(s)	583
AasI	GACNNNNNNGTC	1 cut(s)	1331
Acc36I	ACCTGC	1 cut(s)	583
AccB1I	GGYRCC	2 cut(s)	184, 652
AccI	GTMKAC	1 cut(s)	1087
AccII	CGCG	1 cut(s)	104
AciI	CCGC	4 cut(s)	104, 411, 789, 1365
AclWI	GGATC	2 cut(s)	48, 965
AcoI	YGGCCR	1 cut(s)	369
AcsI	RAATTY	1 cut(s)	753
AcuI	CTGAAG	1 cut(s)	1182
AcyI	GRCGYC	2 cut(s)	144, 185
AfaI	GTAC	3 cut(s)	73, 739, 1045
AflIII	ACRYGT	2 cut(s)	799, 1267
AgsI	TTSAA	7 cut(s)	391, 726, 840, 883, 958, 1112, 1265
AjnI	CCWGG	1 cut(s)	912
AjuI	GAANNNNNNNTTGG	2 cut(s)	788, 820
AleI	CACNNNNGTG	2 cut(s)	24, 153
AluBI	AGCT	2 cut(s)	407, 680
AluI	AGCT	2 cut(s)	407, 680
Alw26I	GTCTC	1 cut(s)	1118
AlwI	GGATC	2 cut(s)	48, 965
AoxI	GGCC	6 cut(s)	10, 224, 369, 444, 910, 1302
ApeKI	GCWGC	1 cut(s)	332
ApoI	RAATTY	1 cut(s)	753
ArsI	GACNNNNNNTTYG	4 cut(s)	533, 565, 669, 701
AspLEI	GCGC	2 cut(s)	187, 1202
AspS9I	GGNCC	4 cut(s)	10, 225, 445, 910
AsuC2I	CCSGG	1 cut(s)	875
AsuHPI	GGTGA	1 cut(s)	196
AsuII	TTCGAA	1 cut(s)	616
BalI	TGGCCA	1 cut(s)	371
BanI	GGYRCC	2 cut(s)	184, 652
BauI	CACGAG	1 cut(s)	981
BbvI	GCAGC	1 cut(s)	344
BccI	CCATC	2 cut(s)	466, 1202
BceAI	ACGGC	1 cut(s)	157
BcgI	CGANNNNNNTGC	2 cut(s)	238, 272
BciT130I	CCWGG	1 cut(s)	914
BclI	TGATCA	1 cut(s)	265
BcnI	CCSGG	1 cut(s)	875
BcoDI	GTCTC	1 cut(s)	1118
BfaI	CTAG	3 cut(s)	287, 429, 786
BfoI	RGCGCY	2 cut(s)	188, 1203
BfuAI	ACCTGC	1 cut(s)	583
BglII	AGATCT	1 cut(s)	513
BisI	GCNGC	1 cut(s)	333
BlsI	GCNGC	1 cut(s)	334
Bme1390I	CCNGG	2 cut(s)	875, 914
BmgT120I	GGNCC	4 cut(s)	10, 225, 445, 910
BmiI	GGNNCC	3 cut(s)	186, 629, 654
BmrFI	CCNGG	2 cut(s)	875, 914
Bpu14I	TTCGAA	1 cut(s)	616
BpuEI	CTTGAG	1 cut(s)	797
BpuMI	CCSGG	1 cut(s)	875
BsaHI	GRCGYC	2 cut(s)	144, 185
BsaJI	CCNNGG	3 cut(s)	561, 578, 717
Bse118I	RCCGGY	1 cut(s)	222
Bse1I	ACTGG	6 cut(s)	40, 245, 372, 447, 1008, 1053
Bse3DI	GCAATG	1 cut(s)	821
BseBI	CCWGG	1 cut(s)	914
BseDI	CCNNGG	3 cut(s)	561, 578, 717
BseGI	GGATG	1 cut(s)	266
BseMI	GCAATG	1 cut(s)	821
BseMII	CTCAG	1 cut(s)	137
BseNI	ACTGG	6 cut(s)	40, 245, 372, 447, 1008, 1053
BseRI	GAGGAG	1 cut(s)	68
BseXI	GCAGC	1 cut(s)	344
BsgI	GTGCAG	1 cut(s)	152
Bsh1236I	CGCG	1 cut(s)	104
Bsh1285I	CGRYCG	1 cut(s)	235
BshFI	GGCC	6 cut(s)	12, 226, 371, 446, 912, 1304
BshNI	GGYRCC	2 cut(s)	184, 652
BsiEI	CGRYCG	1 cut(s)	235
BsiSI	CCGG	2 cut(s)	223, 874
BsiWI	CGTACG	1 cut(s)	71
BslFI	GGGAC	1 cut(s)	173
BsmAI	GTCTC	1 cut(s)	1118
BsmFI	GGGAC	1 cut(s)	173
BsmI	GAATGC	1 cut(s)	892
BsnI	GGCC	6 cut(s)	12, 226, 371, 446, 912, 1304
Bsp119I	TTCGAA	1 cut(s)	616
Bsp143I	GATC	7 cut(s)	53, 135, 265, 513, 780, 970, 1241
BspACI	CCGC	4 cut(s)	104, 411, 789, 1365
BspANI	GGCC	6 cut(s)	12, 226, 371, 446, 912, 1304
BspCNI	CTCAG	1 cut(s)	136
BspFNI	CGCG	1 cut(s)	104
BspLI	GGNNCC	3 cut(s)	186, 629, 654
BspMI	ACCTGC	1 cut(s)	583
BspPI	GGATC	2 cut(s)	48, 965
BspT104I	TTCGAA	1 cut(s)	616
BspT107I	GGYRCC	2 cut(s)	184, 652
BsrDI	GCAATG	1 cut(s)	821
BsrFI	RCCGGY	1 cut(s)	222
BsrI	ACTGG	6 cut(s)	40, 245, 372, 447, 1008, 1053
BssAI	RCCGGY	1 cut(s)	222
BssECI	CCNNGG	3 cut(s)	561, 578, 717
BssMI	GATC	7 cut(s)	53, 135, 265, 513, 780, 970, 1241
BssNI	GRCGYC	2 cut(s)	144, 185
BssSI	CACGAG	1 cut(s)	981
BssT1I	CCWWGG	3 cut(s)	561, 578, 717
Bst2BI	CACGAG	1 cut(s)	981
Bst2UI	CCWGG	1 cut(s)	914
Bst4CI	ACNGT	6 cut(s)	23, 71, 236, 549, 963, 1217
Bst6I	CTCTTC	5 cut(s)	510, 981, 1158, 1173, 1244
BstACI	GRCGYC	2 cut(s)	144, 185
BstBI	TTCGAA	1 cut(s)	616
BstC8I	GCNNGC	2 cut(s)	131, 251
BstDEI	CTNAG	2 cut(s)	123, 356
BstF5I	GGATG	1 cut(s)	266
BstFNI	CGCG	1 cut(s)	104
BstH2I	RGCGCY	2 cut(s)	188, 1203
BstHHI	GCGC	2 cut(s)	187, 1202
BstKTI	GATC	7 cut(s)	56, 138, 268, 516, 783, 973, 1244
BstMAI	GTCTC	1 cut(s)	1118
BstMBI	GATC	7 cut(s)	53, 135, 265, 513, 780, 970, 1241
BstMCI	CGRYCG	1 cut(s)	235
BstMWI	GCNNNNNNNGC	1 cut(s)	377
BstNI	CCWGG	1 cut(s)	914
BstNSI	RCATGY	3 cut(s)	253, 803, 1271
BstSCI	CCNGG	2 cut(s)	873, 912
BstUI	CGCG	1 cut(s)	104
BstV1I	GCAGC	1 cut(s)	344
BstX2I	RGATCY	2 cut(s)	53, 513
BstXI	CCANNNNNNTGG	3 cut(s)	155, 682, 1015
BstYI	RGATCY	2 cut(s)	53, 513
BsuRI	GGCC	6 cut(s)	12, 226, 371, 446, 912, 1304
BtsCI	GGATG	1 cut(s)	266
BtsIMutI	CAGTG	5 cut(s)	365, 398, 968, 1015, 1046
BveI	ACCTGC	1 cut(s)	583
Cac8I	GCNNGC	2 cut(s)	131, 251
CfoI	GCGC	2 cut(s)	187, 1202
Cfr10I	RCCGGY	1 cut(s)	222
Cfr13I	GGNCC	4 cut(s)	10, 225, 445, 910
CseI	GACGC	1 cut(s)	133
Csp6I	GTAC	3 cut(s)	72, 738, 1044
CviAII	CATG	8 cut(s)	250, 275, 766, 800, 928, 943, 1015, 1268
CviQI	GTAC	3 cut(s)	72, 738, 1044
DdeI	CTNAG	2 cut(s)	123, 356
DinI	GGCGCC	1 cut(s)	186
DpnI	GATC	7 cut(s)	55, 137, 267, 515, 782, 972, 1243
DpnII	GATC	7 cut(s)	53, 135, 265, 513, 780, 970, 1241
DrdI	GACNNNNNNGTC	1 cut(s)	1331
DseDI	GACNNNNNNGTC	1 cut(s)	1331
EaeI	YGGCCR	1 cut(s)	369
Eam1104I	CTCTTC	5 cut(s)	510, 981, 1158, 1173, 1244
EarI	CTCTTC	5 cut(s)	510, 981, 1158, 1173, 1244
Eco130I	CCWWGG	3 cut(s)	561, 578, 717
Eco57I	CTGAAG	1 cut(s)	1182
EcoRII	CCWGG	1 cut(s)	912
EcoT14I	CCWWGG	3 cut(s)	561, 578, 717
EgeI	GGCGCC	1 cut(s)	186
EheI	GGCGCC	1 cut(s)	186
ErhI	CCWWGG	3 cut(s)	561, 578, 717
FaeI	CATG	8 cut(s)	253, 278, 769, 803, 931, 946, 1018, 1271
FaqI	GGGAC	1 cut(s)	173
FatI	CATG	8 cut(s)	249, 274, 765, 799, 927, 942, 1014, 1267
FauI	CCCGC	2 cut(s)	418, 782
FbaI	TGATCA	1 cut(s)	265
FblI	GTMKAC	1 cut(s)	1087
Fnu4HI	GCNGC	1 cut(s)	333
FokI	GGATG	1 cut(s)	273
Fsp4HI	GCNGC	1 cut(s)	333
FspBI	CTAG	3 cut(s)	287, 429, 786
GlaI	GCGC	2 cut(s)	186, 1201
GluI	GCNGC	1 cut(s)	333
HaeII	RGCGCY	2 cut(s)	188, 1203
HaeIII	GGCC	6 cut(s)	12, 226, 371, 446, 912, 1304
HapII	CCGG	2 cut(s)	223, 874
HgaI	GACGC	1 cut(s)	133
HhaI	GCGC	2 cut(s)	187, 1202
Hin1I	GRCGYC	2 cut(s)	144, 185
Hin1II	CATG	8 cut(s)	253, 278, 769, 803, 931, 946, 1018, 1271
Hin6I	GCGC	2 cut(s)	185, 1200
HinP1I	GCGC	2 cut(s)	185, 1200
HinfI	GANTC	6 cut(s)	255, 290, 583, 1004, 1102, 1172
HpaII	CCGG	2 cut(s)	223, 874
HphI	GGTGA	1 cut(s)	196
Hpy166II	GTNNAC	5 cut(s)	148, 1046, 1088, 1273, 1391
Hpy188III	TCNNGA	6 cut(s)	438, 495, 605, 840, 983, 1223
Hpy8I	GTNNAC	5 cut(s)	148, 1046, 1088, 1273, 1391
Hpy99I	CGWCG	3 cut(s)	143, 233, 1280
HpyAV	CCTTC	3 cut(s)	146, 469, 1046
HpyCH4III	ACNGT	6 cut(s)	23, 71, 236, 549, 963, 1217
HpyCH4V	TGCA	6 cut(s)	66, 133, 249, 521, 892, 906
HpyF10VI	GCNNNNNNNGC	1 cut(s)	377
HpyF3I	CTNAG	2 cut(s)	123, 356
Hsp92I	GRCGYC	2 cut(s)	144, 185
Hsp92II	CATG	8 cut(s)	253, 278, 769, 803, 931, 946, 1018, 1271
HspAI	GCGC	2 cut(s)	185, 1200
KasI	GGCGCC	1 cut(s)	184
Ksp22I	TGATCA	1 cut(s)	265
Kzo9I	GATC	7 cut(s)	53, 135, 265, 513, 780, 970, 1241
LmnI	GCTCC	2 cut(s)	81, 412
Lsp1109I	GCAGC	1 cut(s)	344
MaeI	CTAG	3 cut(s)	287, 429, 786
MaeIII	GTNAC	3 cut(s)	236, 812, 1010
MalI	GATC	7 cut(s)	55, 137, 267, 515, 782, 972, 1243
MboI	GATC	7 cut(s)	53, 135, 265, 513, 780, 970, 1241
MflI	RGATCY	2 cut(s)	53, 513
MlsI	TGGCCA	1 cut(s)	371
MluCI	AATT	6 cut(s)	753, 848, 883, 901, 1020, 1183
MluNI	TGGCCA	1 cut(s)	371
Mly113I	GGCGCC	1 cut(s)	185
MlyI	GAGTC	1 cut(s)	264
MmeI	TCCRAC	1 cut(s)	238
Mox20I	TGGCCA	1 cut(s)	371
MscI	TGGCCA	1 cut(s)	371
MseI	TTAA	4 cut(s)	48, 534, 921, 1238
MslI	CAYNNNNRTG	2 cut(s)	24, 153
Msp20I	TGGCCA	1 cut(s)	371
MspI	CCGG	2 cut(s)	223, 874
MspR9I	CCNGG	2 cut(s)	875, 914
Mva1269I	GAATGC	1 cut(s)	892
MvaI	CCWGG	1 cut(s)	914
MvnI	CGCG	1 cut(s)	104
MwoI	GCNNNNNNNGC	1 cut(s)	377
NarI	GGCGCC	1 cut(s)	185
NciI	CCSGG	1 cut(s)	875
NdeII	GATC	7 cut(s)	53, 135, 265, 513, 780, 970, 1241
NlaIII	CATG	8 cut(s)	253, 278, 769, 803, 931, 946, 1018, 1271
NlaIV	GGNNCC	3 cut(s)	186, 629, 654
NmuCI	GTSAC	1 cut(s)	1010
NspI	RCATGY	3 cut(s)	253, 803, 1271
NspV	TTCGAA	1 cut(s)	616
OliI	CACNNNNGTG	2 cut(s)	24, 153
PaeI	GCATGC	1 cut(s)	253
PaqCI	CACCTGC	1 cut(s)	583
PciI	ACATGT	2 cut(s)	799, 1267
PcsI	WCGNNNNNNNCGW	2 cut(s)	147, 168
PctI	GAATGC	1 cut(s)	892
PfeI	GAWTC	5 cut(s)	290, 583, 1004, 1102, 1172
Pfl23II	CGTACG	1 cut(s)	71
PflFI	GACNNNGTC	1 cut(s)	143
PkrI	GCNGC	1 cut(s)	334
PleI	GAGTC	1 cut(s)	263
PluTI	GGCGCC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	263
PscI	ACATGT	2 cut(s)	799, 1267
PsiI	TTATAA	1 cut(s)	1377
Psp6I	CCWGG	1 cut(s)	912
PspGI	CCWGG	1 cut(s)	912
PspLI	CGTACG	1 cut(s)	71
PspN4I	GGNNCC	3 cut(s)	186, 629, 654
PspPI	GGNCC	4 cut(s)	10, 225, 445, 910
PsuI	RGATCY	2 cut(s)	53, 513
PsyI	GACNNNGTC	1 cut(s)	143
RsaI	GTAC	3 cut(s)	73, 739, 1045
RsaNI	GTAC	3 cut(s)	72, 738, 1044
RseI	CAYNNNNRTG	2 cut(s)	24, 153
SaqAI	TTAA	4 cut(s)	48, 534, 921, 1238
SatI	GCNGC	1 cut(s)	333
Sau3AI	GATC	7 cut(s)	53, 135, 265, 513, 780, 970, 1241
Sau96I	GGNCC	4 cut(s)	10, 225, 445, 910
SchI	GAGTC	1 cut(s)	264
ScrFI	CCNGG	2 cut(s)	875, 914
SfoI	GGCGCC	1 cut(s)	186
SfuI	TTCGAA	1 cut(s)	616
SmiMI	CAYNNNNRTG	2 cut(s)	24, 153
SmlI	CTYRAG	1 cut(s)	776
SmoI	CTYRAG	1 cut(s)	776
SphI	GCATGC	1 cut(s)	253
Sse9I	AATT	6 cut(s)	753, 848, 883, 901, 1020, 1183
SsiI	CCGC	4 cut(s)	104, 411, 789, 1365
SspDI	GGCGCC	1 cut(s)	184
SspMI	CTAG	3 cut(s)	287, 429, 786
StyD4I	CCNGG	2 cut(s)	873, 912
StyI	CCWWGG	3 cut(s)	561, 578, 717
TaaI	ACNGT	6 cut(s)	23, 71, 236, 549, 963, 1217
TaqI	TCGA	3 cut(s)	138, 616, 1130
TasI	AATT	6 cut(s)	753, 848, 883, 901, 1020, 1183
TfiI	GAWTC	5 cut(s)	290, 583, 1004, 1102, 1172
Tru1I	TTAA	4 cut(s)	48, 534, 921, 1238
Tru9I	TTAA	4 cut(s)	48, 534, 921, 1238
TscAI	CASTG	5 cut(s)	372, 405, 968, 1015, 1053
TseFI	GTSAC	1 cut(s)	1010
TseI	GCWGC	1 cut(s)	332
Tsp45I	GTSAC	1 cut(s)	1010
TspDTI	ATGAA	6 cut(s)	291, 497, 782, 944, 1041, 1387
TspGWI	ACGGA	1 cut(s)	743
TspRI	CASTG	5 cut(s)	372, 405, 968, 1015, 1053
Tth111I	GACNNNGTC	1 cut(s)	143
XapI	RAATTY	1 cut(s)	753
XceI	RCATGY	3 cut(s)	253, 803, 1271
XmiI	GTMKAC	1 cut(s)	1087
XspI	CTAG	3 cut(s)	287, 429, 786

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.