Rroxscaffold_7G00214640

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
65297700 .. 65300783
3084 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00214640.1

Sequence Viewer

Length: 1932 bp
ATGCTAAGGCCTAATTGGTGTGATCAGAAGCATGAAGAAGAATTAGACTCTGAAGCAATATATAAGAACTTTGTTCTTCGGGTTATGGCAGCAAGAAGTCCGAATGTTAAACTTCGAAAAGCACTAAACAGAAAGTCGCCAAGTTTGAAATGCCCACTTACGGCTCCTGCAAAATCTTCTAAGCCTAGAGTTTCAAGGTTGGCCCTGATTTCTTCAATCTCTCATAAGATAGTTGATGCCAAATATAAGGCCAGACCTCTCCATACTAAGATCACTGCAACAACCCCAAATGTTAAGGCAAAGCAACCATCTTCTGTAGCCAAAGCTCTCACTACTCCAAGGAATAGAAAACCCATCTCAAATCCAGATACATTTCGGAGTGTTAGGAACTCCAAAGCCAAAAATGTTGTGGTGCCAAAGAATAGGATCGTGGCAAAAGCTTTGGTCTTCAACTCTCCAAAGAAGGCTGTGAAAACCAAGGGTTCATCGGAATGTGGTAGTAATGTGGGAAAACTTTGTGCAGCCATGAAGAAACTTGATATCACAAGTGGAAAGAAACATGTATTGGGGTATACCAAGACATTGCCTTTAGATACTCCAAGAAAACAATTGAGAGGGCGAGAGGTCAAAAGCCGGGTTTTTGATTCATTGCATTCTAACAAAGGTAAGGGGCAGGAGGCAAAGTCCTTGAAGAGGAAGAAAATGGAGAAAGATTTGAAGCAGTGTTATGATACAGGGCCTTATGAAGAGGTTGATAATGATCCCAGTGATGTGAAGGTTGAAGAAAAATCACGGAATGGTTCCTTGGAAGGTTTCTCCAAGTCAGTTGATTCTAAAAGTAATAAAGTAAATGGAGATGAGGAGCATTTGGAAGCTGGAAAAAGTTCAGAATCCTCTTTAAATGAGAATCAAGTTGAAGTGGTATCAGAAACTTCAAAAGCTGATATTAGCTCCTTGTCAAGTTCTGAAAAGAATGATTCGGAAGTGAACTGTGATAAGGAAAAGACCAACAATGGAAATGGACATGAAGATAAACCAAAGTTAAGTTCAGGGATGGGGAAGACCCTTGAACACATGGAGGAAGATGATAAAGAAAATGCTGTAGCCTCGGACAACACCGAACATGACAATGAGATCATGCATAAGGATGATAAAGAAAACCGTATAACTTCTGAAGATAACAGAGAACAAAAGCGTAATGGCTTGAAGAGGAAAAATCTTGGTAACCATAGTGCTTCCAAAAACTCACAAAAGGTCATTCAAGTAGCAGAAAAGATTCCCAAAGAAAACTCCACATCAGCTGCCACTAGTGCTCAAGGGGTCAAGTATAGTAAACCAAAACCCACAAATCCGAAGCCTTTTAGGTTCAGAACTGATGAAAGAGGGATGCTTAAGGAAGCAAACTTGGAGAAAAAGGTTCATGCACCTCTCAAGGAAATCACATTAGACACTCTGCCAGAAATGTCCACAAAAAAACATCAGAATGTGATACAGGGGAAGGTAGGAGCTACTTGCTTCAAGACTTCAAAAGGAGACTTAGAACGGAAGTTATCTGTAATGACTCCTCCACAAAGATGTAAAGTTTTGACCGCACAAAAACCACAGAAGGAAAGAACAAAGTCACCTATGGTGCAGCCAAGTTTTGCAAGACCAAGAGGGGTGGATTCAAGTAAGAAGAAGTCTGCCTCCAAGACACCTTGCCAACTCAGTATAATAAAGGAAAGCGTATCAACAAATATAAGACCCAGGAAAGCAGCAAAACCGTGTGGTGTTTCTTCAGCAACCAAAGCTCGTACTCCTTCTCGGTCATCATCACGGGGAAGAAGGCCTGCAACCATTCCAAAGGAGCCACACTTTCACACTATCCATGTACCGAAGGACTGTACAAGGCTGCAGAAGGAAAATGACTTTACTGATGCCCAACAAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

643

Amino Acids

71.37

Weight (kDa)

9.89

Isoelectric Point (pI)

36.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 412
AccI GTMKAC 1 cut(s) 572
AciI CCGC 1 cut(s) 1590
AclWI GGATC 2 cut(s) 434, 755
AcuI CTGAAG 3 cut(s) 72, 1194, 1761
AfaI GTAC 3 cut(s) 1795, 1872, 1885
AfiI CCNNNNNNNGG 2 cut(s) 160, 693
AflII CTTAAG 1 cut(s) 1391
AflIII ACRYGT 1 cut(s) 559
AhlI ACTAGT 1 cut(s) 1307
AjnI CCWGG 1 cut(s) 1745
AjuI GAANNNNNNNTTGG 6 cut(s) 548, 580, 788, 820, 1030, 1062
AluBI AGCT 8 cut(s) 326, 440, 875, 941, 951, 1301, 1508, 1790
AluI AGCT 8 cut(s) 326, 440, 875, 941, 951, 1301, 1508, 1790
Alw21I GWGCWC 1 cut(s) 1315
Alw26I GTCTC 1 cut(s) 1527
AlwI GGATC 2 cut(s) 434, 755
AoxI GGCC 5 cut(s) 8, 201, 249, 737, 1826
ApeKI GCWGC 6 cut(s) 89, 521, 1301, 1633, 1754, 1891
Asp700I GAANNNNTTC 2 cut(s) 883, 1275
AspS9I GGNCC 2 cut(s) 202, 737
AsuC2I CCSGG 1 cut(s) 635
AsuHPI GGTGA 1 cut(s) 1614
AsuII TTCGAA 1 cut(s) 115
BanI GGYRCC 1 cut(s) 412
BbsI GAAGAC 2 cut(s) 439, 1067
Bbv12I GWGCWC 1 cut(s) 1315
BbvI GCAGC 6 cut(s) 101, 533, 1288, 1645, 1766, 1878
BccI CCATC 3 cut(s) 316, 362, 1048
BceAI ACGGC 1 cut(s) 177
BciT130I CCWGG 1 cut(s) 1747
BclI TGATCA 1 cut(s) 22
BcnI CCSGG 1 cut(s) 635
BcoDI GTCTC 1 cut(s) 1527
BcuI ACTAGT 1 cut(s) 1307
BfaI CTAG 2 cut(s) 186, 1308
BfmI CTRYAG 3 cut(s) 315, 1101, 1892
BfrI CTTAAG 1 cut(s) 1391
BisI GCNGC 6 cut(s) 90, 522, 1302, 1634, 1755, 1892
BlsI GCNGC 6 cut(s) 91, 523, 1303, 1635, 1756, 1893
Bme1390I CCNGG 2 cut(s) 635, 1747
BmgT120I GGNCC 2 cut(s) 202, 737
BmiI GGNNCC 4 cut(s) 165, 414, 802, 1848
BmrFI CCNGG 2 cut(s) 635, 1747
BmrI ACTGGG 1 cut(s) 759
BmsI GCATC 3 cut(s) 226, 1377, 1906
BmuI ACTGGG 1 cut(s) 759
BpiI GAAGAC 2 cut(s) 439, 1067
Bpu10I CCTNAGC 1 cut(s) 5
Bpu14I TTCGAA 1 cut(s) 115
BpuEI CTTGAG 2 cut(s) 1299, 1415
BpuMI CCSGG 1 cut(s) 635
BsaBI GATNNNNATC 1 cut(s) 759
BsaJI CCNNGG 5 cut(s) 338, 477, 804, 1107, 1745
BsaXI ACNNNNNCTCC 2 cut(s) 668, 698
Bsc4I CCNNNNNNNGG 2 cut(s) 160, 693
Bse1I ACTGG 1 cut(s) 765
Bse3DI GCAATG 2 cut(s) 581, 647
Bse8I GATNNNNATC 1 cut(s) 759
BseBI CCWGG 1 cut(s) 1747
BseDI CCNNGG 5 cut(s) 338, 477, 804, 1107, 1745
BseGI GGATG 3 cut(s) 1059, 1153, 1392
BseJI GATNNNNATC 1 cut(s) 759
BseLI CCNNNNNNNGG 2 cut(s) 160, 693
BseMI GCAATG 2 cut(s) 581, 647
BseMII CTCAG 1 cut(s) 1720
BseNI ACTGG 1 cut(s) 765
BseRI GAGGAG 2 cut(s) 875, 1554
BseXI GCAGC 6 cut(s) 101, 533, 1288, 1645, 1766, 1878
BsgI GTGCAG 2 cut(s) 540, 1652
BshFI GGCC 5 cut(s) 10, 203, 251, 739, 1828
BshNI GGYRCC 1 cut(s) 412
BsiHKAI GWGCWC 1 cut(s) 1315
BsiSI CCGG 1 cut(s) 634
BslI CCNNNNNNNGG 2 cut(s) 160, 693
BsmAI GTCTC 1 cut(s) 1527
BsmI GAATGC 1 cut(s) 652
BsnI GGCC 5 cut(s) 10, 203, 251, 739, 1828
Bsp119I TTCGAA 1 cut(s) 115
Bsp1286I GDGCHC 1 cut(s) 1315
Bsp1407I TGTACA 1 cut(s) 1883
Bsp143I GATC 5 cut(s) 22, 270, 426, 760, 1134
BspACI CCGC 1 cut(s) 1590
BspANI GGCC 5 cut(s) 10, 203, 251, 739, 1828
BspCNI CTCAG 1 cut(s) 1719
BspLI GGNNCC 4 cut(s) 165, 414, 802, 1848
BspMAI CTGCAG 1 cut(s) 1896
BspPI GGATC 2 cut(s) 434, 755
BspT104I TTCGAA 1 cut(s) 115
BspT107I GGYRCC 1 cut(s) 412
BspTI CTTAAG 1 cut(s) 1391
BsrDI GCAATG 2 cut(s) 581, 647
BsrGI TGTACA 1 cut(s) 1883
BsrI ACTGG 1 cut(s) 765
BssECI CCNNGG 5 cut(s) 338, 477, 804, 1107, 1745
BssMI GATC 5 cut(s) 22, 270, 426, 760, 1134
BssNAI GTATAC 1 cut(s) 573
BssT1I CCWWGG 3 cut(s) 338, 477, 804
Bst1107I GTATAC 1 cut(s) 573
Bst2UI CCWGG 1 cut(s) 1747
Bst4CI ACNGT 4 cut(s) 992, 1163, 1764, 1883
Bst6I CTCTTC 3 cut(s) 686, 741, 1202
BstAFI CTTAAG 1 cut(s) 1391
BstAUI TGTACA 1 cut(s) 1883
BstBI TTCGAA 1 cut(s) 115
BstC8I GCNNGC 1 cut(s) 1830
BstDEI CTNAG 5 cut(s) 5, 180, 267, 1537, 1706
BstEII GGTNACC 1 cut(s) 1223
BstENI CCTNNNNNAGG 1 cut(s) 691
BstF5I GGATG 3 cut(s) 1059, 1153, 1392
BstKTI GATC 5 cut(s) 25, 273, 429, 763, 1137
BstMAI GTCTC 1 cut(s) 1527
BstMBI GATC 5 cut(s) 22, 270, 426, 760, 1134
BstMWI GCNNNNNNNGC 2 cut(s) 1310, 1787
BstNI CCWGG 1 cut(s) 1747
BstNSI RCATGY 1 cut(s) 563
BstPI GGTNACC 1 cut(s) 1223
BstSCI CCNGG 2 cut(s) 633, 1745
BstSFI CTRYAG 3 cut(s) 315, 1101, 1892
BstV1I GCAGC 6 cut(s) 101, 533, 1288, 1645, 1766, 1878
BstV2I GAAGAC 2 cut(s) 439, 1067
BstZ17I GTATAC 1 cut(s) 573
BsuRI GGCC 5 cut(s) 10, 203, 251, 739, 1828
BtsCI GGATG 3 cut(s) 1059, 1153, 1392
BtsI GCAGTG 2 cut(s) 273, 728
BtsIMutI CAGTG 3 cut(s) 273, 728, 772
Cac8I GCNNGC 1 cut(s) 1830
Cfr13I GGNCC 2 cut(s) 202, 737
Csp6I GTAC 3 cut(s) 1794, 1871, 1884
CspCI CAANNNNNGTGG 2 cut(s) 1641, 1676
CviAII CATG 9 cut(s) 32, 526, 560, 1025, 1075, 1124, 1138, 1421, 1868
CviQI GTAC 3 cut(s) 1794, 1871, 1884
DdeI CTNAG 5 cut(s) 5, 180, 267, 1537, 1706
DpnI GATC 5 cut(s) 24, 272, 428, 762, 1136
DpnII GATC 5 cut(s) 22, 270, 426, 760, 1134
DraI TTTAAA 1 cut(s) 900
Eam1104I CTCTTC 3 cut(s) 686, 741, 1202
EarI CTCTTC 3 cut(s) 686, 741, 1202
Eco130I CCWWGG 3 cut(s) 338, 477, 804
Eco147I AGGCCT 2 cut(s) 10, 1828
Eco32I GATATC 1 cut(s) 541
Eco57I CTGAAG 3 cut(s) 72, 1194, 1761
Eco91I GGTNACC 1 cut(s) 1223
EcoNI CCTNNNNNAGG 1 cut(s) 691
EcoO109I RGGNCCY 1 cut(s) 737
EcoO65I GGTNACC 1 cut(s) 1223
EcoRII CCWGG 1 cut(s) 1745
EcoRV GATATC 1 cut(s) 541
EcoT14I CCWWGG 3 cut(s) 338, 477, 804
EcoT22I ATGCAT 1 cut(s) 1143
ErhI CCWWGG 3 cut(s) 338, 477, 804
FaeI CATG 9 cut(s) 35, 529, 563, 1028, 1078, 1127, 1141, 1424, 1871
FatI CATG 9 cut(s) 31, 525, 559, 1024, 1074, 1123, 1137, 1420, 1867
FbaI TGATCA 1 cut(s) 22
FblI GTMKAC 1 cut(s) 572
Fnu4HI GCNGC 6 cut(s) 90, 522, 1302, 1634, 1755, 1892
FokI GGATG 3 cut(s) 1066, 1160, 1399
Fsp4HI GCNGC 6 cut(s) 90, 522, 1302, 1634, 1755, 1892
FspBI CTAG 2 cut(s) 186, 1308
GluI GCNGC 6 cut(s) 90, 522, 1302, 1634, 1755, 1892
HaeIII GGCC 5 cut(s) 10, 203, 251, 739, 1828
HapII CCGG 1 cut(s) 634
Hin1II CATG 9 cut(s) 35, 529, 563, 1028, 1078, 1127, 1141, 1424, 1871
HindIII AAGCTT 1 cut(s) 438
HinfI GANTC 9 cut(s) 47, 644, 830, 890, 907, 977, 1276, 1561, 1664
HpaII CCGG 1 cut(s) 634
HphI GGTGA 1 cut(s) 1614
Hpy166II GTNNAC 4 cut(s) 573, 988, 1334, 1467
Hpy188III TCNNGA 2 cut(s) 365, 1519
Hpy8I GTNNAC 4 cut(s) 573, 988, 1334, 1467
HpyAV CCTTC 9 cut(s) 457, 769, 803, 1492, 1600, 1809, 1818, 1870, 1891
HpyCH4III ACNGT 4 cut(s) 992, 1163, 1764, 1883
HpyF10VI GCNNNNNNNGC 2 cut(s) 1310, 1787
HpyF3I CTNAG 5 cut(s) 5, 180, 267, 1537, 1706
Hsp92II CATG 9 cut(s) 35, 529, 563, 1028, 1078, 1127, 1141, 1424, 1871
Ksp22I TGATCA 1 cut(s) 22
Kzo9I GATC 5 cut(s) 22, 270, 426, 760, 1134
LmnI GCTCC 5 cut(s) 169, 862, 956, 1505, 1846
Lsp1109I GCAGC 6 cut(s) 101, 533, 1288, 1645, 1766, 1878
LweI GCATC 3 cut(s) 226, 1377, 1906
MaeI CTAG 2 cut(s) 186, 1308
MaeIII GTNAC 2 cut(s) 1223, 1620
MalI GATC 5 cut(s) 24, 272, 428, 762, 1136
MboI GATC 5 cut(s) 22, 270, 426, 760, 1134
MfeI CAATTG 1 cut(s) 608
MhlI GDGCHC 1 cut(s) 1315
MluCI AATT 3 cut(s) 13, 41, 608
MlyI GAGTC 2 cut(s) 41, 1555
Mph1103I ATGCAT 1 cut(s) 1143
MroXI GAANNNNTTC 2 cut(s) 883, 1275
MseI TTAA 5 cut(s) 108, 294, 899, 1043, 1392
MslI CAYNNNNRTG 5 cut(s) 490, 1128, 1146, 1482, 1573
MspA1I CMGCKG 1 cut(s) 1301
MspCI CTTAAG 1 cut(s) 1391
MspI CCGG 1 cut(s) 634
MspR9I CCNGG 2 cut(s) 635, 1747
MunI CAATTG 1 cut(s) 608
Mva1269I GAATGC 1 cut(s) 652
MvaI CCWGG 1 cut(s) 1747
MwoI GCNNNNNNNGC 2 cut(s) 1310, 1787
NciI CCSGG 1 cut(s) 635
NdeII GATC 5 cut(s) 22, 270, 426, 760, 1134
NlaIII CATG 9 cut(s) 35, 529, 563, 1028, 1078, 1127, 1141, 1424, 1871
NlaIV GGNNCC 4 cut(s) 165, 414, 802, 1848
NmuCI GTSAC 1 cut(s) 1620
NsiI ATGCAT 1 cut(s) 1143
NspI RCATGY 1 cut(s) 563
NspV TTCGAA 1 cut(s) 115
PceI AGGCCT 2 cut(s) 10, 1828
PciI ACATGT 1 cut(s) 559
PctI GAATGC 1 cut(s) 652
PdmI GAANNNNTTC 2 cut(s) 883, 1275
PfeI GAWTC 7 cut(s) 644, 830, 890, 907, 977, 1276, 1664
PkrI GCNGC 6 cut(s) 91, 523, 1303, 1635, 1756, 1893
PleI GAGTC 2 cut(s) 41, 1555
PpsI GAGTC 2 cut(s) 41, 1555
PscI ACATGT 1 cut(s) 559
Psp6I CCWGG 1 cut(s) 1745
PspEI GGTNACC 1 cut(s) 1223
PspGI CCWGG 1 cut(s) 1745
PspN4I GGNNCC 4 cut(s) 165, 414, 802, 1848
PspPI GGNCC 2 cut(s) 202, 737
PstI CTGCAG 1 cut(s) 1896
PvuII CAGCTG 1 cut(s) 1301
RsaI GTAC 3 cut(s) 1795, 1872, 1885
RsaNI GTAC 3 cut(s) 1794, 1871, 1884
RseI CAYNNNNRTG 5 cut(s) 490, 1128, 1146, 1482, 1573
SaqAI TTAA 5 cut(s) 108, 294, 899, 1043, 1392
SatI GCNGC 6 cut(s) 90, 522, 1302, 1634, 1755, 1892
Sau3AI GATC 5 cut(s) 22, 270, 426, 760, 1134
Sau96I GGNCC 2 cut(s) 202, 737
SchI GAGTC 2 cut(s) 41, 1555
ScrFI CCNGG 2 cut(s) 635, 1747
SduI GDGCHC 1 cut(s) 1315
SfaNI GCATC 3 cut(s) 226, 1377, 1906
SfcI CTRYAG 3 cut(s) 315, 1101, 1892
SfuI TTCGAA 1 cut(s) 115
SmiMI CAYNNNNRTG 5 cut(s) 490, 1128, 1146, 1482, 1573
SmlI CTYRAG 3 cut(s) 1314, 1391, 1430
SmoI CTYRAG 3 cut(s) 1314, 1391, 1430
SpeI ACTAGT 1 cut(s) 1307
Sse9I AATT 3 cut(s) 13, 41, 608
SseBI AGGCCT 2 cut(s) 10, 1828
SsiI CCGC 1 cut(s) 1590
SspMI CTAG 2 cut(s) 186, 1308
StuI AGGCCT 2 cut(s) 10, 1828
StyD4I CCNGG 2 cut(s) 633, 1745
StyI CCWWGG 3 cut(s) 338, 477, 804
TaaI ACNGT 4 cut(s) 992, 1163, 1764, 1883
TaqI TCGA 1 cut(s) 115
TaqII GACCGA 1 cut(s) 1794
TasI AATT 3 cut(s) 13, 41, 608
TatI WGTACW 1 cut(s) 1883
TfiI GAWTC 7 cut(s) 644, 830, 890, 907, 977, 1276, 1664
Tru1I TTAA 5 cut(s) 108, 294, 899, 1043, 1392
Tru9I TTAA 5 cut(s) 108, 294, 899, 1043, 1392
TscAI CASTG 3 cut(s) 280, 728, 772
TseFI GTSAC 1 cut(s) 1620
TseI GCWGC 6 cut(s) 89, 521, 1301, 1633, 1754, 1891
Tsp45I GTSAC 1 cut(s) 1620
TspDTI ATGAA 8 cut(s) 48, 474, 542, 636, 759, 1041, 1392, 1409
TspGWI ACGGA 2 cut(s) 808, 1558
TspRI CASTG 3 cut(s) 280, 728, 772
Vha464I CTTAAG 1 cut(s) 1391
XagI CCTNNNNNAGG 1 cut(s) 691
XceI RCATGY 1 cut(s) 563
XcmI CCANNNNNNNNNTGG 1 cut(s) 406
XmiI GTMKAC 1 cut(s) 572
XmnI GAANNNNTTC 2 cut(s) 883, 1275
XspI CTAG 2 cut(s) 186, 1308
Zsp2I ATGCAT 1 cut(s) 1143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.