RchiOBHm_Chr6g0246631

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0003614
Physical Location & Seq
Reverse (-)
2270111 .. 2272169
2059 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22108

Sequence Viewer

Length: 453 bp
ATGGCAGCAAGAAGTCCGAATGTTAGACTTCGAAAAGCACCGAACAGAAAGTCGCCAAGTTTGAAATGCCCACTTACAGCTCCTGCAAAATCTTCAAAGCCTAGAGTTTCAAGGTTGGCCCTGATTTCTTCAATCTCTCATAAGATAGTTGATGCCAAAGATAAGGCCAAACCTTTCCCTTCTAAGATCACTGCAACAATCCCAAATGTTAAAGCAAAGCAACCATCTACTGTAGCCAAAGCTCTTACTACTCCAAGGATCAGAAAACCCATCTCAAATCCAGATACATTTCGAAGTGTTAGGAACCCCAAACCCAAAAATGTTGCGGTGCCAAAGAATAAGACAAGTGAGGGAGGCACAGTTGACATCCTTGAAACAAGAAATAAAGATGGAATAGCTTTTAAATCAATAGCTTCAATTCCTGGTGGAAATCATAGCCGACCTAAGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

16.16

Weight (kDa)

11.61

Isoelectric Point (pI)

43.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 328
AciI CCGC 1 cut(s) 326
AclWI GGATC 1 cut(s) 266
AgsI TTSAA 6 cut(s) 64, 96, 111, 132, 374, 417
AjnI CCWGG 1 cut(s) 421
AluBI AGCT 4 cut(s) 80, 242, 398, 413
AluI AGCT 4 cut(s) 80, 242, 398, 413
AlwI GGATC 1 cut(s) 266
AlwNI CAGNNNCTG 1 cut(s) 83
AoxI GGCC 2 cut(s) 117, 165
ApeKI GCWGC 1 cut(s) 5
ArsI GACNNNNNNTTYG 2 cut(s) 35, 67
AspS9I GGNCC 1 cut(s) 118
AsuII TTCGAA 2 cut(s) 31, 292
BanI GGYRCC 1 cut(s) 328
BbvI GCAGC 1 cut(s) 17
BccI CCATC 3 cut(s) 232, 278, 383
BciT130I CCWGG 1 cut(s) 423
BfaI CTAG 1 cut(s) 102
BfmI CTRYAG 1 cut(s) 231
BglII AGATCT 1 cut(s) 447
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 423
BmgT120I GGNCC 1 cut(s) 118
BmiI GGNNCC 2 cut(s) 305, 330
BmrFI CCNGG 1 cut(s) 423
BmsI GCATC 1 cut(s) 142
Bpu14I TTCGAA 2 cut(s) 31, 292
BsaJI CCNNGG 1 cut(s) 254
BsaXI ACNNNNNCTCC 2 cut(s) 345, 375
BseBI CCWGG 1 cut(s) 423
BseDI CCNNGG 1 cut(s) 254
BseGI GGATG 1 cut(s) 366
BseXI GCAGC 1 cut(s) 17
BshFI GGCC 2 cut(s) 119, 167
BshNI GGYRCC 1 cut(s) 328
BsnI GGCC 2 cut(s) 119, 167
Bsp119I TTCGAA 2 cut(s) 31, 292
Bsp143I GATC 3 cut(s) 186, 258, 447
BspACI CCGC 1 cut(s) 326
BspANI GGCC 2 cut(s) 119, 167
BspLI GGNNCC 2 cut(s) 305, 330
BspPI GGATC 1 cut(s) 266
BspT104I TTCGAA 2 cut(s) 31, 292
BspT107I GGYRCC 1 cut(s) 328
BssECI CCNNGG 1 cut(s) 254
BssMI GATC 3 cut(s) 186, 258, 447
BssT1I CCWWGG 1 cut(s) 254
Bst2UI CCWGG 1 cut(s) 423
Bst4CI ACNGT 2 cut(s) 232, 361
BstBI TTCGAA 2 cut(s) 31, 292
BstDEI CTNAG 2 cut(s) 183, 444
BstF5I GGATG 1 cut(s) 366
BstKTI GATC 3 cut(s) 189, 261, 450
BstMBI GATC 3 cut(s) 186, 258, 447
BstNI CCWGG 1 cut(s) 423
BstSCI CCNGG 1 cut(s) 421
BstSFI CTRYAG 1 cut(s) 231
BstV1I GCAGC 1 cut(s) 17
BstX2I RGATCY 1 cut(s) 447
BstYI RGATCY 1 cut(s) 447
BsuRI GGCC 2 cut(s) 119, 167
BtsCI GGATG 1 cut(s) 366
BtsI GCAGTG 1 cut(s) 189
BtsIMutI CAGTG 1 cut(s) 189
CaiI CAGNNNCTG 1 cut(s) 83
Cfr13I GGNCC 1 cut(s) 118
CviJI RGCY 9 cut(s) 80, 100, 119, 167, 236, 242, 398, 413, 438
CviKI_1 RGCY 9 cut(s) 80, 100, 119, 167, 236, 242, 398, 413, 438
DdeI CTNAG 2 cut(s) 183, 444
DpnI GATC 3 cut(s) 188, 260, 449
DpnII GATC 3 cut(s) 186, 258, 447
DraI TTTAAA 1 cut(s) 403
Eco130I CCWWGG 1 cut(s) 254
EcoRII CCWGG 1 cut(s) 421
EcoT14I CCWWGG 1 cut(s) 254
ErhI CCWWGG 1 cut(s) 254
FaiI YATR 2 cut(s) 141, 435
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 1 cut(s) 353
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 1 cut(s) 102
GluI GCNGC 1 cut(s) 6
HaeIII GGCC 2 cut(s) 119, 167
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
Hpy166II GTNNAC 1 cut(s) 364
Hpy188I TCNGA 3 cut(s) 18, 263, 452
Hpy188III TCNNGA 1 cut(s) 281
Hpy8I GTNNAC 1 cut(s) 364
HpyAV CCTTC 1 cut(s) 189
HpyCH4III ACNGT 2 cut(s) 232, 361
HpyCH4V TGCA 2 cut(s) 86, 194
HpyF3I CTNAG 2 cut(s) 183, 444
Kzo9I GATC 3 cut(s) 186, 258, 447
LmnI GCTCC 1 cut(s) 85
LpnPI CCDG 5 cut(s) 96, 134, 294, 408, 435
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 1 cut(s) 142
MaeI CTAG 1 cut(s) 102
MalI GATC 3 cut(s) 188, 260, 449
MboI GATC 3 cut(s) 186, 258, 447
MboII GAAGA 2 cut(s) 84, 120
MflI RGATCY 1 cut(s) 447
MluCI AATT 1 cut(s) 417
MnlI CCTC 2 cut(s) 343, 347
MseI TTAA 2 cut(s) 210, 402
MspR9I CCNGG 1 cut(s) 423
MvaI CCWGG 1 cut(s) 423
NdeII GATC 3 cut(s) 186, 258, 447
NlaIV GGNNCC 2 cut(s) 305, 330
NspV TTCGAA 2 cut(s) 31, 292
PkrI GCNGC 1 cut(s) 7
Psp6I CCWGG 1 cut(s) 421
PspGI CCWGG 1 cut(s) 421
PspN4I GGNNCC 2 cut(s) 305, 330
PspPI GGNCC 1 cut(s) 118
PstNI CAGNNNCTG 1 cut(s) 83
PsuI RGATCY 1 cut(s) 447
SaqAI TTAA 2 cut(s) 210, 402
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 3 cut(s) 186, 258, 447
Sau96I GGNCC 1 cut(s) 118
ScrFI CCNGG 1 cut(s) 423
SetI ASST 7 cut(s) 82, 116, 175, 244, 400, 415, 445
SfaNI GCATC 1 cut(s) 142
SfcI CTRYAG 1 cut(s) 231
SfuI TTCGAA 2 cut(s) 31, 292
Sse9I AATT 1 cut(s) 417
SsiI CCGC 1 cut(s) 326
SspMI CTAG 1 cut(s) 102
StyD4I CCNGG 1 cut(s) 421
StyI CCWWGG 1 cut(s) 254
TaaI ACNGT 2 cut(s) 232, 361
TaqI TCGA 2 cut(s) 31, 292
TasI AATT 1 cut(s) 417
Tru1I TTAA 2 cut(s) 210, 402
Tru9I TTAA 2 cut(s) 210, 402
TscAI CASTG 1 cut(s) 196
TseI GCWGC 1 cut(s) 5
TspRI CASTG 1 cut(s) 196
XspI CTAG 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.