Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003614

Physical Location & Seq

Genomic Coordinates Reverse (-)

2145768 .. 2149218

Gene Structure 3451 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22090

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGAAGAAGAACCTCAGCCCGTTCAGACCAACGGCCAGGGAGGAGGCGGGGACGAGTTCTACGAGGAGATCGAGGCGCCCAAGTTCGTAGACTTCACCACACCAGATCACTTCTGTCCCGACGACCGTTATTGGTTCTGCATGCGCGTCGGGTGTGATCAGAAGCATGAAGAAGAATTAGACTCTGAAGCAATATACAAAAACTTTGTTCTTAGGGTTATGGCAGCAAGAAGTCCGAATGTTAAACTTCGAAAAGCACTAAACAGAAAGTCACCAAGACATGTGCGGCACAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

98

Amino Acids

11.44

Weight (kDa)

5.53

Isoelectric Point (pI)

67.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17000 AT4G17000 AT4G17000
fragaria_vesca	FvH4_2g02560 FvH4_2g02560 FvH4_2g02560 FvH4_2g02560 FvH4_2g02560
malus_domestica	MD05G1112300.v1.1 MD10G1114900.v1.1
prunus_persica	Prupe.8G156900_v2.0.a1 Prupe.8G157000_v2.0.a1
pyrus_communis	pycom02g05590 pycom05g07390 pycom05g10780 pycom07g10710 pycom12g10280 pycom16g18860
rosa_chinensis	RchiOBHm_Chr6g0246371 RchiOBHm_Chr6g0246451 RchiOBHm_Chr6g0246631 RchiOBHm_Chr6g0246641
rosa_laevigata	RLG00000000929 RLG00000015260
rosa_multiflora	Rmu_sc0001066.1_g000005 Rmu_sc0008965.1_g000002
rosa_roxburghii	Rroxscaffold_7G00214640
rosa_rugosa	Rorug05G0520500
rosa_samantha	Rh6AG034800 Rh6AG035100 Rh6BG029900 Rh6CG030300 Rh6DG029200
rosa_wichuraiana	Rw6G002820 Rw6G002980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	76
AccI	GTMKAC	1 cut(s)	90
AccII	CGCG	1 cut(s)	147
AciI	CCGC	2 cut(s)	48, 286
AcoI	YGGCCR	1 cut(s)	34
AcuI	CTGAAG	1 cut(s)	207
AcyI	GRCGYC	1 cut(s)	77
AflIII	ACRYGT	1 cut(s)	280
AjnI	CCWGG	1 cut(s)	36
AoxI	GGCC	1 cut(s)	34
ApeKI	GCWGC	1 cut(s)	224
AspLEI	GCGC	2 cut(s)	79, 147
AsuHPI	GGTGA	2 cut(s)	88, 264
AsuII	TTCGAA	1 cut(s)	250
BanI	GGYRCC	1 cut(s)	76
BbvCI	CCTCAGC	1 cut(s)	15
BbvI	GCAGC	1 cut(s)	236
BceAI	ACGGC	1 cut(s)	49
BcgI	CGANNNNNNTGC	2 cut(s)	130, 164
BciT130I	CCWGG	1 cut(s)	38
BclI	TGATCA	1 cut(s)	157
BfoI	RGCGCY	1 cut(s)	80
BisI	GCNGC	2 cut(s)	225, 287
BlsI	GCNGC	2 cut(s)	226, 288
Bme1390I	CCNGG	1 cut(s)	38
BmiI	GGNNCC	1 cut(s)	78
BmrFI	CCNGG	1 cut(s)	38
Bpu10I	CCTNAGC	1 cut(s)	15
Bpu14I	TTCGAA	1 cut(s)	250
BsaHI	GRCGYC	1 cut(s)	77
BsaJI	CCNNGG	1 cut(s)	37
BseBI	CCWGG	1 cut(s)	38
BseDI	CCNNGG	1 cut(s)	37
BseMII	CTCAG	1 cut(s)	29
BseRI	GAGGAG	2 cut(s)	57, 80
BseXI	GCAGC	1 cut(s)	236
Bsh1236I	CGCG	1 cut(s)	147
Bsh1285I	CGRYCG	1 cut(s)	127
BshFI	GGCC	1 cut(s)	36
BshNI	GGYRCC	1 cut(s)	76
BsiEI	CGRYCG	1 cut(s)	127
BslFI	GGGAC	2 cut(s)	65, 102
BsmFI	GGGAC	2 cut(s)	65, 102
BsnI	GGCC	1 cut(s)	36
Bsp119I	TTCGAA	1 cut(s)	250
Bsp143I	GATC	3 cut(s)	69, 106, 157
BspACI	CCGC	2 cut(s)	48, 286
BspANI	GGCC	1 cut(s)	36
BspCNI	CTCAG	1 cut(s)	28
BspFNI	CGCG	1 cut(s)	147
BspLI	GGNNCC	1 cut(s)	78
BspT104I	TTCGAA	1 cut(s)	250
BspT107I	GGYRCC	1 cut(s)	76
BssECI	CCNNGG	1 cut(s)	37
BssMI	GATC	3 cut(s)	69, 106, 157
BssNI	GRCGYC	1 cut(s)	77
Bst2UI	CCWGG	1 cut(s)	38
Bst4CI	ACNGT	2 cut(s)	128, 293
BstACI	GRCGYC	1 cut(s)	77
BstBI	TTCGAA	1 cut(s)	250
BstC8I	GCNNGC	1 cut(s)	143
BstDEI	CTNAG	2 cut(s)	15, 212
BstFNI	CGCG	1 cut(s)	147
BstH2I	RGCGCY	1 cut(s)	80
BstHHI	GCGC	2 cut(s)	79, 147
BstKTI	GATC	3 cut(s)	72, 109, 160
BstMBI	GATC	3 cut(s)	69, 106, 157
BstMCI	CGRYCG	1 cut(s)	127
BstNI	CCWGG	1 cut(s)	38
BstNSI	RCATGY	2 cut(s)	145, 284
BstSCI	CCNGG	1 cut(s)	36
BstUI	CGCG	1 cut(s)	147
BstV1I	GCAGC	1 cut(s)	236
BsuRI	GGCC	1 cut(s)	36
Cac8I	GCNNGC	1 cut(s)	143
CfoI	GCGC	2 cut(s)	79, 147
CseI	GACGC	1 cut(s)	136
CviAII	CATG	3 cut(s)	142, 167, 281
CviJI	RGCY	2 cut(s)	19, 36
CviKI_1	RGCY	2 cut(s)	19, 36
DdeI	CTNAG	2 cut(s)	15, 212
DinI	GGCGCC	1 cut(s)	78
DpnI	GATC	3 cut(s)	71, 108, 159
DpnII	GATC	3 cut(s)	69, 106, 157
EaeI	YGGCCR	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	207
EcoRII	CCWGG	1 cut(s)	36
EgeI	GGCGCC	1 cut(s)	78
EheI	GGCGCC	1 cut(s)	78
FaeI	CATG	3 cut(s)	145, 170, 284
FaiI	YATR	5 cut(s)	143, 168, 196, 221, 282
FaqI	GGGAC	2 cut(s)	65, 102
FatI	CATG	3 cut(s)	141, 166, 280
FauI	CCCGC	1 cut(s)	41
FbaI	TGATCA	1 cut(s)	157
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	2 cut(s)	225, 287
Fsp4HI	GCNGC	2 cut(s)	225, 287
GlaI	GCGC	2 cut(s)	78, 146
GluI	GCNGC	2 cut(s)	225, 287
HaeII	RGCGCY	1 cut(s)	80
HaeIII	GGCC	1 cut(s)	36
HgaI	GACGC	1 cut(s)	136
HhaI	GCGC	2 cut(s)	79, 147
Hin1I	GRCGYC	1 cut(s)	77
Hin1II	CATG	3 cut(s)	145, 170, 284
Hin6I	GCGC	2 cut(s)	77, 145
HinP1I	GCGC	2 cut(s)	77, 145
HinfI	GANTC	1 cut(s)	182
HphI	GGTGA	2 cut(s)	88, 264
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	4 cut(s)	27, 162, 187, 237
Hpy188III	TCNNGA	1 cut(s)	119
Hpy8I	GTNNAC	1 cut(s)	91
Hpy99I	CGWCG	2 cut(s)	125, 152
HpyCH4III	ACNGT	2 cut(s)	128, 293
HpyCH4V	TGCA	1 cut(s)	141
HpyF3I	CTNAG	2 cut(s)	15, 212
Hsp92I	GRCGYC	1 cut(s)	77
Hsp92II	CATG	3 cut(s)	145, 170, 284
HspAI	GCGC	2 cut(s)	77, 145
KasI	GGCGCC	1 cut(s)	76
Ksp22I	TGATCA	1 cut(s)	157
Kzo9I	GATC	3 cut(s)	69, 106, 157
LpnPI	CCDG	3 cut(s)	23, 50, 117
Lsp1109I	GCAGC	1 cut(s)	236
MaeIII	GTNAC	1 cut(s)	270
MalI	GATC	3 cut(s)	71, 108, 159
MboI	GATC	3 cut(s)	69, 106, 157
MboII	GAAGA	4 cut(s)	17, 20, 182, 185
MluCI	AATT	1 cut(s)	176
Mly113I	GGCGCC	1 cut(s)	77
MlyI	GAGTC	1 cut(s)	176
MnlI	CCTC	5 cut(s)	24, 35, 38, 58, 67
MseI	TTAA	1 cut(s)	243
MspR9I	CCNGG	1 cut(s)	38
MvaI	CCWGG	1 cut(s)	38
MvnI	CGCG	1 cut(s)	147
NarI	GGCGCC	1 cut(s)	77
NdeII	GATC	3 cut(s)	69, 106, 157
NlaIII	CATG	3 cut(s)	145, 170, 284
NlaIV	GGNNCC	1 cut(s)	78
NmuCI	GTSAC	1 cut(s)	270
NspI	RCATGY	2 cut(s)	145, 284
NspV	TTCGAA	1 cut(s)	250
PaeI	GCATGC	1 cut(s)	145
PciI	ACATGT	1 cut(s)	280
PcsI	WCGNNNNNNNCGW	2 cut(s)	60, 69
PkrI	GCNGC	2 cut(s)	226, 288
PleI	GAGTC	1 cut(s)	176
PluTI	GGCGCC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	176
PscI	ACATGT	1 cut(s)	280
Psp6I	CCWGG	1 cut(s)	36
PspGI	CCWGG	1 cut(s)	36
PspN4I	GGNNCC	1 cut(s)	78
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	2 cut(s)	225, 287
Sau3AI	GATC	3 cut(s)	69, 106, 157
SchI	GAGTC	1 cut(s)	176
ScrFI	CCNGG	1 cut(s)	38
SetI	ASST	1 cut(s)	16
SfoI	GGCGCC	1 cut(s)	78
SfuI	TTCGAA	1 cut(s)	250
SphI	GCATGC	1 cut(s)	145
Sse9I	AATT	1 cut(s)	176
SsiI	CCGC	2 cut(s)	48, 286
SspDI	GGCGCC	1 cut(s)	76
StyD4I	CCNGG	1 cut(s)	36
TaaI	ACNGT	2 cut(s)	128, 293
TaqI	TCGA	2 cut(s)	72, 250
TasI	AATT	1 cut(s)	176
TauI	GCSGC	1 cut(s)	289
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TseFI	GTSAC	1 cut(s)	270
TseI	GCWGC	1 cut(s)	224
Tsp45I	GTSAC	1 cut(s)	270
TspDTI	ATGAA	1 cut(s)	183
XceI	RCATGY	2 cut(s)	145, 284
XmiI	GTMKAC	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.