Rh6CG030300

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Reverse (-)
2699649 .. 2703552
3904 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG030300.1

Sequence Viewer

Length: 1755 bp
ATGGAAGAAGAACCTCAGCCCGTGCAGACCAACGGCCAGGGAGGAGGCAGGGACGAGTTCTACGAGGAGATCGAGGCGCCCAAGTTCGTAGACTTCACCACACCGGATCACTTCTGCCCCGACGACCGTTACTGGTTCTGCATGCGCGTCGGGTGTGATCAGAAGCATGAAGAAGAATTAGACTCTGAAGCGATATACAAGAACTTTGTTCTTAGGGTTATGGCAGCAAGAAGTCCGAATGTTAAACTTCGAAAAGCACTAAACAGAAAGTCGCCAAGTTTGAAATGCCCACTTACAGCTCCTGCAAAATCTTCCAAGCCTAGAGTTTCAAGGTTGGCCCTGATTTCTTCAATCTCTCATAAGATGGTCGATGCCAAAGATAAGGCCAGACCTCTCCATACTAAGATCACTGCAACAACCCCAAATGTTAAGGCAAAGCAACCATCTTCTGTAGCCAAAGCTCTCACTACTCCAAGGAATAGAAAACTCATCTCAAATCCAGATACATTTCGAAGTGTTAGGAACTCCAAACCCAAAAATGTTGTGGTGCCAAAGAATAGGGTCGTGGCAAAAGCTTTGGTCTTCCACTCTCCAAAGAAGGCTGTGAAAACCAAGGGTTCATCGGAATGTGGTAGTAATGTGGGAAAACTTTGTGCAGCCATGAAGAAACTTGATATCACAAGTGGAAAGAAACATGTGTTGGGGTATACCAAGACATTGCCTTCAGATACTCCAAGAAAACAATTGAGAGGGCGAGAGGTCAAAAGCCGGGTTTTTGATTCATTGCATTCTAACAAAGGTAAGGGGCAGGAGGCAAAGTCCTTGAAGAGGAAGAAAATGGAGAAAGACTTGAAGCAGTGTTATGATACAGGGCCTTATGAAGAGGTTGATAATGATCCCAGTGATATGAAGGTTGAAGAAAAATCAAGGCAGGGTTCCTTGGAAGGTTTCTCCAAGTCAGTTGATTCTGAGAGTAATAAAGTAAATGGAGATGAGGAGCATTTGGAAGCTGGAAAAAGTTCAGAATCCTCTTTAAATGAGAATCAAGTTGAAGTGGTATCAGAGACTTCAAAAGCTGATATTAGCTCCTTGTCAAGTTCTGAAAAGAATGATTCAGAAGTGAACTGTGATAAGGAAAAGACCAACGATGGAAATGGACATGAAGATAAACCAAAGTTAAGTTCAGGGATGGGGAAGACCCTTGAACACATGGAGGAAGATGATAAAGAAAATGCCGCCGAACATGACAATGAGATCATGCATATGGATGATAAAGAAAACCATATAACTTCTGAAGATAACAGAGAACAAAAGTGTAATGGCTTGAAGAGGAAAAATCTTGGTAACCATAGTGCTTCCAAAAACTCACAAAAGGTCATTCAAGTAGCAGAAAAGATTCCTAAAGAAAACTCCACATCTGCTGCCACTAGTGCTCAAGGGGTCAAGTATAGTAAACCAAAACCCACAAATCCGAAGCCTTTTAGGTTCAGAACTGATGAAAGAGGGATGCTTAAGGAAGCAAACTTGGAGAAAAAGGTTCATGCACCTCTCAAGGAAATCACATTAGACTCTTTGCCAGAAAAGTCCACAAAAAAACATCAGAATGTCATACAGACAAATAAAACCTGCCTCGGACAAATTGAATATGAGAGTGATAGCCATGGTAGCTGTGAAAAGAGAAGAACCCGATCAGATCAAAATGTAAGTCTATGTTGTCATTGGGAAGATGAAAATGGATTACTCGTGAGACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

584

Amino Acids

65.31

Weight (kDa)

9.04

Isoelectric Point (pI)

42.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1634
AccB1I GGYRCC 2 cut(s) 76, 547
AccI GTMKAC 2 cut(s) 90, 707
AccII CGCG 1 cut(s) 147
AciI CCGC 1 cut(s) 1236
AclWI GGATC 2 cut(s) 114, 890
AcoI YGGCCR 1 cut(s) 34
AcuI CTGAAG 3 cut(s) 207, 708, 1314
AcyI GRCGYC 1 cut(s) 77
AfiI CCNNNNNNNGG 1 cut(s) 828
AflII CTTAAG 1 cut(s) 1511
AflIII ACRYGT 1 cut(s) 694
AhlI ACTAGT 1 cut(s) 1427
AjnI CCWGG 1 cut(s) 36
AjuI GAANNNNNNNTTGG 4 cut(s) 683, 715, 1165, 1197
AluBI AGCT 7 cut(s) 299, 461, 575, 1010, 1076, 1086, 1668
AluI AGCT 7 cut(s) 299, 461, 575, 1010, 1076, 1086, 1668
Alw21I GWGCWC 1 cut(s) 1435
Alw26I GTCTC 2 cut(s) 1058, 1741
AlwI GGATC 2 cut(s) 114, 890
AlwNI CAGNNNCTG 1 cut(s) 302
AoxI GGCC 4 cut(s) 34, 336, 384, 872
ApeKI GCWGC 3 cut(s) 224, 656, 1421
ArsI GACNNNNNNTTYG 2 cut(s) 1690, 1722
Asp700I GAANNNNTTC 2 cut(s) 1018, 1395
AspLEI GCGC 2 cut(s) 79, 147
AspS9I GGNCC 2 cut(s) 337, 872
AsuC2I CCSGG 1 cut(s) 770
AsuHPI GGTGA 1 cut(s) 88
AsuII TTCGAA 2 cut(s) 250, 511
BanI GGYRCC 2 cut(s) 76, 547
BauI CACGAG 1 cut(s) 1742
BbsI GAAGAC 2 cut(s) 574, 1202
Bbv12I GWGCWC 1 cut(s) 1435
BbvCI CCTCAGC 1 cut(s) 15
BbvI GCAGC 3 cut(s) 236, 668, 1408
BccI CCATC 4 cut(s) 358, 451, 1142, 1183
BceAI ACGGC 1 cut(s) 49
BcgI CGANNNNNNTGC 2 cut(s) 130, 164
BciT130I CCWGG 1 cut(s) 38
BclI TGATCA 1 cut(s) 157
BcnI CCSGG 1 cut(s) 770
BcoDI GTCTC 2 cut(s) 1058, 1741
BcuI ACTAGT 1 cut(s) 1427
BfaI CTAG 2 cut(s) 321, 1428
BfmI CTRYAG 1 cut(s) 450
BfoI RGCGCY 1 cut(s) 80
BfrI CTTAAG 1 cut(s) 1511
BfuAI ACCTGC 1 cut(s) 1634
BisI GCNGC 4 cut(s) 225, 657, 1236, 1422
BlsI GCNGC 4 cut(s) 226, 658, 1237, 1423
Bme1390I CCNGG 2 cut(s) 38, 770
BmgT120I GGNCC 2 cut(s) 337, 872
BmiI GGNNCC 3 cut(s) 78, 549, 937
BmrFI CCNGG 2 cut(s) 38, 770
BmrI ACTGGG 1 cut(s) 894
BmsI GCATC 2 cut(s) 361, 1497
BmuI ACTGGG 1 cut(s) 894
BpiI GAAGAC 2 cut(s) 574, 1202
Bpu10I CCTNAGC 1 cut(s) 15
Bpu14I TTCGAA 2 cut(s) 250, 511
BpuEI CTTGAG 2 cut(s) 1419, 1535
BpuMI CCSGG 1 cut(s) 770
BsaBI GATNNNNATC 1 cut(s) 894
BsaHI GRCGYC 1 cut(s) 77
BsaI GGTCTC 1 cut(s) 1741
BsaJI CCNNGG 6 cut(s) 37, 473, 612, 939, 1630, 1660
BsaWI WCCGGW 1 cut(s) 103
BsaXI ACNNNNNCTCC 2 cut(s) 803, 833
Bsc4I CCNNNNNNNGG 1 cut(s) 828
Bse1I ACTGG 2 cut(s) 137, 900
Bse3DI GCAATG 2 cut(s) 716, 782
Bse8I GATNNNNATC 1 cut(s) 894
BseBI CCWGG 1 cut(s) 38
BseDI CCNNGG 6 cut(s) 37, 473, 612, 939, 1630, 1660
BseGI GGATG 3 cut(s) 1194, 1273, 1512
BseJI GATNNNNATC 1 cut(s) 894
BseLI CCNNNNNNNGG 1 cut(s) 828
BseMI GCAATG 2 cut(s) 716, 782
BseMII CTCAG 2 cut(s) 29, 960
BseNI ACTGG 2 cut(s) 137, 900
BseRI GAGGAG 3 cut(s) 57, 80, 1010
BseXI GCAGC 3 cut(s) 236, 668, 1408
BsgI GTGCAG 2 cut(s) 44, 675
Bsh1236I CGCG 1 cut(s) 147
Bsh1285I CGRYCG 1 cut(s) 127
BshFI GGCC 4 cut(s) 36, 338, 386, 874
BshNI GGYRCC 2 cut(s) 76, 547
BsiEI CGRYCG 1 cut(s) 127
BsiHKAI GWGCWC 1 cut(s) 1435
BsiSI CCGG 2 cut(s) 104, 769
BslFI GGGAC 1 cut(s) 65
BslI CCNNNNNNNGG 1 cut(s) 828
BsmAI GTCTC 2 cut(s) 1058, 1741
BsmFI GGGAC 1 cut(s) 65
BsmI GAATGC 1 cut(s) 787
BsnI GGCC 4 cut(s) 36, 338, 386, 874
Bso31I GGTCTC 1 cut(s) 1741
Bsp119I TTCGAA 2 cut(s) 250, 511
Bsp1286I GDGCHC 1 cut(s) 1435
Bsp143I GATC 8 cut(s) 69, 106, 157, 405, 895, 1254, 1688, 1693
Bsp19I CCATGG 1 cut(s) 1660
BspACI CCGC 1 cut(s) 1236
BspANI GGCC 4 cut(s) 36, 338, 386, 874
BspCNI CTCAG 2 cut(s) 28, 961
BspFNI CGCG 1 cut(s) 147
BspLI GGNNCC 3 cut(s) 78, 549, 937
BspMI ACCTGC 1 cut(s) 1634
BspPI GGATC 2 cut(s) 114, 890
BspT104I TTCGAA 2 cut(s) 250, 511
BspT107I GGYRCC 2 cut(s) 76, 547
BspTI CTTAAG 1 cut(s) 1511
BspTNI GGTCTC 1 cut(s) 1741
BsrDI GCAATG 2 cut(s) 716, 782
BsrI ACTGG 2 cut(s) 137, 900
BssECI CCNNGG 6 cut(s) 37, 473, 612, 939, 1630, 1660
BssMI GATC 8 cut(s) 69, 106, 157, 405, 895, 1254, 1688, 1693
BssNAI GTATAC 1 cut(s) 708
BssNI GRCGYC 1 cut(s) 77
BssSI CACGAG 1 cut(s) 1742
BssT1I CCWWGG 4 cut(s) 473, 612, 939, 1660
Bst1107I GTATAC 1 cut(s) 708
Bst2BI CACGAG 1 cut(s) 1742
Bst2UI CCWGG 1 cut(s) 38
Bst4CI ACNGT 2 cut(s) 128, 1127
Bst6I CTCTTC 3 cut(s) 821, 876, 1322
BstACI GRCGYC 1 cut(s) 77
BstAFI CTTAAG 1 cut(s) 1511
BstBI TTCGAA 2 cut(s) 250, 511
BstC8I GCNNGC 1 cut(s) 143
BstDEI CTNAG 4 cut(s) 15, 212, 402, 969
BstDSI CCRYGG 1 cut(s) 1660
BstEII GGTNACC 1 cut(s) 1343
BstENI CCTNNNNNAGG 1 cut(s) 826
BstF5I GGATG 3 cut(s) 1194, 1273, 1512
BstFNI CGCG 1 cut(s) 147
BstH2I RGCGCY 1 cut(s) 80
BstHHI GCGC 2 cut(s) 79, 147
BstKTI GATC 8 cut(s) 72, 109, 160, 408, 898, 1257, 1691, 1696
BstMAI GTCTC 2 cut(s) 1058, 1741
BstMBI GATC 8 cut(s) 69, 106, 157, 405, 895, 1254, 1688, 1693
BstMCI CGRYCG 1 cut(s) 127
BstMWI GCNNNNNNNGC 2 cut(s) 1430, 1665
BstNI CCWGG 1 cut(s) 38
BstNSI RCATGY 2 cut(s) 145, 698
BstPI GGTNACC 1 cut(s) 1343
BstSCI CCNGG 2 cut(s) 36, 768
BstSFI CTRYAG 1 cut(s) 450
BstUI CGCG 1 cut(s) 147
BstV1I GCAGC 3 cut(s) 236, 668, 1408
BstV2I GAAGAC 2 cut(s) 574, 1202
BstZ17I GTATAC 1 cut(s) 708
BsuRI GGCC 4 cut(s) 36, 338, 386, 874
BtgI CCRYGG 1 cut(s) 1660
BtsCI GGATG 3 cut(s) 1194, 1273, 1512
BtsI GCAGTG 2 cut(s) 408, 863
BtsIMutI CAGTG 3 cut(s) 408, 863, 907
BveI ACCTGC 1 cut(s) 1634
Cac8I GCNNGC 1 cut(s) 143
CaiI CAGNNNCTG 1 cut(s) 302
CfoI GCGC 2 cut(s) 79, 147
Cfr13I GGNCC 2 cut(s) 337, 872
CseI GACGC 1 cut(s) 136
DdeI CTNAG 4 cut(s) 15, 212, 402, 969
DinI GGCGCC 1 cut(s) 78
DpnI GATC 8 cut(s) 71, 108, 159, 407, 897, 1256, 1690, 1695
DpnII GATC 8 cut(s) 69, 106, 157, 405, 895, 1254, 1688, 1693
DraI TTTAAA 1 cut(s) 1035
EaeI YGGCCR 1 cut(s) 34
Eam1104I CTCTTC 3 cut(s) 821, 876, 1322
EarI CTCTTC 3 cut(s) 821, 876, 1322
Eco130I CCWWGG 4 cut(s) 473, 612, 939, 1660
Eco31I GGTCTC 1 cut(s) 1741
Eco32I GATATC 1 cut(s) 676
Eco57I CTGAAG 3 cut(s) 207, 708, 1314
Eco91I GGTNACC 1 cut(s) 1343
EcoNI CCTNNNNNAGG 1 cut(s) 826
EcoO109I RGGNCCY 1 cut(s) 872
EcoO65I GGTNACC 1 cut(s) 1343
EcoRII CCWGG 1 cut(s) 36
EcoRV GATATC 1 cut(s) 676
EcoT14I CCWWGG 4 cut(s) 473, 612, 939, 1660
EcoT22I ATGCAT 1 cut(s) 1263
EgeI GGCGCC 1 cut(s) 78
EheI GGCGCC 1 cut(s) 78
ErhI CCWWGG 4 cut(s) 473, 612, 939, 1660
FaqI GGGAC 1 cut(s) 65
FauNDI CATATG 1 cut(s) 1263
FbaI TGATCA 1 cut(s) 157
FblI GTMKAC 2 cut(s) 90, 707
Fnu4HI GCNGC 4 cut(s) 225, 657, 1236, 1422
FokI GGATG 3 cut(s) 1201, 1280, 1519
Fsp4HI GCNGC 4 cut(s) 225, 657, 1236, 1422
FspBI CTAG 2 cut(s) 321, 1428
GlaI GCGC 2 cut(s) 78, 146
GluI GCNGC 4 cut(s) 225, 657, 1236, 1422
HaeII RGCGCY 1 cut(s) 80
HaeIII GGCC 4 cut(s) 36, 338, 386, 874
HapII CCGG 2 cut(s) 104, 769
HgaI GACGC 1 cut(s) 136
HhaI GCGC 2 cut(s) 79, 147
Hin1I GRCGYC 1 cut(s) 77
Hin6I GCGC 2 cut(s) 77, 145
HinP1I GCGC 2 cut(s) 77, 145
HindIII AAGCTT 1 cut(s) 573
HinfI GANTC 8 cut(s) 182, 779, 965, 1025, 1042, 1112, 1396, 1568
HpaII CCGG 2 cut(s) 104, 769
HphI GGTGA 1 cut(s) 88
Hpy166II GTNNAC 5 cut(s) 91, 708, 1123, 1454, 1587
Hpy188III TCNNGA 2 cut(s) 500, 1744
Hpy8I GTNNAC 5 cut(s) 91, 708, 1123, 1454, 1587
Hpy99I CGWCG 2 cut(s) 125, 152
HpyAV CCTTC 4 cut(s) 592, 732, 904, 938
HpyCH4III ACNGT 2 cut(s) 128, 1127
HpyCH4V TGCA 8 cut(s) 25, 141, 305, 413, 656, 787, 1261, 1544
HpyF10VI GCNNNNNNNGC 2 cut(s) 1430, 1665
HpyF3I CTNAG 4 cut(s) 15, 212, 402, 969
Hsp92I GRCGYC 1 cut(s) 77
HspAI GCGC 2 cut(s) 77, 145
KasI GGCGCC 1 cut(s) 76
Ksp22I TGATCA 1 cut(s) 157
Kzo9I GATC 8 cut(s) 69, 106, 157, 405, 895, 1254, 1688, 1693
LmnI GCTCC 3 cut(s) 304, 997, 1091
Lsp1109I GCAGC 3 cut(s) 236, 668, 1408
LweI GCATC 2 cut(s) 361, 1497
MaeI CTAG 2 cut(s) 321, 1428
MaeIII GTNAC 2 cut(s) 128, 1343
MalI GATC 8 cut(s) 71, 108, 159, 407, 897, 1256, 1690, 1695
MboI GATC 8 cut(s) 69, 106, 157, 405, 895, 1254, 1688, 1693
MfeI CAATTG 1 cut(s) 743
MhlI GDGCHC 1 cut(s) 1435
MluCI AATT 3 cut(s) 176, 743, 1638
Mly113I GGCGCC 1 cut(s) 77
MlyI GAGTC 2 cut(s) 176, 1562
Mph1103I ATGCAT 1 cut(s) 1263
MroXI GAANNNNTTC 2 cut(s) 1018, 1395
MseI TTAA 5 cut(s) 243, 429, 1034, 1178, 1512
MslI CAYNNNNRTG 5 cut(s) 625, 1248, 1262, 1266, 1602
MspCI CTTAAG 1 cut(s) 1511
MspI CCGG 2 cut(s) 104, 769
MspR9I CCNGG 2 cut(s) 38, 770
MunI CAATTG 1 cut(s) 743
Mva1269I GAATGC 1 cut(s) 787
MvaI CCWGG 1 cut(s) 38
MvnI CGCG 1 cut(s) 147
MwoI GCNNNNNNNGC 2 cut(s) 1430, 1665
NarI GGCGCC 1 cut(s) 77
NciI CCSGG 1 cut(s) 770
NcoI CCATGG 1 cut(s) 1660
NdeI CATATG 1 cut(s) 1263
NdeII GATC 8 cut(s) 69, 106, 157, 405, 895, 1254, 1688, 1693
NlaIV GGNNCC 3 cut(s) 78, 549, 937
NsiI ATGCAT 1 cut(s) 1263
NspI RCATGY 2 cut(s) 145, 698
NspV TTCGAA 2 cut(s) 250, 511
PaeI GCATGC 1 cut(s) 145
PciI ACATGT 1 cut(s) 694
PcsI WCGNNNNNNNCGW 2 cut(s) 60, 69
PctI GAATGC 1 cut(s) 787
PdmI GAANNNNTTC 2 cut(s) 1018, 1395
PfeI GAWTC 6 cut(s) 779, 965, 1025, 1042, 1112, 1396
PkrI GCNGC 4 cut(s) 226, 658, 1237, 1423
PleI GAGTC 2 cut(s) 176, 1562
PluTI GGCGCC 1 cut(s) 80
PpsI GAGTC 2 cut(s) 176, 1562
PscI ACATGT 1 cut(s) 694
Psp6I CCWGG 1 cut(s) 36
PspEI GGTNACC 1 cut(s) 1343
PspGI CCWGG 1 cut(s) 36
PspN4I GGNNCC 3 cut(s) 78, 549, 937
PspPI GGNCC 2 cut(s) 337, 872
PstNI CAGNNNCTG 1 cut(s) 302
RseI CAYNNNNRTG 5 cut(s) 625, 1248, 1262, 1266, 1602
SaqAI TTAA 5 cut(s) 243, 429, 1034, 1178, 1512
SatI GCNGC 4 cut(s) 225, 657, 1236, 1422
Sau3AI GATC 8 cut(s) 69, 106, 157, 405, 895, 1254, 1688, 1693
Sau96I GGNCC 2 cut(s) 337, 872
SchI GAGTC 2 cut(s) 176, 1562
ScrFI CCNGG 2 cut(s) 38, 770
SduI GDGCHC 1 cut(s) 1435
SfaNI GCATC 2 cut(s) 361, 1497
SfcI CTRYAG 1 cut(s) 450
SfoI GGCGCC 1 cut(s) 78
SfuI TTCGAA 2 cut(s) 250, 511
SmiMI CAYNNNNRTG 5 cut(s) 625, 1248, 1262, 1266, 1602
SmlI CTYRAG 3 cut(s) 1434, 1511, 1550
SmoI CTYRAG 3 cut(s) 1434, 1511, 1550
SpeI ACTAGT 1 cut(s) 1427
SphI GCATGC 1 cut(s) 145
Sse9I AATT 3 cut(s) 176, 743, 1638
SsiI CCGC 1 cut(s) 1236
SspDI GGCGCC 1 cut(s) 76
SspMI CTAG 2 cut(s) 321, 1428
StyD4I CCNGG 2 cut(s) 36, 768
StyI CCWWGG 4 cut(s) 473, 612, 939, 1660
TaaI ACNGT 2 cut(s) 128, 1127
TaqI TCGA 4 cut(s) 72, 250, 369, 511
TasI AATT 3 cut(s) 176, 743, 1638
TauI GCSGC 1 cut(s) 1238
TfiI GAWTC 6 cut(s) 779, 965, 1025, 1042, 1112, 1396
Tru1I TTAA 5 cut(s) 243, 429, 1034, 1178, 1512
Tru9I TTAA 5 cut(s) 243, 429, 1034, 1178, 1512
TscAI CASTG 3 cut(s) 415, 863, 907
TseI GCWGC 3 cut(s) 224, 656, 1421
TspRI CASTG 3 cut(s) 415, 863, 907
Vha464I CTTAAG 1 cut(s) 1511
XagI CCTNNNNNAGG 1 cut(s) 826
XceI RCATGY 2 cut(s) 145, 698
XcmI CCANNNNNNNNNTGG 1 cut(s) 541
XmiI GTMKAC 2 cut(s) 90, 707
XmnI GAANNNNTTC 2 cut(s) 1018, 1395
XspI CTAG 2 cut(s) 321, 1428
Zsp2I ATGCAT 1 cut(s) 1263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.