Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0003614

Physical Location & Seq

Genomic Coordinates Forward (+)

12258278 .. 12259192

Gene Structure 915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g10280.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGCTCTTGCGCAGCAGTATGGTGGCTCTGCAGCTCACAACACTTCTTCTTGACAACAACTTATCTGGGTATCTTCCGCCAGAGTTCTCGGAGTTGCCAAGCTTATTAATATTTCAAGTTGACAACAACAACTTTGGTGGGACTACAATTCCAGATTCGTATAGCAACATGTCTAAACTGTTCAAGTTGAGTTTGAGGAACTGCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVP_2 RVT_1 Retrotrans_gag rve

Protein Analysis

70

Amino Acids

7.71

Weight (kDa)

4.86

Isoelectric Point (pI)

44.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17000 AT4G17000 AT4G17000
fragaria_vesca	FvH4_2g02560 FvH4_2g02560 FvH4_2g02560 FvH4_2g02560 FvH4_2g02560
malus_domestica	MD05G1112300.v1.1 MD10G1114900.v1.1
prunus_persica	Prupe.8G156900_v2.0.a1 Prupe.8G157000_v2.0.a1
pyrus_communis	pycom02g05590 pycom05g07390 pycom05g10780 pycom07g10710 pycom12g10280 pycom16g18860
rosa_chinensis	RchiOBHm_Chr6g0246371 RchiOBHm_Chr6g0246451 RchiOBHm_Chr6g0246631 RchiOBHm_Chr6g0246641
rosa_laevigata	RLG00000000929 RLG00000015260
rosa_multiflora	Rmu_sc0001066.1_g000005 Rmu_sc0008965.1_g000002
rosa_roxburghii	Rroxscaffold_7G00214640
rosa_rugosa	Rorug05G0520500
rosa_samantha	Rh6AG034800 Rh6AG035100 Rh6BG029900 Rh6CG030300 Rh6DG029200
rosa_wichuraiana	Rw6G002820 Rw6G002980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	11
AciI	CCGC	1 cut(s)	77
AflIII	ACRYGT	1 cut(s)	168
AgsI	TTSAA	2 cut(s)	116, 184
AluBI	AGCT	2 cut(s)	34, 102
AluI	AGCT	2 cut(s)	34, 102
ApeKI	GCWGC	2 cut(s)	12, 31
AseI	ATTAAT	1 cut(s)	107
AspLEI	GCGC	1 cut(s)	12
BbvI	GCAGC	2 cut(s)	24, 43
BfmI	CTRYAG	1 cut(s)	29
BisI	GCNGC	2 cut(s)	13, 32
BlsI	GCNGC	2 cut(s)	14, 33
BseXI	GCAGC	2 cut(s)	24, 43
BslFI	GGGAC	1 cut(s)	154
BsmFI	GGGAC	1 cut(s)	154
BspACI	CCGC	1 cut(s)	77
BspMAI	CTGCAG	1 cut(s)	33
Bst4CI	ACNGT	1 cut(s)	180
BstHHI	GCGC	1 cut(s)	12
BstNSI	RCATGY	1 cut(s)	172
BstSFI	CTRYAG	1 cut(s)	29
BstV1I	GCAGC	2 cut(s)	24, 43
CfoI	GCGC	1 cut(s)	12
CspCI	CAANNNNNGTGG	2 cut(s)	118, 153
CviAII	CATG	1 cut(s)	169
CviJI	RGCY	3 cut(s)	26, 34, 102
CviKI_1	RGCY	3 cut(s)	26, 34, 102
EciI	GGCGGA	1 cut(s)	66
FaeI	CATG	1 cut(s)	172
FaiI	YATR	3 cut(s)	20, 162, 170
FaqI	GGGAC	1 cut(s)	154
FatI	CATG	1 cut(s)	168
Fnu4HI	GCNGC	2 cut(s)	13, 32
Fsp4HI	GCNGC	2 cut(s)	13, 32
FspI	TGCGCA	1 cut(s)	11
GlaI	GCGC	1 cut(s)	11
GluI	GCNGC	2 cut(s)	13, 32
HhaI	GCGC	1 cut(s)	12
Hin1II	CATG	1 cut(s)	172
Hin6I	GCGC	1 cut(s)	10
HinP1I	GCGC	1 cut(s)	10
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HindIII	AAGCTT	1 cut(s)	100
HinfI	GANTC	1 cut(s)	155
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	1 cut(s)	91
Hpy188III	TCNNGA	2 cut(s)	50, 152
Hpy8I	GTNNAC	1 cut(s)	121
HpyCH4III	ACNGT	1 cut(s)	180
HpyCH4V	TGCA	2 cut(s)	31, 204
Hsp92II	CATG	1 cut(s)	172
HspAI	GCGC	1 cut(s)	10
LpnPI	CCDG	3 cut(s)	51, 93, 165
Lsp1109I	GCAGC	2 cut(s)	24, 43
MboII	GAAGA	2 cut(s)	38, 65
MluCI	AATT	1 cut(s)	147
MnlI	CCTC	1 cut(s)	189
MseI	TTAA	1 cut(s)	107
NlaIII	CATG	1 cut(s)	172
NsbI	TGCGCA	1 cut(s)	11
NspI	RCATGY	1 cut(s)	172
PciI	ACATGT	1 cut(s)	168
PfeI	GAWTC	1 cut(s)	155
PkrI	GCNGC	2 cut(s)	14, 33
PscI	ACATGT	1 cut(s)	168
PshBI	ATTAAT	1 cut(s)	107
PstI	CTGCAG	1 cut(s)	33
SaqAI	TTAA	1 cut(s)	107
SatI	GCNGC	2 cut(s)	13, 32
SetI	ASST	2 cut(s)	36, 104
SfcI	CTRYAG	1 cut(s)	29
Sse9I	AATT	1 cut(s)	147
SsiI	CCGC	1 cut(s)	77
SspI	AATATT	1 cut(s)	111
TaaI	ACNGT	1 cut(s)	180
TasI	AATT	1 cut(s)	147
TfiI	GAWTC	1 cut(s)	155
Tru1I	TTAA	1 cut(s)	107
Tru9I	TTAA	1 cut(s)	107
TseI	GCWGC	2 cut(s)	12, 31
VspI	ATTAAT	1 cut(s)	107
XceI	RCATGY	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.