Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0007440

Physical Location & Seq

Genomic Coordinates Forward (+)

2693027 .. 2699035

Gene Structure 6009 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG030200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGTTATGTTCATTCTTCTTTGTTCTTGTAAATTTTATGTTGCAGCCTGTTATATTTCTTCATGGGGGTCCAGGAGGTGGAACTTCCCCAAATAATCGAAGATTCTTTGATCCTGAGTTTTACAGAATCATCCTATTTGATCAGCGAGGTTCAGGGAAAAGTACTCCACATGCTTGCTTGGAAGAAAACACCACATGGGATCTCATTAGTGACATTGAAAAGCTCAGAGAACACCTGGAAATTCCAGAATGGCAGGTTTTTGGTGGGTCTTGGGGGAGTACCCTTGCCCTTGCATATAGCCAATCACACCCTGAGAAGGTTACTGGCATGGTCCTGAGAGGGATTTTTCTCTTAAGAAAGAAAGAGATTGATTGGTTTTATGAGGGTGGTGCTGCTGCCATATACCCTGATGCTTGGGAGCAGTTTCGTGATCTGATTCCGGAAAATGAGCGGGGAAGTTTTCTTGATGCTTATAGGAAGAGATTAAATTCCGATGATAAGGAAATACAATTTGCAGCTGCTAGAGCATGGACAATGTGGGAAATGATGACTGCACATCTCCTTCCAAATGACGAGAACATCAAGAGGGGGGAAGACGATATTTTTGCATTGGCATTTGCCAGGATTGAAAATCATTACTTTGTGAACAGAGGATTCTTTCCTTCAGATGCATACCTGTTAGATAACGTCGAAAAGATAAGGCATATAAAAACTACAATCGTACAGGGACGATATGATGTTTGCTGTCCCATGATGTCGGCGTGGGATCTCCATAAAGCATGGCCAGAAGCTGATCTCAAGGTGATTCAAGATGCAGGGCATTCTGCTAATGAACCAGGAATAGCTGCAGAGCTCGTGGCGGCAAATGAGAAGCTGAAACACATAAAAATTGGAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00330 map00330

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

299

Amino Acids

34.23

Weight (kDa)

5.5

Isoelectric Point (pI)

38.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	16 - 278	1.1e-32	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	17 - 278	2.9e-09	Alpha/beta hydrolase family
Hydrolase_4	PF12146	41 - 140	5.8e-08	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14260 AT2G14260 AT2G14260 AT2G14260
fragaria_vesca	FvH4_2g02550
malus_domestica	MD10G1115000.v1.1
prunus_persica	Prupe.8G157100_v2.0.a1 Prupe.8G157100_v2.0.a1
pyrus_communis	pycom05g10790 pycom10g09950 pycom15g16330
rosa_chinensis	RchiOBHm_Chr6g0246361
rosa_laevigata	RLG00000015261
rosa_multiflora	Rmu_co8135098.1_g000001 Rmu_sc0001066.1_g000006 Rmu_sc0008965.1_g000003
rosa_roxburghii	Rroxscaffold_7G00214650
rosa_rugosa	Rorug05G0520500
rosa_samantha	Rh6AG034700 Rh6BG029800 Rh6CG030200 Rh6CG067300 Rh6DG029100
rosa_wichuraiana	Rw6G002810 Rw6G002970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	244
AccB7I	CCANNNNNTGG	1 cut(s)	77
AccBSI	CCGCTC	1 cut(s)	451
AccIII	TCCGGA	1 cut(s)	439
AciI	CCGC	2 cut(s)	451, 860
AclWI	GGATC	3 cut(s)	104, 207, 774
AcoI	YGGCCR	1 cut(s)	782
AcsI	RAATTY	3 cut(s)	31, 240, 487
AcuI	CTGAAG	1 cut(s)	648
AfaI	GTAC	3 cut(s)	163, 280, 723
AfiI	CCNNNNNNNGG	2 cut(s)	77, 316
AflII	CTTAAG	1 cut(s)	352
AgsI	TTSAA	3 cut(s)	218, 629, 809
AjnI	CCWGG	4 cut(s)	70, 234, 620, 835
AluBI	AGCT	6 cut(s)	223, 518, 791, 845, 853, 874
AluI	AGCT	6 cut(s)	223, 518, 791, 845, 853, 874
Alw21I	GWGCWC	1 cut(s)	855
AlwI	GGATC	3 cut(s)	104, 207, 774
AlwNI	CAGNNNCTG	1 cut(s)	791
Aor13HI	TCCGGA	1 cut(s)	439
AoxI	GGCC	1 cut(s)	782
ApeKI	GCWGC	6 cut(s)	43, 392, 395, 515, 518, 845
ApoI	RAATTY	3 cut(s)	31, 240, 487
ArsI	GACNNNNNNTTYG	2 cut(s)	587, 619
AspS9I	GGNCC	2 cut(s)	68, 331
AsuHPI	GGTGA	1 cut(s)	814
AvaII	GGWCC	2 cut(s)	68, 331
BalI	TGGCCA	1 cut(s)	784
BanII	GRGCYC	1 cut(s)	855
BauI	CACGAG	1 cut(s)	854
BbsI	GAAGAC	1 cut(s)	600
Bbv12I	GWGCWC	1 cut(s)	855
BbvI	GCAGC	6 cut(s)	55, 379, 382, 505, 527, 832
BcgI	CGANNNNNNTGC	2 cut(s)	587, 621
BciT130I	CCWGG	4 cut(s)	72, 236, 622, 837
BclI	TGATCA	1 cut(s)	139
BfaI	CTAG	1 cut(s)	522
BfmI	CTRYAG	1 cut(s)	846
BfrI	CTTAAG	1 cut(s)	352
BfuAI	ACCTGC	1 cut(s)	244
BisI	GCNGC	7 cut(s)	44, 393, 396, 516, 519, 846, 861
BlsI	GCNGC	7 cut(s)	45, 394, 397, 517, 520, 847, 862
BmcAI	AGTACT	1 cut(s)	163
Bme1390I	CCNGG	4 cut(s)	72, 236, 622, 837
Bme18I	GGWCC	2 cut(s)	68, 331
BmgT120I	GGNCC	2 cut(s)	68, 331
BmiI	GGNNCC	1 cut(s)	69
BmrFI	CCNGG	4 cut(s)	72, 236, 622, 837
BmsI	GCATC	4 cut(s)	400, 457, 658, 802
BpiI	GAAGAC	1 cut(s)	600
BpuEI	CTTGAG	1 cut(s)	782
BsaWI	WCCGGW	1 cut(s)	439
Bsc4I	CCNNNNNNNGG	2 cut(s)	77, 316
Bse1I	ACTGG	1 cut(s)	328
BseAI	TCCGGA	1 cut(s)	439
BseBI	CCWGG	4 cut(s)	72, 236, 622, 837
BseGI	GGATG	1 cut(s)	129
BseLI	CCNNNNNNNGG	2 cut(s)	77, 316
BseMII	CTCAG	4 cut(s)	105, 238, 303, 326
BseNI	ACTGG	1 cut(s)	328
BseXI	GCAGC	6 cut(s)	55, 379, 382, 505, 527, 832
BsgI	GTGCAG	1 cut(s)	537
BshFI	GGCC	1 cut(s)	784
BsiHKAI	GWGCWC	1 cut(s)	855
BsiSI	CCGG	1 cut(s)	440
BslFI	GGGAC	2 cut(s)	732, 741
BslI	CCNNNNNNNGG	2 cut(s)	77, 316
BsmFI	GGGAC	2 cut(s)	732, 741
BsmI	GAATGC	1 cut(s)	820
BsnI	GGCC	1 cut(s)	784
Bsp1286I	GDGCHC	1 cut(s)	855
Bsp13I	TCCGGA	1 cut(s)	439
Bsp143I	GATC	6 cut(s)	109, 139, 199, 430, 766, 793
BspACI	CCGC	2 cut(s)	451, 860
BspANI	GGCC	1 cut(s)	784
BspCNI	CTCAG	4 cut(s)	106, 237, 304, 327
BspEI	TCCGGA	1 cut(s)	439
BspLI	GGNNCC	1 cut(s)	69
BspMAI	CTGCAG	1 cut(s)	850
BspMI	ACCTGC	1 cut(s)	244
BspPI	GGATC	3 cut(s)	104, 207, 774
BspTI	CTTAAG	1 cut(s)	352
BsrBI	CCGCTC	1 cut(s)	451
BsrI	ACTGG	1 cut(s)	328
BssMI	GATC	6 cut(s)	109, 139, 199, 430, 766, 793
BssSI	CACGAG	1 cut(s)	854
Bst2BI	CACGAG	1 cut(s)	854
Bst2UI	CCWGG	4 cut(s)	72, 236, 622, 837
Bst6I	CTCTTC	1 cut(s)	473
BstAFI	CTTAAG	1 cut(s)	352
BstC8I	GCNNGC	1 cut(s)	175
BstDEI	CTNAG	4 cut(s)	114, 224, 312, 335
BstF5I	GGATG	1 cut(s)	129
BstKTI	GATC	6 cut(s)	112, 142, 202, 433, 769, 796
BstMBI	GATC	6 cut(s)	109, 139, 199, 430, 766, 793
BstMWI	GCNNNNNNNGC	1 cut(s)	524
BstNI	CCWGG	4 cut(s)	72, 236, 622, 837
BstNSI	RCATGY	1 cut(s)	173
BstSCI	CCNGG	4 cut(s)	70, 234, 620, 835
BstSFI	CTRYAG	1 cut(s)	846
BstV1I	GCAGC	6 cut(s)	55, 379, 382, 505, 527, 832
BstV2I	GAAGAC	1 cut(s)	600
BstX2I	RGATCY	2 cut(s)	199, 766
BstYI	RGATCY	2 cut(s)	199, 766
BsuRI	GGCC	1 cut(s)	784
BtsCI	GGATG	1 cut(s)	129
BveI	ACCTGC	1 cut(s)	244
Cac8I	GCNNGC	1 cut(s)	175
CaiI	CAGNNNCTG	1 cut(s)	791
Cfr13I	GGNCC	2 cut(s)	68, 331
Csp6I	GTAC	3 cut(s)	162, 279, 722
CviAII	CATG	7 cut(s)	62, 170, 195, 328, 528, 751, 780
CviJI	RGCY	9 cut(s)	46, 223, 300, 518, 784, 791, 845, 853, 874
CviKI_1	RGCY	9 cut(s)	46, 223, 300, 518, 784, 791, 845, 853, 874
CviQI	GTAC	3 cut(s)	162, 279, 722
DdeI	CTNAG	4 cut(s)	114, 224, 312, 335
DpnI	GATC	6 cut(s)	111, 141, 201, 432, 768, 795
DpnII	GATC	6 cut(s)	109, 139, 199, 430, 766, 793
EaeI	YGGCCR	1 cut(s)	782
Eam1104I	CTCTTC	1 cut(s)	473
EarI	CTCTTC	1 cut(s)	473
Ecl136II	GAGCTC	1 cut(s)	853
Eco24I	GRGCYC	1 cut(s)	855
Eco47I	GGWCC	2 cut(s)	68, 331
Eco53kI	GAGCTC	1 cut(s)	853
Eco57I	CTGAAG	1 cut(s)	648
EcoICRI	GAGCTC	1 cut(s)	853
EcoRII	CCWGG	4 cut(s)	70, 234, 620, 835
EcoT22I	ATGCAT	1 cut(s)	673
EcoT38I	GRGCYC	1 cut(s)	855
FaeI	CATG	7 cut(s)	65, 173, 198, 331, 531, 754, 783
FaqI	GGGAC	2 cut(s)	732, 741
FatI	CATG	7 cut(s)	61, 169, 194, 327, 527, 750, 779
FauI	CCCGC	1 cut(s)	444
FbaI	TGATCA	1 cut(s)	139
Fnu4HI	GCNGC	7 cut(s)	44, 393, 396, 516, 519, 846, 861
FokI	GGATG	1 cut(s)	116
FriOI	GRGCYC	1 cut(s)	855
Fsp4HI	GCNGC	7 cut(s)	44, 393, 396, 516, 519, 846, 861
FspBI	CTAG	1 cut(s)	522
GluI	GCNGC	7 cut(s)	44, 393, 396, 516, 519, 846, 861
HaeIII	GGCC	1 cut(s)	784
HapII	CCGG	1 cut(s)	440
Hin1II	CATG	7 cut(s)	65, 173, 198, 331, 531, 754, 783
HinfI	GANTC	5 cut(s)	102, 126, 436, 654, 805
HpaII	CCGG	1 cut(s)	440
HphI	GGTGA	1 cut(s)	814
Hpy166II	GTNNAC	1 cut(s)	646
Hpy188I	TCNGA	4 cut(s)	227, 435, 493, 667
Hpy188III	TCNNGA	8 cut(s)	113, 245, 334, 428, 440, 464, 583, 809
Hpy8I	GTNNAC	1 cut(s)	646
Hpy99I	CGWCG	1 cut(s)	692
HpyAV	CCTTC	3 cut(s)	310, 572, 672
HpyCH4IV	ACGT	1 cut(s)	687
HpyCH4V	TGCA	8 cut(s)	43, 293, 515, 554, 608, 671, 815, 848
HpyF10VI	GCNNNNNNNGC	1 cut(s)	524
HpyF3I	CTNAG	4 cut(s)	114, 224, 312, 335
HpySE526I	ACGT	1 cut(s)	687
Hsp92II	CATG	7 cut(s)	65, 173, 198, 331, 531, 754, 783
Kpn2I	TCCGGA	1 cut(s)	439
Ksp22I	TGATCA	1 cut(s)	139
Kzo9I	GATC	6 cut(s)	109, 139, 199, 430, 766, 793
LmnI	GCTCC	2 cut(s)	418, 893
Lsp1109I	GCAGC	6 cut(s)	55, 379, 382, 505, 527, 832
LweI	GCATC	4 cut(s)	400, 457, 658, 802
MaeI	CTAG	1 cut(s)	522
MaeII	ACGT	1 cut(s)	687
MaeIII	GTNAC	2 cut(s)	209, 319
MalI	GATC	6 cut(s)	111, 141, 201, 432, 768, 795
MbiI	CCGCTC	1 cut(s)	451
MboI	GATC	6 cut(s)	109, 139, 199, 430, 766, 793
MboII	GAAGA	6 cut(s)	7, 50, 111, 194, 490, 605
MflI	RGATCY	2 cut(s)	199, 766
MhlI	GDGCHC	1 cut(s)	855
MlsI	TGGCCA	1 cut(s)	784
MluCI	AATT	5 cut(s)	31, 240, 487, 509, 888
MluNI	TGGCCA	1 cut(s)	784
MnlI	CCTC	6 cut(s)	68, 140, 332, 376, 579, 644
Mox20I	TGGCCA	1 cut(s)	784
Mph1103I	ATGCAT	1 cut(s)	673
MroI	TCCGGA	1 cut(s)	439
MscI	TGGCCA	1 cut(s)	784
MseI	TTAA	2 cut(s)	353, 485
Msp20I	TGGCCA	1 cut(s)	784
MspA1I	CMGCKG	1 cut(s)	518
MspCI	CTTAAG	1 cut(s)	352
MspI	CCGG	1 cut(s)	440
MspR9I	CCNGG	4 cut(s)	72, 236, 622, 837
Mva1269I	GAATGC	1 cut(s)	820
MvaI	CCWGG	4 cut(s)	72, 236, 622, 837
MwoI	GCNNNNNNNGC	1 cut(s)	524
NdeII	GATC	6 cut(s)	109, 139, 199, 430, 766, 793
NlaIII	CATG	7 cut(s)	65, 173, 198, 331, 531, 754, 783
NlaIV	GGNNCC	1 cut(s)	69
NmuCI	GTSAC	1 cut(s)	209
NsiI	ATGCAT	1 cut(s)	673
NspI	RCATGY	1 cut(s)	173
PctI	GAATGC	1 cut(s)	820
PfeI	GAWTC	5 cut(s)	102, 126, 436, 654, 805
PflMI	CCANNNNNTGG	1 cut(s)	77
PfoI	TCCNGGA	1 cut(s)	70
PkrI	GCNGC	7 cut(s)	45, 394, 397, 517, 520, 847, 862
Psp124BI	GAGCTC	1 cut(s)	855
Psp6I	CCWGG	4 cut(s)	70, 234, 620, 835
PspGI	CCWGG	4 cut(s)	70, 234, 620, 835
PspN4I	GGNNCC	1 cut(s)	69
PspPI	GGNCC	2 cut(s)	68, 331
PstI	CTGCAG	1 cut(s)	850
PstNI	CAGNNNCTG	1 cut(s)	791
PsuI	RGATCY	2 cut(s)	199, 766
PvuII	CAGCTG	1 cut(s)	518
RsaI	GTAC	3 cut(s)	163, 280, 723
RsaNI	GTAC	3 cut(s)	162, 279, 722
SacI	GAGCTC	1 cut(s)	855
SaqAI	TTAA	2 cut(s)	353, 485
SatI	GCNGC	7 cut(s)	44, 393, 396, 516, 519, 846, 861
Sau3AI	GATC	6 cut(s)	109, 139, 199, 430, 766, 793
Sau96I	GGNCC	2 cut(s)	68, 331
ScaI	AGTACT	1 cut(s)	163
ScrFI	CCNGG	4 cut(s)	72, 236, 622, 837
SduI	GDGCHC	1 cut(s)	855
SfaNI	GCATC	4 cut(s)	400, 457, 658, 802
SfcI	CTRYAG	1 cut(s)	846
SinI	GGWCC	2 cut(s)	68, 331
SmlI	CTYRAG	2 cut(s)	352, 797
SmoI	CTYRAG	2 cut(s)	352, 797
Sse9I	AATT	5 cut(s)	31, 240, 487, 509, 888
SsiI	CCGC	2 cut(s)	451, 860
SspMI	CTAG	1 cut(s)	522
SstI	GAGCTC	1 cut(s)	855
StyD4I	CCNGG	4 cut(s)	70, 234, 620, 835
TaiI	ACGT	1 cut(s)	690
TaqI	TCGA	2 cut(s)	97, 690
TasI	AATT	5 cut(s)	31, 240, 487, 509, 888
TatI	WGTACW	1 cut(s)	161
TauI	GCSGC	1 cut(s)	863
TfiI	GAWTC	5 cut(s)	102, 126, 436, 654, 805
Tru1I	TTAA	2 cut(s)	353, 485
Tru9I	TTAA	2 cut(s)	353, 485
TseFI	GTSAC	1 cut(s)	209
TseI	GCWGC	6 cut(s)	43, 392, 395, 515, 518, 845
Tsp45I	GTSAC	1 cut(s)	209
TspDTI	ATGAA	2 cut(s)	50, 846
Van91I	CCANNNNNTGG	1 cut(s)	77
Vha464I	CTTAAG	1 cut(s)	352
VpaK11BI	GGWCC	2 cut(s)	68, 331
XapI	RAATTY	3 cut(s)	31, 240, 487
XceI	RCATGY	1 cut(s)	173
XspI	CTAG	1 cut(s)	522
ZrmI	AGTACT	1 cut(s)	163
Zsp2I	ATGCAT	1 cut(s)	673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.