Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0007440

Physical Location & Seq

Genomic Coordinates Forward (+)

4436919 .. 4444013

Gene Structure 7095 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG029800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGACTAGGTTAGTGACCTTGGGATTCTCCCCAAATTCCTTTTCTTCCCCACCCTTCCTTCCCTTAATCTCCACCACCTCCTCCCATTTTCAACTCCCTTCCTCCTTGTCCTCCAAGCTCACTGCTTCAGGGAAGAGTAATTTGGTCCTACGTGGTTGCAAGACCGAGACGAAGCTACGAGATTCCATGGAATCGGAGAAGGAATTGCCGGAGTTCAATAGAGAGCTGTATCCGAGCATTGACCCTTACAGCTCCGGCTTTCTCAAGGTCTCGGATATTCACTCAATCTATTGGGAGCAGTCCGGAAATCCCAACGGCCATCCTGTTATATTTCTTCATGGGGGTCCAGGAGGTGGAACTTCCCCAAATAATCGAAGATTCTTTGATCCTGAGTTTTACAGAATCATCCTATTTGATCAGCGAGGTTCCGGGAAAAGTACTCCACATGCTTGCTTGGAAGAAAACACCACATGGGATCTCATTGGTGACATTGAAAAGCTTAGAGAACACCTGGAAATTCCAGAATGGCAGGTTTTTGGTGGATCTTGGGGGAGTACACTAGCCCTTGCATATAGCCAATCACACCCTGAGAAGGTTACTGGCATGGTCCTGAGAGGGATTTTTCTCTTAAGAAAGAAAGAGATTGATTGGTTTTATGAGGGTGGTGCTGCTGCCATATACCCTGATGCTTGGGAGCAATTTCGTGATCTGATTCCAGAAAATGAGCGGGGAAGTTTTGTTGATGCTTATAGGAAGAGATTAAACTCCGATGATAAGGAAATACAAGTAAGGCTTGCTTGGTTTGGGGCATATGCTATTTATGTATTATCAACATTTTTCTTAACTTCGCAGTGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00330 map00330

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

286

Amino Acids

32.38

Weight (kDa)

5.71

Isoelectric Point (pI)

43.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	108 - 257	1.2e-25	alpha/beta hydrolase fold
Hydrolase_4	PF12146	133 - 217	1.4e-07	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14260 AT2G14260 AT2G14260 AT2G14260
fragaria_vesca	FvH4_2g02550
malus_domestica	MD10G1115000.v1.1
prunus_persica	Prupe.8G157100_v2.0.a1 Prupe.8G157100_v2.0.a1
pyrus_communis	pycom05g10790 pycom10g09950 pycom15g16330
rosa_chinensis	RchiOBHm_Chr6g0246361
rosa_laevigata	RLG00000015261
rosa_multiflora	Rmu_co8135098.1_g000001 Rmu_sc0001066.1_g000006 Rmu_sc0008965.1_g000003
rosa_roxburghii	Rroxscaffold_7G00214650
rosa_rugosa	Rorug05G0520500
rosa_samantha	Rh6AG034700 Rh6BG029800 Rh6CG030200 Rh6CG067300 Rh6DG029100
rosa_wichuraiana	Rw6G002810 Rw6G002970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	520
AccB7I	CCANNNNNTGG	1 cut(s)	353
AccBSI	CCGCTC	1 cut(s)	727
AccIII	TCCGGA	1 cut(s)	302
AciI	CCGC	1 cut(s)	727
AclWI	GGATC	3 cut(s)	380, 483, 550
AcoI	YGGCCR	1 cut(s)	316
AcsI	RAATTY	2 cut(s)	34, 516
AcuI	CTGAAG	1 cut(s)	111
AfaI	GTAC	2 cut(s)	439, 556
AfiI	CCNNNNNNNGG	2 cut(s)	353, 592
AflII	CTTAAG	1 cut(s)	628
AgsI	TTSAA	3 cut(s)	92, 217, 494
AjnI	CCWGG	2 cut(s)	346, 510
AjuI	GAANNNNNNNTTGG	4 cut(s)	25, 57, 125, 157
AluBI	AGCT	5 cut(s)	118, 175, 226, 252, 499
AluI	AGCT	5 cut(s)	118, 175, 226, 252, 499
Alw26I	GTCTC	2 cut(s)	161, 274
AlwI	GGATC	3 cut(s)	380, 483, 550
Aor13HI	TCCGGA	1 cut(s)	302
AoxI	GGCC	1 cut(s)	316
ApeKI	GCWGC	2 cut(s)	668, 671
ApoI	RAATTY	2 cut(s)	34, 516
AspS9I	GGNCC	3 cut(s)	145, 344, 607
AsuC2I	CCSGG	1 cut(s)	430
AsuHPI	GGTGA	1 cut(s)	497
AvaII	GGWCC	3 cut(s)	145, 344, 607
BbvI	GCAGC	2 cut(s)	655, 658
BccI	CCATC	1 cut(s)	327
BceAI	ACGGC	1 cut(s)	331
BciT130I	CCWGG	2 cut(s)	348, 512
BciVI	GTATCC	1 cut(s)	240
BclI	TGATCA	1 cut(s)	415
BcnI	CCSGG	1 cut(s)	430
BcoDI	GTCTC	2 cut(s)	161, 274
BfaI	CTAG	2 cut(s)	6, 560
BfrI	CTTAAG	1 cut(s)	628
BfuAI	ACCTGC	1 cut(s)	520
BfuI	GTATCC	1 cut(s)	240
BisI	GCNGC	2 cut(s)	669, 672
BlsI	GCNGC	2 cut(s)	670, 673
BmcAI	AGTACT	1 cut(s)	439
Bme1390I	CCNGG	3 cut(s)	348, 430, 512
Bme18I	GGWCC	3 cut(s)	145, 344, 607
BmgT120I	GGNCC	3 cut(s)	145, 344, 607
BmiI	GGNNCC	2 cut(s)	345, 427
BmrFI	CCNGG	3 cut(s)	348, 430, 512
BmsI	GCATC	2 cut(s)	676, 733
BpuEI	CTTGAG	1 cut(s)	248
BpuMI	CCSGG	1 cut(s)	430
BsaAI	YACGTR	1 cut(s)	152
BsaI	GGTCTC	1 cut(s)	274
BsaJI	CCNNGG	2 cut(s)	18, 186
BsaWI	WCCGGW	1 cut(s)	302
Bsc4I	CCNNNNNNNGG	2 cut(s)	353, 592
Bse1I	ACTGG	1 cut(s)	604
BseAI	TCCGGA	1 cut(s)	302
BseBI	CCWGG	2 cut(s)	348, 512
BseDI	CCNNGG	2 cut(s)	18, 186
BseGI	GGATG	2 cut(s)	319, 405
BseLI	CCNNNNNNNGG	2 cut(s)	353, 592
BseMII	CTCAG	3 cut(s)	381, 579, 602
BseNI	ACTGG	1 cut(s)	604
BseRI	GAGGAG	1 cut(s)	70
BseXI	GCAGC	2 cut(s)	655, 658
BshFI	GGCC	1 cut(s)	318
BsiSI	CCGG	4 cut(s)	209, 255, 303, 429
BslI	CCNNNNNNNGG	2 cut(s)	353, 592
BsmAI	GTCTC	2 cut(s)	161, 274
BsmBI	CGTCTC	1 cut(s)	161
BsnI	GGCC	1 cut(s)	318
Bso31I	GGTCTC	1 cut(s)	274
Bsp13I	TCCGGA	1 cut(s)	302
Bsp143I	GATC	5 cut(s)	385, 415, 475, 542, 706
Bsp19I	CCATGG	1 cut(s)	186
BspACI	CCGC	1 cut(s)	727
BspANI	GGCC	1 cut(s)	318
BspCNI	CTCAG	3 cut(s)	382, 580, 603
BspEI	TCCGGA	1 cut(s)	302
BspLI	GGNNCC	2 cut(s)	345, 427
BspMI	ACCTGC	1 cut(s)	520
BspPI	GGATC	3 cut(s)	380, 483, 550
BspTI	CTTAAG	1 cut(s)	628
BspTNI	GGTCTC	1 cut(s)	274
BsrBI	CCGCTC	1 cut(s)	727
BsrI	ACTGG	1 cut(s)	604
BssECI	CCNNGG	2 cut(s)	18, 186
BssMI	GATC	5 cut(s)	385, 415, 475, 542, 706
BssT1I	CCWWGG	2 cut(s)	18, 186
Bst2UI	CCWGG	2 cut(s)	348, 512
Bst6I	CTCTTC	2 cut(s)	128, 749
BstAFI	CTTAAG	1 cut(s)	628
BstBAI	YACGTR	1 cut(s)	152
BstC8I	GCNNGC	2 cut(s)	451, 795
BstDEI	CTNAG	4 cut(s)	390, 500, 588, 611
BstDSI	CCRYGG	1 cut(s)	186
BstF5I	GGATG	2 cut(s)	319, 405
BstKTI	GATC	5 cut(s)	388, 418, 478, 545, 709
BstMAI	GTCTC	2 cut(s)	161, 274
BstMBI	GATC	5 cut(s)	385, 415, 475, 542, 706
BstNI	CCWGG	2 cut(s)	348, 512
BstNSI	RCATGY	1 cut(s)	449
BstSCI	CCNGG	3 cut(s)	346, 428, 510
BstV1I	GCAGC	2 cut(s)	655, 658
BstX2I	RGATCY	2 cut(s)	475, 542
BstYI	RGATCY	2 cut(s)	475, 542
BsuI	GTATCC	1 cut(s)	240
BsuRI	GGCC	1 cut(s)	318
BtgI	CCRYGG	1 cut(s)	186
BtsCI	GGATG	2 cut(s)	319, 405
BtsI	GCAGTG	2 cut(s)	120, 857
BtsIMutI	CAGTG	2 cut(s)	120, 857
BveI	ACCTGC	1 cut(s)	520
Cac8I	GCNNGC	2 cut(s)	451, 795
Cfr13I	GGNCC	3 cut(s)	145, 344, 607
Csp6I	GTAC	2 cut(s)	438, 555
CviAII	CATG	5 cut(s)	187, 338, 446, 471, 604
CviQI	GTAC	2 cut(s)	438, 555
DdeI	CTNAG	4 cut(s)	390, 500, 588, 611
DpnI	GATC	5 cut(s)	387, 417, 477, 544, 708
DpnII	GATC	5 cut(s)	385, 415, 475, 542, 706
EaeI	YGGCCR	1 cut(s)	316
Eam1104I	CTCTTC	2 cut(s)	128, 749
EarI	CTCTTC	2 cut(s)	128, 749
Eco130I	CCWWGG	2 cut(s)	18, 186
Eco31I	GGTCTC	1 cut(s)	274
Eco47I	GGWCC	3 cut(s)	145, 344, 607
Eco57I	CTGAAG	1 cut(s)	111
EcoRII	CCWGG	2 cut(s)	346, 510
EcoT14I	CCWWGG	2 cut(s)	18, 186
ErhI	CCWWGG	2 cut(s)	18, 186
Esp3I	CGTCTC	1 cut(s)	161
FaeI	CATG	5 cut(s)	190, 341, 449, 474, 607
FalI	AAGNNNNNCTT	4 cut(s)	777, 809, 781, 813
FatI	CATG	5 cut(s)	186, 337, 445, 470, 603
FauI	CCCGC	1 cut(s)	720
FauNDI	CATATG	1 cut(s)	811
FbaI	TGATCA	1 cut(s)	415
Fnu4HI	GCNGC	2 cut(s)	669, 672
FokI	GGATG	2 cut(s)	306, 392
Fsp4HI	GCNGC	2 cut(s)	669, 672
FspBI	CTAG	2 cut(s)	6, 560
GluI	GCNGC	2 cut(s)	669, 672
HaeIII	GGCC	1 cut(s)	318
HapII	CCGG	4 cut(s)	209, 255, 303, 429
Hin1II	CATG	5 cut(s)	190, 341, 449, 474, 607
HindIII	AAGCTT	1 cut(s)	497
HinfI	GANTC	6 cut(s)	24, 182, 191, 378, 402, 712
HpaII	CCGG	4 cut(s)	209, 255, 303, 429
HphI	GGTGA	1 cut(s)	497
Hpy166II	GTNNAC	1 cut(s)	557
Hpy188I	TCNGA	5 cut(s)	196, 234, 274, 711, 769
Hpy188III	TCNNGA	6 cut(s)	303, 389, 521, 610, 704, 716
Hpy8I	GTNNAC	1 cut(s)	557
HpyAV	CCTTC	5 cut(s)	64, 68, 108, 193, 586
HpyCH4IV	ACGT	1 cut(s)	151
HpyCH4V	TGCA	2 cut(s)	159, 569
HpyF3I	CTNAG	4 cut(s)	390, 500, 588, 611
HpySE526I	ACGT	1 cut(s)	151
Hsp92II	CATG	5 cut(s)	190, 341, 449, 474, 607
Kpn2I	TCCGGA	1 cut(s)	302
Ksp22I	TGATCA	1 cut(s)	415
Kzo9I	GATC	5 cut(s)	385, 415, 475, 542, 706
LmnI	GCTCC	3 cut(s)	257, 295, 694
Lsp1109I	GCAGC	2 cut(s)	655, 658
LweI	GCATC	2 cut(s)	676, 733
MaeI	CTAG	2 cut(s)	6, 560
MaeII	ACGT	1 cut(s)	151
MaeIII	GTNAC	3 cut(s)	13, 485, 595
MalI	GATC	5 cut(s)	387, 417, 477, 544, 708
MbiI	CCGCTC	1 cut(s)	727
MboI	GATC	5 cut(s)	385, 415, 475, 542, 706
MboII	GAAGA	6 cut(s)	36, 145, 326, 387, 470, 766
MflI	RGATCY	2 cut(s)	475, 542
MluCI	AATT	5 cut(s)	34, 139, 203, 516, 698
MnlI	CCTC	8 cut(s)	88, 91, 112, 121, 344, 416, 608, 652
MroI	TCCGGA	1 cut(s)	302
MseI	TTAA	4 cut(s)	65, 629, 761, 842
MspCI	CTTAAG	1 cut(s)	628
MspI	CCGG	4 cut(s)	209, 255, 303, 429
MspR9I	CCNGG	3 cut(s)	348, 430, 512
MvaI	CCWGG	2 cut(s)	348, 512
NciI	CCSGG	1 cut(s)	430
NcoI	CCATGG	1 cut(s)	186
NdeI	CATATG	1 cut(s)	811
NdeII	GATC	5 cut(s)	385, 415, 475, 542, 706
NlaIII	CATG	5 cut(s)	190, 341, 449, 474, 607
NlaIV	GGNNCC	2 cut(s)	345, 427
NmuCI	GTSAC	2 cut(s)	13, 485
NspI	RCATGY	1 cut(s)	449
PfeI	GAWTC	6 cut(s)	24, 182, 191, 378, 402, 712
PflMI	CCANNNNNTGG	1 cut(s)	353
PfoI	TCCNGGA	2 cut(s)	346, 428
PkrI	GCNGC	2 cut(s)	670, 673
Ppu21I	YACGTR	1 cut(s)	152
Psp6I	CCWGG	2 cut(s)	346, 510
PspGI	CCWGG	2 cut(s)	346, 510
PspN4I	GGNNCC	2 cut(s)	345, 427
PspPI	GGNCC	3 cut(s)	145, 344, 607
PsuI	RGATCY	2 cut(s)	475, 542
RsaI	GTAC	2 cut(s)	439, 556
RsaNI	GTAC	2 cut(s)	438, 555
SaqAI	TTAA	4 cut(s)	65, 629, 761, 842
SatI	GCNGC	2 cut(s)	669, 672
Sau3AI	GATC	5 cut(s)	385, 415, 475, 542, 706
Sau96I	GGNCC	3 cut(s)	145, 344, 607
ScaI	AGTACT	1 cut(s)	439
ScrFI	CCNGG	3 cut(s)	348, 430, 512
SfaNI	GCATC	2 cut(s)	676, 733
SinI	GGWCC	3 cut(s)	145, 344, 607
SmlI	CTYRAG	2 cut(s)	263, 628
SmoI	CTYRAG	2 cut(s)	263, 628
Sse9I	AATT	5 cut(s)	34, 139, 203, 516, 698
SsiI	CCGC	1 cut(s)	727
SspMI	CTAG	2 cut(s)	6, 560
StyD4I	CCNGG	3 cut(s)	346, 428, 510
StyI	CCWWGG	2 cut(s)	18, 186
TaiI	ACGT	1 cut(s)	154
TaqI	TCGA	1 cut(s)	373
TaqII	GACCGA	1 cut(s)	179
TasI	AATT	5 cut(s)	34, 139, 203, 516, 698
TatI	WGTACW	2 cut(s)	437, 554
TfiI	GAWTC	6 cut(s)	24, 182, 191, 378, 402, 712
Tru1I	TTAA	4 cut(s)	65, 629, 761, 842
Tru9I	TTAA	4 cut(s)	65, 629, 761, 842
TscAI	CASTG	2 cut(s)	127, 857
TseFI	GTSAC	2 cut(s)	13, 485
TseI	GCWGC	2 cut(s)	668, 671
Tsp45I	GTSAC	2 cut(s)	13, 485
TspDTI	ATGAA	1 cut(s)	326
TspRI	CASTG	2 cut(s)	127, 857
Van91I	CCANNNNNTGG	1 cut(s)	353
Vha464I	CTTAAG	1 cut(s)	628
VpaK11BI	GGWCC	3 cut(s)	145, 344, 607
XapI	RAATTY	2 cut(s)	34, 516
XceI	RCATGY	1 cut(s)	449
XspI	CTAG	2 cut(s)	6, 560
ZrmI	AGTACT	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.