Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010755

Physical Location & Seq

Genomic Coordinates Forward (+)

7697311 .. 7699630

Gene Structure 2320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G17720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGCGTCTAAATCGAAGCAGCATCTTCGTTATCAGCCGCGAAAATCTGTGTCACGATCAACACAAGCTTTCACGGTGCTTATACTTCTTCTCGTAGTGATTCTGATTCTTCTGGGTCTCGGGATTTTGTCACTACCTAATGCTAATAGAAACTCTTCCAAGACGAATGATTTGACCAACATTGTACGAAAGAGTGAGACGAGTTCTGGAGATGAAGAAGGGAATGGTGAACGTTGGGTTGAAGTTATTTCTTGGGAGCCTCGTGCTGTTGTTTATCACAATTTCTTGACTAATGAAGAATGTGAGCACTTGATCAGCCTTGCTAAACCGAGTATGGTTAAGTCAACCGTGGTAGATGAGAAAACCGGTGGGAGCAAAGATAGCAGAGTGAGAACTAGCTCAGGAACTTTTCTTAGAAGAGGACATGACGAAGTTGTCGAGGTGATTGAGAAAAGGATTTCAGATTTCACCTTCATTCCTGTTGAAAATGGTGAAGGTCTTCAAGTTCTTCACTACCAAGTTGGGCAGAAGTATGAGCCTCACTATGACTATTTCTTAGATGAGTTCAACACCAAGAATGGAGGACAACGAATAGCTACTGTGCTTATGTACCTCTCTGATGTCGATGATGGTGGCGAGACTGTGTTCCCTGCAGCAAGAGGAAACATTAGTGCTGTCCCATGGTGGAACGAGCTCTCAAAATGTGGTAAAGAAGGACTATCTGTTCTACCAAAGAAGCGAGATGCTTTACTTTTCTGGAACATGAGGCCTGATGCATCTCTAGACCCTTCGAGCTTGCACGGTGGATGTCCAGTGGTGAAAGGAAACAAATGGTCATCCACGAAATGGTTCCATGTCCACGAGTTCAAGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004656 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006464 GO:0006520 GO:0006575 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0018401 GO:0019471 GO:0019511 GO:0019538 GO:0019752 GO:0019798 GO:0021700 GO:0022622 GO:0030154 GO:0031543 GO:0031545 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0051213 GO:0055114 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:0140096 GO:1901564 GO:1901605 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3

Protein Analysis

291

Amino Acids

32.69

Weight (kDa)

7.75

Isoelectric Point (pI)

43.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	165 - 285	3.3e-08	2OG-Fe(II) oxygenase superfamily
2OG-FeII_Oxy_3	PF13640	167 - 285	7.8e-18	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17720 AT4G35810 AT4G35810 AT5G66060 AT5G66060
fragaria_vesca	FvH4_1g11100
malus_domestica	MD02G1123600.v1.1 MD15G1237500.v1.1
prunus_persica	Prupe.7G174900_v2.0.a1
pyrus_communis	pycom02g09640
rosa_chinensis	RchiOBHm_Chr2g0098371
rosa_laevigata	RLG00000016795
rosa_multiflora	Rmu_sc0023758.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144030
rosa_rugosa	Rorug02G0072600 Rorug02G0072700
rosa_samantha	Rh2AG119700 Rh2BG122800 Rh2CG124400
rosa_wichuraiana	Rw2G009380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	434
AccB7I	CCANNNNNTGG	1 cut(s)	846
AccII	CGCG	1 cut(s)	40
AciI	CCGC	1 cut(s)	38
AclI	AACGTT	1 cut(s)	232
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	186, 611
AfiI	CCNNNNNNNGG	1 cut(s)	846
AgeI	ACCGGT	1 cut(s)	365
AgsI	TTSAA	5 cut(s)	242, 485, 503, 568, 868
AloI	GAACNNNNNNTCC	2 cut(s)	708, 740
AluBI	AGCT	5 cut(s)	68, 399, 596, 694, 795
AluI	AGCT	5 cut(s)	68, 399, 596, 694, 795
Alw21I	GWGCWC	2 cut(s)	309, 696
Alw26I	GTCTC	3 cut(s)	122, 191, 632
Ama87I	CYCGRG	1 cut(s)	119
AoxI	GGCC	1 cut(s)	767
ApeKI	GCWGC	2 cut(s)	19, 653
ArsI	GACNNNNNNTTYG	2 cut(s)	154, 186
AsiGI	ACCGGT	1 cut(s)	365
Asp700I	GAANNNNTTC	3 cut(s)	154, 498, 848
AsuHPI	GGTGA	5 cut(s)	239, 454, 460, 503, 829
AvaI	CYCGRG	1 cut(s)	119
BanII	GRGCYC	1 cut(s)	696
BauI	CACGAG	2 cut(s)	261, 860
BbsI	GAAGAC	1 cut(s)	491
Bbv12I	GWGCWC	2 cut(s)	309, 696
BbvI	GCAGC	2 cut(s)	31, 665
BccI	CCATC	1 cut(s)	623
BcgI	CGANNNNNNTGC	2 cut(s)	8, 42
BclI	TGATCA	1 cut(s)	312
BcoDI	GTCTC	3 cut(s)	122, 191, 632
BfaI	CTAG	2 cut(s)	396, 782
BfmI	CTRYAG	1 cut(s)	651
BisI	GCNGC	3 cut(s)	20, 38, 654
BlsI	GCNGC	3 cut(s)	21, 39, 655
BmeT110I	CYCGRG	1 cut(s)	119
BmiI	GGNNCC	2 cut(s)	258, 851
BmsI	GCATC	4 cut(s)	31, 733, 763, 785
BpiI	GAAGAC	1 cut(s)	491
BpmI	CTGGAG	1 cut(s)	228
Bpu10I	CCTNAGC	1 cut(s)	400
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	122
BsaJI	CCNNGG	2 cut(s)	348, 680
BsaWI	WCCGGW	1 cut(s)	365
Bsc4I	CCNNNNNNNGG	1 cut(s)	846
Bse118I	RCCGGY	1 cut(s)	365
Bse1I	ACTGG	1 cut(s)	812
BseDI	CCNNGG	2 cut(s)	348, 680
BseGI	GGATG	2 cut(s)	812, 836
BseLI	CCNNNNNNNGG	1 cut(s)	846
BseMII	CTCAG	1 cut(s)	414
BseNI	ACTGG	1 cut(s)	812
BseXI	GCAGC	2 cut(s)	31, 665
Bsh1236I	CGCG	1 cut(s)	40
BshFI	GGCC	1 cut(s)	769
BshTI	ACCGGT	1 cut(s)	365
BsiHKAI	GWGCWC	2 cut(s)	309, 696
BsiHKCI	CYCGRG	1 cut(s)	119
BsiSI	CCGG	1 cut(s)	366
BslFI	GGGAC	1 cut(s)	662
BslI	CCNNNNNNNGG	1 cut(s)	846
BsmAI	GTCTC	3 cut(s)	122, 191, 632
BsmBI	CGTCTC	1 cut(s)	191
BsmFI	GGGAC	1 cut(s)	662
BsnI	GGCC	1 cut(s)	769
Bso31I	GGTCTC	1 cut(s)	122
BsoBI	CYCGRG	1 cut(s)	119
Bsp1286I	GDGCHC	2 cut(s)	309, 696
Bsp143I	GATC	2 cut(s)	56, 312
Bsp19I	CCATGG	1 cut(s)	680
BspACI	CCGC	1 cut(s)	38
BspANI	GGCC	1 cut(s)	769
BspCNI	CTCAG	1 cut(s)	413
BspFNI	CGCG	1 cut(s)	40
BspLI	GGNNCC	2 cut(s)	258, 851
BspMAI	CTGCAG	1 cut(s)	655
BspTNI	GGTCTC	1 cut(s)	122
BsrFI	RCCGGY	1 cut(s)	365
BsrI	ACTGG	1 cut(s)	812
BssAI	RCCGGY	1 cut(s)	365
BssECI	CCNNGG	2 cut(s)	348, 680
BssMI	GATC	2 cut(s)	56, 312
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	2 cut(s)	261, 860
BssT1I	CCWWGG	1 cut(s)	680
Bst2BI	CACGAG	2 cut(s)	261, 860
Bst4CI	ACNGT	5 cut(s)	76, 349, 601, 643, 803
Bst6I	CTCTTC	2 cut(s)	160, 412
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	797
BstDEI	CTNAG	3 cut(s)	400, 413, 556
BstDSI	CCRYGG	2 cut(s)	348, 680
BstF5I	GGATG	2 cut(s)	812, 836
BstFNI	CGCG	1 cut(s)	40
BstKTI	GATC	2 cut(s)	59, 315
BstMAI	GTCTC	3 cut(s)	122, 191, 632
BstMBI	GATC	2 cut(s)	56, 312
BstMWI	GCNNNNNNNGC	1 cut(s)	381
BstSFI	CTRYAG	1 cut(s)	651
BstUI	CGCG	1 cut(s)	40
BstV1I	GCAGC	2 cut(s)	31, 665
BstV2I	GAAGAC	1 cut(s)	491
BsuRI	GGCC	1 cut(s)	769
BtgI	CCRYGG	2 cut(s)	348, 680
BtsCI	GGATG	2 cut(s)	812, 836
BtsIMutI	CAGTG	1 cut(s)	819
Cac8I	GCNNGC	1 cut(s)	797
Cfr10I	RCCGGY	1 cut(s)	365
Csp6I	GTAC	2 cut(s)	185, 610
CspAI	ACCGGT	1 cut(s)	365
CviAII	CATG	4 cut(s)	425, 681, 763, 854
CviQI	GTAC	2 cut(s)	185, 610
DdeI	CTNAG	3 cut(s)	400, 413, 556
DpnI	GATC	2 cut(s)	58, 314
DpnII	GATC	2 cut(s)	56, 312
DrdI	GACNNNNNNGTC	1 cut(s)	434
DseDI	GACNNNNNNGTC	1 cut(s)	434
Eam1104I	CTCTTC	2 cut(s)	160, 412
EarI	CTCTTC	2 cut(s)	160, 412
Ecl136II	GAGCTC	1 cut(s)	694
Eco130I	CCWWGG	1 cut(s)	680
Eco147I	AGGCCT	1 cut(s)	769
Eco24I	GRGCYC	1 cut(s)	696
Eco31I	GGTCTC	1 cut(s)	122
Eco53kI	GAGCTC	1 cut(s)	694
Eco88I	CYCGRG	1 cut(s)	119
EcoICRI	GAGCTC	1 cut(s)	694
EcoT14I	CCWWGG	1 cut(s)	680
EcoT22I	ATGCAT	1 cut(s)	778
EcoT38I	GRGCYC	1 cut(s)	696
ErhI	CCWWGG	1 cut(s)	680
Esp3I	CGTCTC	1 cut(s)	191
FaeI	CATG	4 cut(s)	428, 684, 766, 857
FaiI	YATR	9 cut(s)	83, 335, 426, 534, 546, 608, 682, 764, 855
FaqI	GGGAC	1 cut(s)	662
FatI	CATG	4 cut(s)	424, 680, 762, 853
FbaI	TGATCA	1 cut(s)	312
Fnu4HI	GCNGC	3 cut(s)	20, 38, 654
FokI	GGATG	2 cut(s)	819, 823
FriOI	GRGCYC	1 cut(s)	696
Fsp4HI	GCNGC	3 cut(s)	20, 38, 654
FspBI	CTAG	2 cut(s)	396, 782
GluI	GCNGC	3 cut(s)	20, 38, 654
GsuI	CTGGAG	1 cut(s)	228
HaeIII	GGCC	1 cut(s)	769
HapII	CCGG	1 cut(s)	366
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	428, 684, 766, 857
HincII	GTYRAC	1 cut(s)	345
HindII	GTYRAC	1 cut(s)	345
HindIII	AAGCTT	1 cut(s)	66
HinfI	GANTC	2 cut(s)	100, 106
HpaII	CCGG	1 cut(s)	366
HphI	GGTGA	5 cut(s)	239, 454, 460, 503, 829
Hpy166II	GTNNAC	3 cut(s)	230, 345, 859
Hpy188I	TCNGA	3 cut(s)	105, 463, 619
Hpy188III	TCNNGA	7 cut(s)	54, 121, 207, 286, 402, 757, 782
Hpy8I	GTNNAC	3 cut(s)	230, 345, 859
HpyAV	CCTTC	5 cut(s)	212, 481, 488, 707, 798
HpyCH4III	ACNGT	5 cut(s)	76, 349, 601, 643, 803
HpyCH4IV	ACGT	1 cut(s)	232
HpyCH4V	TGCA	3 cut(s)	653, 776, 799
HpyF10VI	GCNNNNNNNGC	1 cut(s)	381
HpyF3I	CTNAG	3 cut(s)	400, 413, 556
HpySE526I	ACGT	1 cut(s)	232
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	428, 684, 766, 857
Ksp22I	TGATCA	1 cut(s)	312
Kzo9I	GATC	2 cut(s)	56, 312
LmnI	GCTCC	2 cut(s)	256, 372
LpnPI	CCDG	9 cut(s)	98, 192, 379, 387, 492, 663, 742, 783, 825
Lsp1109I	GCAGC	2 cut(s)	31, 665
LweI	GCATC	4 cut(s)	31, 733, 763, 785
MaeI	CTAG	2 cut(s)	396, 782
MaeII	ACGT	1 cut(s)	232
MaeIII	GTNAC	2 cut(s)	51, 129
MalI	GATC	2 cut(s)	58, 314
MboI	GATC	2 cut(s)	56, 312
MboII	GAAGA	9 cut(s)	17, 80, 101, 147, 227, 308, 429, 491, 500
MhlI	GDGCHC	2 cut(s)	309, 696
MluCI	AATT	1 cut(s)	280
MnlI	CCTC	8 cut(s)	270, 413, 433, 549, 575, 623, 653, 759
Mph1103I	ATGCAT	1 cut(s)	778
MroXI	GAANNNNTTC	3 cut(s)	154, 498, 848
MseI	TTAA	2 cut(s)	339, 874
MspI	CCGG	1 cut(s)	366
MvnI	CGCG	1 cut(s)	40
MwoI	GCNNNNNNNGC	1 cut(s)	381
NcoI	CCATGG	1 cut(s)	680
NdeII	GATC	2 cut(s)	56, 312
NlaIII	CATG	4 cut(s)	428, 684, 766, 857
NlaIV	GGNNCC	2 cut(s)	258, 851
NmuCI	GTSAC	2 cut(s)	51, 129
NsiI	ATGCAT	1 cut(s)	778
PceI	AGGCCT	1 cut(s)	769
PcsI	WCGNNNNNNNCGW	1 cut(s)	435
PdmI	GAANNNNTTC	3 cut(s)	154, 498, 848
PfeI	GAWTC	2 cut(s)	100, 106
PflMI	CCANNNNNTGG	1 cut(s)	846
PinAI	ACCGGT	1 cut(s)	365
PkrI	GCNGC	3 cut(s)	21, 39, 655
Psp124BI	GAGCTC	1 cut(s)	696
Psp1406I	AACGTT	1 cut(s)	232
PspN4I	GGNNCC	2 cut(s)	258, 851
PstI	CTGCAG	1 cut(s)	655
RsaI	GTAC	2 cut(s)	186, 611
RsaNI	GTAC	2 cut(s)	185, 610
SacI	GAGCTC	1 cut(s)	696
SaqAI	TTAA	2 cut(s)	339, 874
SatI	GCNGC	3 cut(s)	20, 38, 654
Sau3AI	GATC	2 cut(s)	56, 312
SduI	GDGCHC	2 cut(s)	309, 696
SfaNI	GCATC	4 cut(s)	31, 733, 763, 785
SfcI	CTRYAG	1 cut(s)	651
Sse9I	AATT	1 cut(s)	280
SseBI	AGGCCT	1 cut(s)	769
SsiI	CCGC	1 cut(s)	38
SspMI	CTAG	2 cut(s)	396, 782
SstI	GAGCTC	1 cut(s)	696
StuI	AGGCCT	1 cut(s)	769
StyI	CCWWGG	1 cut(s)	680
TaaI	ACNGT	5 cut(s)	76, 349, 601, 643, 803
TaiI	ACGT	1 cut(s)	235
TaqI	TCGA	4 cut(s)	14, 438, 624, 791
TasI	AATT	1 cut(s)	280
TauI	GCSGC	1 cut(s)	40
TfiI	GAWTC	2 cut(s)	100, 106
Tru1I	TTAA	2 cut(s)	339, 874
Tru9I	TTAA	2 cut(s)	339, 874
TscAI	CASTG	1 cut(s)	819
TseFI	GTSAC	2 cut(s)	51, 129
TseI	GCWGC	2 cut(s)	19, 653
Tsp45I	GTSAC	2 cut(s)	51, 129
TspDTI	ATGAA	3 cut(s)	228, 309, 463
TspRI	CASTG	1 cut(s)	819
Van91I	CCANNNNNTGG	1 cut(s)	846
XbaI	TCTAGA	1 cut(s)	781
XmnI	GAANNNNTTC	3 cut(s)	154, 498, 848
XspI	CTAG	2 cut(s)	396, 782
Zsp2I	ATGCAT	1 cut(s)	778

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.