Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0007440

Physical Location & Seq

Genomic Coordinates Reverse (-)

63761588 .. 63766613

Gene Structure 5026 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015261

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGACTAGGTTAGTGACCTTGGGATTCTCCCCAATTTCCTTTTCTTCCCCACCCTTCCTTCCCTTAATCTCCACCACCTCCTCCCATTTTCAACTCCCTTCCTCCTTCTCCTTCTCCTTGTCCTCCAAGCTCACTGCATCAGGGAAGAGTAATTTGGTTCTACGTGGTTGCAAGACTGAGACGAAGCTACGAGATTCGATGGAATCGGAGAAGGAATTGCCGGAATTCAATAGAGAGCTGTATCCGAGCATTGAGCCTTACAGCTCCGGCTTTCTCAAGGTTTCGGATATTCACTCTATCTATTGGGAGCAGTCCGGAAATCCCAACGGCCATCCTGTTATATTTCTTCATGGGGGTCCAGGAGGTGGAACTTCCCCAAATAATCGAAGATTCTTTGATCCTGAGTTTTACAGAATCATCCTATTTGATCAGCGAGGTTCAGGGAAAAGTACTCCACATGCTTGCTTGGAAGAAAACACCACATGGGATCTCATTGGTGACATTGAAAAGCTCAGAGAACACCTGGAAATTCCAGAATGGCAGGTTTTTGGTGGATCTTGGGGGAGTACACTTGCCCTTGCATATAGCCAATCACACCCTGAGAAGGTTACTGGCATGGTCCTGAGAGGGATTTTTCTCTTAAGAAAGAAAGAGATTGATTGGTTTTATGAGGGTGGTGCTGCTGCCATATACCCTGATGCTTGGGAGCAATTTCGTGATCTGATTCCGGAAAATGAGCGGGGAAGTTTTGTTGATGCTTATAGGAAGAGATTAAACTCCGATGATAAGGAAATACAATTTGCAGCTGCTAGAGCATGGACAATGTGGGAAATGATGACTGCACATCTCCTTCCAAATGACGAGAACATCAAGAGGGGGGAAGACGATATTTTTGCATTGGCATTTGCTAGGATTGAAAATCATTACTTTGTGAACAGAGGATTCTTTCCTTCAGATGCATACCTGTTAGATAACGTCGAAAAGATAAGGCATATAAAAACTACAATCGTACAGGGACGATATGATGTTTGCTGCCCCATGATGTCGGCGTGGGATCTCCATAAAGCATGGCCAGAAGCTGATCTCAAGGTAATTCAAGATGCAGGACATTCTGCTAATGAACCAGGAATAGCTGCAGAGCTCGTGGCGGCAAATGAGAAGCTGAAACACATAAAAATTGGAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00330 map00330

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

396

Amino Acids

44.7

Weight (kDa)

5.75

Isoelectric Point (pI)

42.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	112 - 374	4.1e-32	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	113 - 374	2e-08	Alpha/beta hydrolase family
Hydrolase_4	PF12146	137 - 237	1.7e-07	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14260 AT2G14260 AT2G14260 AT2G14260
fragaria_vesca	FvH4_2g02550
malus_domestica	MD10G1115000.v1.1
prunus_persica	Prupe.8G157100_v2.0.a1 Prupe.8G157100_v2.0.a1
pyrus_communis	pycom05g10790 pycom10g09950 pycom15g16330
rosa_chinensis	RchiOBHm_Chr6g0246361
rosa_laevigata	RLG00000015261
rosa_multiflora	Rmu_co8135098.1_g000001 Rmu_sc0001066.1_g000006 Rmu_sc0008965.1_g000003
rosa_roxburghii	Rroxscaffold_7G00214650
rosa_rugosa	Rorug05G0520500
rosa_samantha	Rh6AG034700 Rh6BG029800 Rh6CG030200 Rh6CG067300 Rh6DG029100
rosa_wichuraiana	Rw6G002810 Rw6G002970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	532
AccB7I	CCANNNNNTGG	1 cut(s)	365
AccBSI	CCGCTC	1 cut(s)	739
AccIII	TCCGGA	2 cut(s)	314, 727
AciI	CCGC	2 cut(s)	739, 1148
AclWI	GGATC	4 cut(s)	392, 495, 562, 1062
AcoI	YGGCCR	2 cut(s)	328, 1070
AcsI	RAATTY	2 cut(s)	224, 528
AcuI	CTGAAG	1 cut(s)	936
AfaI	GTAC	3 cut(s)	451, 568, 1011
AfiI	CCNNNNNNNGG	2 cut(s)	365, 604
AflII	CTTAAG	1 cut(s)	640
AgsI	TTSAA	5 cut(s)	92, 229, 506, 917, 1097
AjnI	CCWGG	3 cut(s)	358, 522, 1123
AjuI	GAANNNNNNNTTGG	4 cut(s)	25, 57, 137, 169
Alw21I	GWGCWC	1 cut(s)	1143
Alw26I	GTCTC	1 cut(s)	173
AlwI	GGATC	4 cut(s)	392, 495, 562, 1062
AlwNI	CAGNNNCTG	1 cut(s)	1079
Aor13HI	TCCGGA	2 cut(s)	314, 727
AoxI	GGCC	2 cut(s)	328, 1070
ApeKI	GCWGC	6 cut(s)	680, 683, 803, 806, 1032, 1133
ApoI	RAATTY	2 cut(s)	224, 528
ArsI	GACNNNNNNTTYG	2 cut(s)	875, 907
AspS9I	GGNCC	2 cut(s)	356, 619
AsuHPI	GGTGA	1 cut(s)	509
AvaII	GGWCC	2 cut(s)	356, 619
BalI	TGGCCA	1 cut(s)	1072
BanII	GRGCYC	1 cut(s)	1143
BauI	CACGAG	1 cut(s)	1142
BbsI	GAAGAC	1 cut(s)	888
Bbv12I	GWGCWC	1 cut(s)	1143
BbvI	GCAGC	6 cut(s)	667, 670, 793, 815, 1019, 1120
BccI	CCATC	2 cut(s)	193, 339
BceAI	ACGGC	1 cut(s)	343
BcgI	CGANNNNNNTGC	2 cut(s)	875, 909
BciT130I	CCWGG	3 cut(s)	360, 524, 1125
BciVI	GTATCC	1 cut(s)	252
BclI	TGATCA	1 cut(s)	427
BcoDI	GTCTC	1 cut(s)	173
BfaI	CTAG	3 cut(s)	6, 810, 909
BfmI	CTRYAG	1 cut(s)	1134
BfrI	CTTAAG	1 cut(s)	640
BfuAI	ACCTGC	1 cut(s)	532
BfuI	GTATCC	1 cut(s)	252
BisI	GCNGC	7 cut(s)	681, 684, 804, 807, 1033, 1134, 1149
BlsI	GCNGC	7 cut(s)	682, 685, 805, 808, 1034, 1135, 1150
BmcAI	AGTACT	1 cut(s)	451
Bme1390I	CCNGG	3 cut(s)	360, 524, 1125
Bme18I	GGWCC	2 cut(s)	356, 619
BmgT120I	GGNCC	2 cut(s)	356, 619
BmiI	GGNNCC	1 cut(s)	357
BmrFI	CCNGG	3 cut(s)	360, 524, 1125
BmsI	GCATC	5 cut(s)	146, 688, 745, 946, 1090
BpiI	GAAGAC	1 cut(s)	888
BpuEI	CTTGAG	2 cut(s)	260, 1070
BsaAI	YACGTR	1 cut(s)	164
BsaJI	CCNNGG	1 cut(s)	18
BsaWI	WCCGGW	2 cut(s)	314, 727
Bsc4I	CCNNNNNNNGG	2 cut(s)	365, 604
Bse1I	ACTGG	1 cut(s)	616
BseAI	TCCGGA	2 cut(s)	314, 727
BseBI	CCWGG	3 cut(s)	360, 524, 1125
BseDI	CCNNGG	1 cut(s)	18
BseGI	GGATG	2 cut(s)	331, 417
BseLI	CCNNNNNNNGG	2 cut(s)	365, 604
BseMII	CTCAG	5 cut(s)	168, 393, 526, 591, 614
BseNI	ACTGG	1 cut(s)	616
BseRI	GAGGAG	1 cut(s)	70
BseXI	GCAGC	6 cut(s)	667, 670, 793, 815, 1019, 1120
BsgI	GTGCAG	1 cut(s)	825
BshFI	GGCC	2 cut(s)	330, 1072
BsiHKAI	GWGCWC	1 cut(s)	1143
BsiSI	CCGG	4 cut(s)	221, 267, 315, 728
BslFI	GGGAC	1 cut(s)	1029
BslI	CCNNNNNNNGG	2 cut(s)	365, 604
BsmAI	GTCTC	1 cut(s)	173
BsmBI	CGTCTC	1 cut(s)	173
BsmFI	GGGAC	1 cut(s)	1029
BsnI	GGCC	2 cut(s)	330, 1072
Bsp1286I	GDGCHC	1 cut(s)	1143
Bsp13I	TCCGGA	2 cut(s)	314, 727
Bsp143I	GATC	7 cut(s)	397, 427, 487, 554, 718, 1054, 1081
BspACI	CCGC	2 cut(s)	739, 1148
BspANI	GGCC	2 cut(s)	330, 1072
BspCNI	CTCAG	5 cut(s)	169, 394, 525, 592, 615
BspEI	TCCGGA	2 cut(s)	314, 727
BspLI	GGNNCC	1 cut(s)	357
BspMAI	CTGCAG	1 cut(s)	1138
BspMI	ACCTGC	1 cut(s)	532
BspPI	GGATC	4 cut(s)	392, 495, 562, 1062
BspTI	CTTAAG	1 cut(s)	640
BsrBI	CCGCTC	1 cut(s)	739
BsrI	ACTGG	1 cut(s)	616
BssECI	CCNNGG	1 cut(s)	18
BssMI	GATC	7 cut(s)	397, 427, 487, 554, 718, 1054, 1081
BssSI	CACGAG	1 cut(s)	1142
BssT1I	CCWWGG	1 cut(s)	18
Bst2BI	CACGAG	1 cut(s)	1142
Bst2UI	CCWGG	3 cut(s)	360, 524, 1125
Bst6I	CTCTTC	2 cut(s)	140, 761
BstAFI	CTTAAG	1 cut(s)	640
BstBAI	YACGTR	1 cut(s)	164
BstC8I	GCNNGC	1 cut(s)	463
BstDEI	CTNAG	5 cut(s)	177, 402, 512, 600, 623
BstF5I	GGATG	2 cut(s)	331, 417
BstKTI	GATC	7 cut(s)	400, 430, 490, 557, 721, 1057, 1084
BstMAI	GTCTC	1 cut(s)	173
BstMBI	GATC	7 cut(s)	397, 427, 487, 554, 718, 1054, 1081
BstMWI	GCNNNNNNNGC	1 cut(s)	812
BstNI	CCWGG	3 cut(s)	360, 524, 1125
BstNSI	RCATGY	1 cut(s)	461
BstSCI	CCNGG	3 cut(s)	358, 522, 1123
BstSFI	CTRYAG	1 cut(s)	1134
BstV1I	GCAGC	6 cut(s)	667, 670, 793, 815, 1019, 1120
BstV2I	GAAGAC	1 cut(s)	888
BstX2I	RGATCY	3 cut(s)	487, 554, 1054
BstYI	RGATCY	3 cut(s)	487, 554, 1054
BsuI	GTATCC	1 cut(s)	252
BsuRI	GGCC	2 cut(s)	330, 1072
BtsCI	GGATG	2 cut(s)	331, 417
BtsI	GCAGTG	1 cut(s)	132
BtsIMutI	CAGTG	1 cut(s)	132
BveI	ACCTGC	1 cut(s)	532
Cac8I	GCNNGC	1 cut(s)	463
CaiI	CAGNNNCTG	1 cut(s)	1079
Cfr13I	GGNCC	2 cut(s)	356, 619
Csp6I	GTAC	3 cut(s)	450, 567, 1010
CviAII	CATG	7 cut(s)	350, 458, 483, 616, 816, 1039, 1068
CviQI	GTAC	3 cut(s)	450, 567, 1010
DdeI	CTNAG	5 cut(s)	177, 402, 512, 600, 623
DpnI	GATC	7 cut(s)	399, 429, 489, 556, 720, 1056, 1083
DpnII	GATC	7 cut(s)	397, 427, 487, 554, 718, 1054, 1081
EaeI	YGGCCR	2 cut(s)	328, 1070
Eam1104I	CTCTTC	2 cut(s)	140, 761
EarI	CTCTTC	2 cut(s)	140, 761
Ecl136II	GAGCTC	1 cut(s)	1141
Eco130I	CCWWGG	1 cut(s)	18
Eco24I	GRGCYC	1 cut(s)	1143
Eco47I	GGWCC	2 cut(s)	356, 619
Eco53kI	GAGCTC	1 cut(s)	1141
Eco57I	CTGAAG	1 cut(s)	936
EcoICRI	GAGCTC	1 cut(s)	1141
EcoRI	GAATTC	1 cut(s)	224
EcoRII	CCWGG	3 cut(s)	358, 522, 1123
EcoT14I	CCWWGG	1 cut(s)	18
EcoT22I	ATGCAT	1 cut(s)	961
EcoT38I	GRGCYC	1 cut(s)	1143
ErhI	CCWWGG	1 cut(s)	18
Esp3I	CGTCTC	1 cut(s)	173
FaeI	CATG	7 cut(s)	353, 461, 486, 619, 819, 1042, 1071
FaqI	GGGAC	1 cut(s)	1029
FatI	CATG	7 cut(s)	349, 457, 482, 615, 815, 1038, 1067
FauI	CCCGC	1 cut(s)	732
FbaI	TGATCA	1 cut(s)	427
Fnu4HI	GCNGC	7 cut(s)	681, 684, 804, 807, 1033, 1134, 1149
FokI	GGATG	2 cut(s)	318, 404
FriOI	GRGCYC	1 cut(s)	1143
Fsp4HI	GCNGC	7 cut(s)	681, 684, 804, 807, 1033, 1134, 1149
FspBI	CTAG	3 cut(s)	6, 810, 909
GluI	GCNGC	7 cut(s)	681, 684, 804, 807, 1033, 1134, 1149
HaeIII	GGCC	2 cut(s)	330, 1072
HapII	CCGG	4 cut(s)	221, 267, 315, 728
Hin1II	CATG	7 cut(s)	353, 461, 486, 619, 819, 1042, 1071
HinfI	GANTC	7 cut(s)	24, 194, 203, 390, 414, 724, 942
HpaII	CCGG	4 cut(s)	221, 267, 315, 728
HphI	GGTGA	1 cut(s)	509
Hpy166II	GTNNAC	2 cut(s)	569, 934
Hpy188I	TCNGA	7 cut(s)	208, 246, 286, 515, 723, 781, 955
Hpy188III	TCNNGA	8 cut(s)	315, 401, 533, 622, 716, 728, 871, 1097
Hpy8I	GTNNAC	2 cut(s)	569, 934
Hpy99I	CGWCG	1 cut(s)	980
HpyAV	CCTTC	9 cut(s)	64, 68, 108, 115, 121, 205, 598, 860, 960
HpyCH4IV	ACGT	2 cut(s)	163, 975
HpyCH4V	TGCA	9 cut(s)	137, 171, 581, 803, 842, 896, 959, 1103, 1136
HpyF10VI	GCNNNNNNNGC	1 cut(s)	812
HpyF3I	CTNAG	5 cut(s)	177, 402, 512, 600, 623
HpySE526I	ACGT	2 cut(s)	163, 975
Hsp92II	CATG	7 cut(s)	353, 461, 486, 619, 819, 1042, 1071
Kpn2I	TCCGGA	2 cut(s)	314, 727
Ksp22I	TGATCA	1 cut(s)	427
Kzo9I	GATC	7 cut(s)	397, 427, 487, 554, 718, 1054, 1081
LmnI	GCTCC	4 cut(s)	269, 307, 706, 1181
Lsp1109I	GCAGC	6 cut(s)	667, 670, 793, 815, 1019, 1120
LweI	GCATC	5 cut(s)	146, 688, 745, 946, 1090
MaeI	CTAG	3 cut(s)	6, 810, 909
MaeII	ACGT	2 cut(s)	163, 975
MaeIII	GTNAC	3 cut(s)	13, 497, 607
MalI	GATC	7 cut(s)	399, 429, 489, 556, 720, 1056, 1083
MbiI	CCGCTC	1 cut(s)	739
MboI	GATC	7 cut(s)	397, 427, 487, 554, 718, 1054, 1081
MboII	GAAGA	7 cut(s)	36, 157, 338, 399, 482, 778, 893
MflI	RGATCY	3 cut(s)	487, 554, 1054
MhlI	GDGCHC	1 cut(s)	1143
MlsI	TGGCCA	1 cut(s)	1072
MluCI	AATT	9 cut(s)	33, 151, 215, 224, 528, 710, 797, 1092, 1176
MluNI	TGGCCA	1 cut(s)	1072
Mox20I	TGGCCA	1 cut(s)	1072
Mph1103I	ATGCAT	1 cut(s)	961
MroI	TCCGGA	2 cut(s)	314, 727
MscI	TGGCCA	1 cut(s)	1072
MseI	TTAA	3 cut(s)	65, 641, 773
Msp20I	TGGCCA	1 cut(s)	1072
MspA1I	CMGCKG	1 cut(s)	806
MspCI	CTTAAG	1 cut(s)	640
MspI	CCGG	4 cut(s)	221, 267, 315, 728
MspR9I	CCNGG	3 cut(s)	360, 524, 1125
MvaI	CCWGG	3 cut(s)	360, 524, 1125
MwoI	GCNNNNNNNGC	1 cut(s)	812
NdeII	GATC	7 cut(s)	397, 427, 487, 554, 718, 1054, 1081
NlaIII	CATG	7 cut(s)	353, 461, 486, 619, 819, 1042, 1071
NlaIV	GGNNCC	1 cut(s)	357
NmuCI	GTSAC	2 cut(s)	13, 497
NsiI	ATGCAT	1 cut(s)	961
NspI	RCATGY	1 cut(s)	461
PfeI	GAWTC	7 cut(s)	24, 194, 203, 390, 414, 724, 942
PflMI	CCANNNNNTGG	1 cut(s)	365
PfoI	TCCNGGA	1 cut(s)	358
PkrI	GCNGC	7 cut(s)	682, 685, 805, 808, 1034, 1135, 1150
Ppu21I	YACGTR	1 cut(s)	164
Psp124BI	GAGCTC	1 cut(s)	1143
Psp6I	CCWGG	3 cut(s)	358, 522, 1123
PspGI	CCWGG	3 cut(s)	358, 522, 1123
PspN4I	GGNNCC	1 cut(s)	357
PspPI	GGNCC	2 cut(s)	356, 619
PstI	CTGCAG	1 cut(s)	1138
PstNI	CAGNNNCTG	1 cut(s)	1079
PsuI	RGATCY	3 cut(s)	487, 554, 1054
PvuII	CAGCTG	1 cut(s)	806
RsaI	GTAC	3 cut(s)	451, 568, 1011
RsaNI	GTAC	3 cut(s)	450, 567, 1010
SacI	GAGCTC	1 cut(s)	1143
SaqAI	TTAA	3 cut(s)	65, 641, 773
SatI	GCNGC	7 cut(s)	681, 684, 804, 807, 1033, 1134, 1149
Sau3AI	GATC	7 cut(s)	397, 427, 487, 554, 718, 1054, 1081
Sau96I	GGNCC	2 cut(s)	356, 619
ScaI	AGTACT	1 cut(s)	451
ScrFI	CCNGG	3 cut(s)	360, 524, 1125
SduI	GDGCHC	1 cut(s)	1143
SfaNI	GCATC	5 cut(s)	146, 688, 745, 946, 1090
SfcI	CTRYAG	1 cut(s)	1134
SinI	GGWCC	2 cut(s)	356, 619
SmlI	CTYRAG	3 cut(s)	275, 640, 1085
SmoI	CTYRAG	3 cut(s)	275, 640, 1085
Sse9I	AATT	9 cut(s)	33, 151, 215, 224, 528, 710, 797, 1092, 1176
SsiI	CCGC	2 cut(s)	739, 1148
SspMI	CTAG	3 cut(s)	6, 810, 909
SstI	GAGCTC	1 cut(s)	1143
StyD4I	CCNGG	3 cut(s)	358, 522, 1123
StyI	CCWWGG	1 cut(s)	18
TaiI	ACGT	2 cut(s)	166, 978
TaqI	TCGA	3 cut(s)	197, 385, 978
TasI	AATT	9 cut(s)	33, 151, 215, 224, 528, 710, 797, 1092, 1176
TatI	WGTACW	2 cut(s)	449, 566
TauI	GCSGC	1 cut(s)	1151
TfiI	GAWTC	7 cut(s)	24, 194, 203, 390, 414, 724, 942
Tru1I	TTAA	3 cut(s)	65, 641, 773
Tru9I	TTAA	3 cut(s)	65, 641, 773
TscAI	CASTG	1 cut(s)	139
TseFI	GTSAC	2 cut(s)	13, 497
TseI	GCWGC	6 cut(s)	680, 683, 803, 806, 1032, 1133
Tsp45I	GTSAC	2 cut(s)	13, 497
TspDTI	ATGAA	2 cut(s)	338, 1134
TspRI	CASTG	1 cut(s)	139
Van91I	CCANNNNNTGG	1 cut(s)	365
Vha464I	CTTAAG	1 cut(s)	640
VpaK11BI	GGWCC	2 cut(s)	356, 619
XapI	RAATTY	2 cut(s)	224, 528
XceI	RCATGY	1 cut(s)	461
XspI	CTAG	3 cut(s)	6, 810, 909
ZrmI	AGTACT	1 cut(s)	451
Zsp2I	ATGCAT	1 cut(s)	961

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.