Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0007440

Physical Location & Seq

Genomic Coordinates Reverse (-)

13204004 .. 13204801

Gene Structure 798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g09950.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGATCGGATTGGGCACCTCCTTGGGAAAAGCGTTAAGTCCCGATTCCTATTTTTTGCCCTCCCTCCCCCTCACTCCCACCACCATCTCCACCTTCTCACTTTCCTCTCTCTCCTTCTCCTCCAACAACCTCACTGGGAAGAGGAATTCCCGGAATTCAGTTTTGCGCCGGCAGAGTGCGGGCTTCGAGAGCGAGCCGGAACTAACGAGCGATTCGATGGAATCGGATAAGGAACTTCCCGAGTTTAACAGGAACCTGTATCCGAATATCGAGCCCTACAGTTCCGGGTTTCTTAAGGTTTCCGATATTCACACAATCTATTGGGAGCAGTCTGGAAATCCCGACGGCCATCCTGTAGTTTTTCTTCATGGAGGTCCAGGAGGAGGAACTTCACCAAGTAATCGAAGATTCTTCGATCGATCTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00330 map00330

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

143

Amino Acids

15.55

Weight (kDa)

5.87

Isoelectric Point (pI)

72.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14260 AT2G14260 AT2G14260 AT2G14260
fragaria_vesca	FvH4_2g02550
malus_domestica	MD10G1115000.v1.1
prunus_persica	Prupe.8G157100_v2.0.a1 Prupe.8G157100_v2.0.a1
pyrus_communis	pycom05g10790 pycom10g09950 pycom15g16330
rosa_chinensis	RchiOBHm_Chr6g0246361
rosa_laevigata	RLG00000015261
rosa_multiflora	Rmu_co8135098.1_g000001 Rmu_sc0001066.1_g000006 Rmu_sc0008965.1_g000003
rosa_roxburghii	Rroxscaffold_7G00214650
rosa_rugosa	Rorug05G0520500
rosa_samantha	Rh6AG034700 Rh6BG029800 Rh6CG030200 Rh6CG067300 Rh6DG029100
rosa_wichuraiana	Rw6G002810 Rw6G002970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	14
AciI	CCGC	1 cut(s)	179
AcoI	YGGCCR	1 cut(s)	346
AcsI	RAATTY	2 cut(s)	145, 154
AfiI	CCNNNNNNNGG	1 cut(s)	383
AflII	CTTAAG	1 cut(s)	293
AjnI	CCWGG	1 cut(s)	376
Ama87I	CYCGRG	1 cut(s)	239
AoxI	GGCC	1 cut(s)	346
ApoI	RAATTY	2 cut(s)	145, 154
AspLEI	GCGC	1 cut(s)	168
AspS9I	GGNCC	1 cut(s)	374
AsuC2I	CCSGG	2 cut(s)	151, 286
AsuHPI	GGTGA	1 cut(s)	384
AvaI	CYCGRG	1 cut(s)	239
AvaII	GGWCC	1 cut(s)	374
BaeGI	GKGCMC	1 cut(s)	17
BanI	GGYRCC	1 cut(s)	14
BanII	GRGCYC	1 cut(s)	276
BarI	GAAGNNNNNNTAC	2 cut(s)	348, 380
BccI	CCATC	3 cut(s)	92, 211, 357
BceAI	ACGGC	1 cut(s)	361
BciT130I	CCWGG	1 cut(s)	378
BciVI	GTATCC	1 cut(s)	270
BcnI	CCSGG	2 cut(s)	151, 286
BfmI	CTRYAG	2 cut(s)	277, 354
BfrI	CTTAAG	1 cut(s)	293
BfuI	GTATCC	1 cut(s)	270
Bme1390I	CCNGG	3 cut(s)	151, 286, 378
Bme18I	GGWCC	1 cut(s)	374
BmeT110I	CYCGRG	1 cut(s)	239
BmgT120I	GGNCC	1 cut(s)	374
BmiI	GGNNCC	2 cut(s)	16, 254
BmrFI	CCNGG	3 cut(s)	151, 286, 378
BmrI	ACTGGG	1 cut(s)	144
BmuI	ACTGGG	1 cut(s)	144
BpuMI	CCSGG	2 cut(s)	151, 286
Bsa29I	ATCGAT	1 cut(s)	418
BsaJI	CCNNGG	1 cut(s)	21
Bsc4I	CCNNNNNNNGG	1 cut(s)	383
Bse118I	RCCGGY	1 cut(s)	168
Bse1I	ACTGG	1 cut(s)	139
BseBI	CCWGG	1 cut(s)	378
BseCI	ATCGAT	1 cut(s)	418
BseDI	CCNNGG	1 cut(s)	21
BseGI	GGATG	1 cut(s)	349
BseLI	CCNNNNNNNGG	1 cut(s)	383
BseNI	ACTGG	1 cut(s)	139
BseRI	GAGGAG	2 cut(s)	109, 396
BseSI	GKGCMC	1 cut(s)	17
Bsh1285I	CGRYCG	1 cut(s)	418
BshFI	GGCC	1 cut(s)	348
BshNI	GGYRCC	1 cut(s)	14
BshVI	ATCGAT	1 cut(s)	418
BsiEI	CGRYCG	1 cut(s)	418
BsiHKCI	CYCGRG	1 cut(s)	239
BsiSI	CCGG	4 cut(s)	151, 169, 197, 285
BslFI	GGGAC	1 cut(s)	24
BslI	CCNNNNNNNGG	1 cut(s)	383
BsmFI	GGGAC	1 cut(s)	24
BsnI	GGCC	1 cut(s)	348
BsoBI	CYCGRG	1 cut(s)	239
Bsp1286I	GDGCHC	2 cut(s)	17, 276
Bsp143I	GATC	3 cut(s)	3, 415, 419
BspACI	CCGC	1 cut(s)	179
BspANI	GGCC	1 cut(s)	348
BspDI	ATCGAT	1 cut(s)	418
BspLI	GGNNCC	2 cut(s)	16, 254
BspT107I	GGYRCC	1 cut(s)	14
BspTI	CTTAAG	1 cut(s)	293
BsrFI	RCCGGY	1 cut(s)	168
BsrI	ACTGG	1 cut(s)	139
BssAI	RCCGGY	1 cut(s)	168
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	3 cut(s)	3, 415, 419
BssT1I	CCWWGG	1 cut(s)	21
Bst2UI	CCWGG	1 cut(s)	378
Bst4CI	ACNGT	1 cut(s)	281
Bst6I	CTCTTC	1 cut(s)	134
BstAFI	CTTAAG	1 cut(s)	293
BstC8I	GCNNGC	3 cut(s)	170, 181, 194
BstDEI	CTNAG	1 cut(s)	423
BstF5I	GGATG	1 cut(s)	349
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	3 cut(s)	6, 418, 422
BstMBI	GATC	3 cut(s)	3, 415, 419
BstMCI	CGRYCG	1 cut(s)	418
BstMWI	GCNNNNNNNGC	1 cut(s)	189
BstNI	CCWGG	1 cut(s)	378
BstSCI	CCNGG	3 cut(s)	149, 284, 376
BstSFI	CTRYAG	2 cut(s)	277, 354
BstSLI	GKGCMC	1 cut(s)	17
Bsu15I	ATCGAT	1 cut(s)	418
BsuI	GTATCC	1 cut(s)	270
BsuRI	GGCC	1 cut(s)	348
BsuTUI	ATCGAT	1 cut(s)	418
BtsCI	GGATG	1 cut(s)	349
BtsIMutI	CAGTG	1 cut(s)	132
Cac8I	GCNNGC	3 cut(s)	170, 181, 194
CfoI	GCGC	1 cut(s)	168
Cfr10I	RCCGGY	1 cut(s)	168
Cfr13I	GGNCC	1 cut(s)	374
ClaI	ATCGAT	1 cut(s)	418
CviAII	CATG	1 cut(s)	368
CviJI	RGCY	4 cut(s)	183, 196, 274, 348
CviKI_1	RGCY	4 cut(s)	183, 196, 274, 348
DdeI	CTNAG	1 cut(s)	423
DpnI	GATC	3 cut(s)	5, 417, 421
DpnII	GATC	3 cut(s)	3, 415, 419
EaeI	YGGCCR	1 cut(s)	346
Eam1104I	CTCTTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	134
Eco130I	CCWWGG	1 cut(s)	21
Eco24I	GRGCYC	1 cut(s)	276
Eco47I	GGWCC	1 cut(s)	374
Eco88I	CYCGRG	1 cut(s)	239
EcoRI	GAATTC	2 cut(s)	145, 154
EcoRII	CCWGG	1 cut(s)	376
EcoT14I	CCWWGG	1 cut(s)	21
EcoT38I	GRGCYC	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	21
FaeI	CATG	1 cut(s)	371
FaiI	YATR	1 cut(s)	369
FaqI	GGGAC	1 cut(s)	24
FatI	CATG	1 cut(s)	367
FauI	CCCGC	1 cut(s)	172
FokI	GGATG	1 cut(s)	336
FriOI	GRGCYC	1 cut(s)	276
GlaI	GCGC	1 cut(s)	167
HaeIII	GGCC	1 cut(s)	348
HapII	CCGG	4 cut(s)	151, 169, 197, 285
HhaI	GCGC	1 cut(s)	168
Hin1II	CATG	1 cut(s)	371
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HinfI	GANTC	4 cut(s)	44, 212, 221, 408
HpaII	CCGG	4 cut(s)	151, 169, 197, 285
HphI	GGTGA	1 cut(s)	384
Hpy188I	TCNGA	4 cut(s)	8, 226, 264, 304
Hpy188III	TCNNGA	5 cut(s)	41, 187, 239, 333, 341
Hpy99I	CGWCG	1 cut(s)	347
HpyAV	CCTTC	2 cut(s)	103, 124
HpyCH4III	ACNGT	1 cut(s)	281
HpyF10VI	GCNNNNNNNGC	1 cut(s)	189
HpyF3I	CTNAG	1 cut(s)	423
Hsp92II	CATG	1 cut(s)	371
HspAI	GCGC	1 cut(s)	166
KroI	GCCGGC	1 cut(s)	168
KroNI	GCCGGC	1 cut(s)	170
Kzo9I	GATC	3 cut(s)	3, 415, 419
LmnI	GCTCC	1 cut(s)	325
MalI	GATC	3 cut(s)	5, 417, 421
MboI	GATC	3 cut(s)	3, 415, 419
MboII	GAAGA	4 cut(s)	151, 356, 403, 417
MhlI	GDGCHC	2 cut(s)	17, 276
MluCI	AATT	2 cut(s)	145, 154
MmeI	TCCRAC	1 cut(s)	147
MroNI	GCCGGC	1 cut(s)	168
MseI	TTAA	3 cut(s)	35, 246, 294
MspCI	CTTAAG	1 cut(s)	293
MspI	CCGG	4 cut(s)	151, 169, 197, 285
MspR9I	CCNGG	3 cut(s)	151, 286, 378
MvaI	CCWGG	1 cut(s)	378
MwoI	GCNNNNNNNGC	1 cut(s)	189
NaeI	GCCGGC	1 cut(s)	170
NciI	CCSGG	2 cut(s)	151, 286
NdeII	GATC	3 cut(s)	3, 415, 419
NgoMIV	GCCGGC	1 cut(s)	168
NlaIII	CATG	1 cut(s)	371
NlaIV	GGNNCC	2 cut(s)	16, 254
PcsI	WCGNNNNNNNCGW	1 cut(s)	212
PdiI	GCCGGC	1 cut(s)	170
PfeI	GAWTC	4 cut(s)	44, 212, 221, 408
PfoI	TCCNGGA	2 cut(s)	149, 376
Ple19I	CGATCG	1 cut(s)	418
Psp6I	CCWGG	1 cut(s)	376
PspGI	CCWGG	1 cut(s)	376
PspN4I	GGNNCC	2 cut(s)	16, 254
PspPI	GGNCC	1 cut(s)	374
PvuI	CGATCG	1 cut(s)	418
SaqAI	TTAA	3 cut(s)	35, 246, 294
Sau3AI	GATC	3 cut(s)	3, 415, 419
Sau96I	GGNCC	1 cut(s)	374
ScrFI	CCNGG	3 cut(s)	151, 286, 378
SduI	GDGCHC	2 cut(s)	17, 276
SetI	ASST	6 cut(s)	20, 95, 132, 258, 300, 376
SfcI	CTRYAG	2 cut(s)	277, 354
SinI	GGWCC	1 cut(s)	374
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
Sse9I	AATT	2 cut(s)	145, 154
SsiI	CCGC	1 cut(s)	179
StyD4I	CCNGG	3 cut(s)	149, 284, 376
StyI	CCWWGG	1 cut(s)	21
TaaI	ACNGT	1 cut(s)	281
TaqI	TCGA	6 cut(s)	186, 215, 270, 403, 414, 418
TasI	AATT	2 cut(s)	145, 154
TfiI	GAWTC	4 cut(s)	44, 212, 221, 408
Tru1I	TTAA	3 cut(s)	35, 246, 294
Tru9I	TTAA	3 cut(s)	35, 246, 294
TscAI	CASTG	1 cut(s)	139
TspDTI	ATGAA	1 cut(s)	356
TspRI	CASTG	1 cut(s)	139
Vha464I	CTTAAG	1 cut(s)	293
VpaK11BI	GGWCC	1 cut(s)	374
XapI	RAATTY	2 cut(s)	145, 154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.