Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0010755

Physical Location & Seq

Genomic Coordinates Forward (+)

10956784 .. 10959520

Gene Structure 2737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG124400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGCGGTTAAGCCCAGGCACGCGCGCGTCGCGGGTCGCAAAACGACGTCGTCGTCGTCGTCCTCGACTCTGGTGCTGACCTTGCTCGTCATGTTCACCTTCGTCATTCTCATTCTCCTCGCCCTCGGAATCCTCTCCGTTCCGAGCGGCTCCTCCGGCGACTCGCCCAAGGCCAACGATCTCAGCTCGATTCTGCGCAACGCCGAGAGGAGTCAGGGAAATGACGGAAGCAAGGAGCAGTGGGTTGAAGTCATCTCCTGGGAGCCAAGAGCTTTTGTTTATCACAATTTCTTGACACAGCATGAATGTGATTATCTAATCAATCTAGCCAAGCCTCATATGGAGAAGTCGACAGTAGTTGACAGTGAAACCGGAAAGAGCAAAGATAGCAGGGTTCGTACAAGCTCTGGAACATTTTTGGCTAGAGGACGGGATAAGGTTATCAGGAACATTGAGAAAAAAATTGCTAATTTCACCTTTCTACCTGTAGAACACGGGGAGGGACTTCAAATTCTCCACTATGAAGTTGGACAGAAGTATGAGCCTCACTTTGACTATTTTCAGGATGAATATAACACTAGGAATGGAGGTCAACGTATAGCTACAATTCTGATGTATCTCTCAGATGTTGAAGAAGGGGGTGAGACTGTTTTCCCTGCTGCCAAAGGGAATATAAGTTCTGTGCCTTGGTGGGATGAGCTATCCGAATGTGGGAAAAAAGGACTTTCTGTTAAACCTAAGATGGGAGATGCTCTGCTTTTCTGGAGCATGAATCCTGATGCAACTTTAGATCCTTCAAGTTTGCATGGTGGATGCCCTGTAATCAGGGGGAATAAATGGTCATCTACTAAATGGATTCGTGTGGACGAGTACAAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004656 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006464 GO:0006520 GO:0006575 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0018401 GO:0019471 GO:0019511 GO:0019538 GO:0019752 GO:0019798 GO:0021700 GO:0022622 GO:0030154 GO:0031543 GO:0031545 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0051213 GO:0055114 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:0140096 GO:1901564 GO:1901605 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3

Protein Analysis

293

Amino Acids

32.67

Weight (kDa)

7.74

Isoelectric Point (pI)

46.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	167 - 287	2.5e-09	2OG-Fe(II) oxygenase superfamily
2OG-FeII_Oxy_3	PF13640	169 - 287	2.6e-19	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17720 AT4G35810 AT4G35810 AT5G66060 AT5G66060
fragaria_vesca	FvH4_1g11100
malus_domestica	MD02G1123600.v1.1 MD15G1237500.v1.1
prunus_persica	Prupe.7G174900_v2.0.a1
pyrus_communis	pycom02g09640
rosa_chinensis	RchiOBHm_Chr2g0098371
rosa_laevigata	RLG00000016795
rosa_multiflora	Rmu_sc0023758.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144030
rosa_rugosa	Rorug02G0072600 Rorug02G0072700
rosa_samantha	Rh2AG119700 Rh2BG122800 Rh2CG124400
rosa_wichuraiana	Rw2G009380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	52
AatII	GACGTC	1 cut(s)	50
Acc16I	TGCGCA	1 cut(s)	197
AccBSI	CCGCTC	1 cut(s)	147
AccI	GTMKAC	1 cut(s)	350
AccII	CGCG	4 cut(s)	23, 25, 27, 32
AciI	CCGC	3 cut(s)	5, 32, 147
AclWI	GGATC	1 cut(s)	785
AcsI	RAATTY	2 cut(s)	510, 876
AcyI	GRCGYC	1 cut(s)	47
AfaI	GTAC	2 cut(s)	400, 872
AfiI	CCNNNNNNNGG	2 cut(s)	711, 743
AgsI	TTSAA	4 cut(s)	248, 509, 632, 798
AjnI	CCWGG	2 cut(s)	14, 257
AloI	GAACNNNNNNTCC	2 cut(s)	661, 693
AluBI	AGCT	5 cut(s)	186, 272, 405, 602, 700
AluI	AGCT	5 cut(s)	186, 272, 405, 602, 700
Alw26I	GTCTC	1 cut(s)	638
AlwI	GGATC	1 cut(s)	785
AoxI	GGCC	1 cut(s)	171
ApeKI	GCWGC	1 cut(s)	659
ApoI	RAATTY	2 cut(s)	510, 876
AspLEI	GCGC	3 cut(s)	25, 27, 198
AsuHPI	GGTGA	3 cut(s)	88, 466, 653
BbvI	GCAGC	1 cut(s)	646
BccI	CCATC	1 cut(s)	736
BcgI	CGANNNNNNTGC	2 cut(s)	55, 89
BciT130I	CCWGG	2 cut(s)	16, 259
BcoDI	GTCTC	1 cut(s)	638
BfaI	CTAG	3 cut(s)	326, 423, 579
BfmI	CTRYAG	1 cut(s)	486
BisI	GCNGC	2 cut(s)	148, 660
BlsI	GCNGC	2 cut(s)	149, 661
Bme1390I	CCNGG	2 cut(s)	16, 259
BmiI	GGNNCC	2 cut(s)	151, 264
BmrFI	CCNGG	2 cut(s)	16, 259
BmsI	GCATC	3 cut(s)	739, 769, 803
BpmI	CTGGAG	1 cut(s)	784
BsaHI	GRCGYC	1 cut(s)	47
BsaJI	CCNNGG	5 cut(s)	14, 124, 168, 258, 686
BsaWI	WCCGGW	1 cut(s)	371
Bsc4I	CCNNNNNNNGG	2 cut(s)	711, 743
BseBI	CCWGG	2 cut(s)	16, 259
BseDI	CCNNGG	5 cut(s)	14, 124, 168, 258, 686
BseGI	GGATG	3 cut(s)	571, 700, 818
BseLI	CCNNNNNNNGG	2 cut(s)	711, 743
BseMII	CTCAG	2 cut(s)	196, 636
BsePI	GCGCGC	1 cut(s)	23
BseRI	GAGGAG	3 cut(s)	107, 142, 223
BseXI	GCAGC	1 cut(s)	646
Bsh1236I	CGCG	4 cut(s)	23, 25, 27, 32
BshFI	GGCC	1 cut(s)	173
BsiSI	CCGG	2 cut(s)	156, 372
BslFI	GGGAC	1 cut(s)	516
BslI	CCNNNNNNNGG	2 cut(s)	711, 743
BsmAI	GTCTC	1 cut(s)	638
BsmFI	GGGAC	1 cut(s)	516
BsnI	GGCC	1 cut(s)	173
Bsp143I	GATC	2 cut(s)	178, 790
BspACI	CCGC	3 cut(s)	5, 32, 147
BspANI	GGCC	1 cut(s)	173
BspCNI	CTCAG	2 cut(s)	195, 635
BspFNI	CGCG	4 cut(s)	23, 25, 27, 32
BspLI	GGNNCC	2 cut(s)	151, 264
BspPI	GGATC	1 cut(s)	785
BsrBI	CCGCTC	1 cut(s)	147
BssECI	CCNNGG	5 cut(s)	14, 124, 168, 258, 686
BssHII	GCGCGC	1 cut(s)	23
BssMI	GATC	2 cut(s)	178, 790
BssNI	GRCGYC	1 cut(s)	47
BssT1I	CCWWGG	2 cut(s)	168, 686
Bst2UI	CCWGG	2 cut(s)	16, 259
Bst4CI	ACNGT	3 cut(s)	355, 365, 649
BstACI	GRCGYC	1 cut(s)	47
BstC8I	GCNNGC	2 cut(s)	21, 25
BstDEI	CTNAG	3 cut(s)	182, 622, 738
BstF5I	GGATG	3 cut(s)	571, 700, 818
BstFNI	CGCG	4 cut(s)	23, 25, 27, 32
BstHHI	GCGC	3 cut(s)	25, 27, 198
BstKTI	GATC	2 cut(s)	181, 793
BstMAI	GTCTC	1 cut(s)	638
BstMBI	GATC	2 cut(s)	178, 790
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 82, 156, 387
BstNI	CCWGG	2 cut(s)	16, 259
BstSCI	CCNGG	2 cut(s)	14, 257
BstSFI	CTRYAG	1 cut(s)	486
BstUI	CGCG	4 cut(s)	23, 25, 27, 32
BstV1I	GCAGC	1 cut(s)	646
BstX2I	RGATCY	1 cut(s)	790
BstYI	RGATCY	1 cut(s)	790
BsuRI	GGCC	1 cut(s)	173
BtsCI	GGATG	3 cut(s)	571, 700, 818
BtsI	GCAGTG	1 cut(s)	245
BtsIMutI	CAGTG	2 cut(s)	245, 370
Cac8I	GCNNGC	2 cut(s)	21, 25
CfoI	GCGC	3 cut(s)	25, 27, 198
CseI	GACGC	1 cut(s)	16
Csp6I	GTAC	2 cut(s)	399, 871
CviAII	CATG	4 cut(s)	91, 302, 769, 806
CviQI	GTAC	2 cut(s)	399, 871
DdeI	CTNAG	3 cut(s)	182, 622, 738
DpnI	GATC	2 cut(s)	180, 792
DpnII	GATC	2 cut(s)	178, 790
DrdI	GACNNNNNNGTC	1 cut(s)	52
DseDI	GACNNNNNNGTC	1 cut(s)	52
Eco130I	CCWWGG	2 cut(s)	168, 686
EcoRII	CCWGG	2 cut(s)	14, 257
EcoT14I	CCWWGG	2 cut(s)	168, 686
ErhI	CCWWGG	2 cut(s)	168, 686
FaeI	CATG	4 cut(s)	94, 305, 772, 809
FaqI	GGGAC	1 cut(s)	516
FatI	CATG	4 cut(s)	90, 301, 768, 805
FauI	CCCGC	1 cut(s)	25
FauNDI	CATATG	1 cut(s)	339
FblI	GTMKAC	1 cut(s)	350
Fnu4HI	GCNGC	2 cut(s)	148, 660
FokI	GGATG	3 cut(s)	578, 707, 825
Fsp4HI	GCNGC	2 cut(s)	148, 660
FspBI	CTAG	3 cut(s)	326, 423, 579
FspI	TGCGCA	1 cut(s)	197
GlaI	GCGC	3 cut(s)	24, 26, 197
GluI	GCNGC	2 cut(s)	148, 660
GsuI	CTGGAG	1 cut(s)	784
HaeIII	GGCC	1 cut(s)	173
HapII	CCGG	2 cut(s)	156, 372
HgaI	GACGC	1 cut(s)	16
HhaI	GCGC	3 cut(s)	25, 27, 198
Hin1I	GRCGYC	1 cut(s)	47
Hin1II	CATG	4 cut(s)	94, 305, 772, 809
Hin6I	GCGC	3 cut(s)	23, 25, 196
HinP1I	GCGC	3 cut(s)	23, 25, 196
HincII	GTYRAC	3 cut(s)	351, 361, 593
HindII	GTYRAC	3 cut(s)	351, 361, 593
HinfI	GANTC	7 cut(s)	67, 129, 161, 190, 211, 772, 856
HpaII	CCGG	2 cut(s)	156, 372
HphI	GGTGA	3 cut(s)	88, 466, 653
Hpy166II	GTNNAC	5 cut(s)	96, 351, 361, 593, 865
Hpy188I	TCNGA	5 cut(s)	128, 144, 612, 625, 706
Hpy188III	TCNNGA	6 cut(s)	292, 408, 445, 563, 763, 776
Hpy8I	GTNNAC	5 cut(s)	96, 351, 361, 593, 865
Hpy99I	CGWCG	6 cut(s)	32, 49, 52, 55, 58, 61
HpyAV	CCTTC	3 cut(s)	109, 629, 804
HpyCH4III	ACNGT	3 cut(s)	355, 365, 649
HpyCH4IV	ACGT	2 cut(s)	47, 595
HpyCH4V	TGCA	2 cut(s)	782, 805
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 82, 156, 387
HpyF3I	CTNAG	3 cut(s)	182, 622, 738
HpySE526I	ACGT	2 cut(s)	47, 595
Hsp92I	GRCGYC	1 cut(s)	47
Hsp92II	CATG	4 cut(s)	94, 305, 772, 809
HspAI	GCGC	3 cut(s)	23, 25, 196
Kzo9I	GATC	2 cut(s)	178, 790
LmnI	GCTCC	4 cut(s)	155, 235, 262, 765
Lsp1109I	GCAGC	1 cut(s)	646
LweI	GCATC	3 cut(s)	739, 769, 803
MaeI	CTAG	3 cut(s)	326, 423, 579
MaeII	ACGT	2 cut(s)	47, 595
MalI	GATC	2 cut(s)	180, 792
MauBI	CGCGCGCG	1 cut(s)	23
MbiI	CCGCTC	1 cut(s)	147
MboI	GATC	2 cut(s)	178, 790
MboII	GAAGA	1 cut(s)	644
MflI	RGATCY	1 cut(s)	790
MluCI	AATT	6 cut(s)	286, 462, 469, 510, 606, 876
MlyI	GAGTC	3 cut(s)	61, 155, 220
MmeI	TCCRAC	1 cut(s)	508
MseI	TTAA	2 cut(s)	9, 732
MslI	CAYNNNNRTG	1 cut(s)	306
MspI	CCGG	2 cut(s)	156, 372
MspR9I	CCNGG	2 cut(s)	16, 259
MvaI	CCWGG	2 cut(s)	16, 259
MvnI	CGCG	4 cut(s)	23, 25, 27, 32
MwoI	GCNNNNNNNGC	4 cut(s)	29, 82, 156, 387
NdeI	CATATG	1 cut(s)	339
NdeII	GATC	2 cut(s)	178, 790
NlaIII	CATG	4 cut(s)	94, 305, 772, 809
NlaIV	GGNNCC	2 cut(s)	151, 264
NmeAIII	GCCGAG	1 cut(s)	229
NsbI	TGCGCA	1 cut(s)	197
PauI	GCGCGC	1 cut(s)	23
PcsI	WCGNNNNNNNCGW	4 cut(s)	50, 53, 56, 62
PfeI	GAWTC	4 cut(s)	129, 190, 772, 856
PflFI	GACNNNGTC	1 cut(s)	49
PkrI	GCNGC	2 cut(s)	149, 661
PleI	GAGTC	3 cut(s)	61, 155, 219
PpsI	GAGTC	3 cut(s)	61, 155, 219
Psp6I	CCWGG	2 cut(s)	14, 257
PspGI	CCWGG	2 cut(s)	14, 257
PspN4I	GGNNCC	2 cut(s)	151, 264
PsuI	RGATCY	1 cut(s)	790
PsyI	GACNNNGTC	1 cut(s)	49
PteI	GCGCGC	1 cut(s)	23
RsaI	GTAC	2 cut(s)	400, 872
RsaNI	GTAC	2 cut(s)	399, 871
RseI	CAYNNNNRTG	1 cut(s)	306
SalI	GTCGAC	1 cut(s)	349
SaqAI	TTAA	2 cut(s)	9, 732
SatI	GCNGC	2 cut(s)	148, 660
Sau3AI	GATC	2 cut(s)	178, 790
SchI	GAGTC	3 cut(s)	61, 155, 220
ScrFI	CCNGG	2 cut(s)	16, 259
SfaNI	GCATC	3 cut(s)	739, 769, 803
SfcI	CTRYAG	1 cut(s)	486
SmiMI	CAYNNNNRTG	1 cut(s)	306
Sse9I	AATT	6 cut(s)	286, 462, 469, 510, 606, 876
SsiI	CCGC	3 cut(s)	5, 32, 147
SspMI	CTAG	3 cut(s)	326, 423, 579
StyD4I	CCNGG	2 cut(s)	14, 257
StyI	CCWWGG	2 cut(s)	168, 686
TaaI	ACNGT	3 cut(s)	355, 365, 649
TaiI	ACGT	2 cut(s)	50, 598
TaqI	TCGA	3 cut(s)	65, 188, 350
TasI	AATT	6 cut(s)	286, 462, 469, 510, 606, 876
TatI	WGTACW	1 cut(s)	870
TauI	GCSGC	1 cut(s)	150
TfiI	GAWTC	4 cut(s)	129, 190, 772, 856
Tru1I	TTAA	2 cut(s)	9, 732
Tru9I	TTAA	2 cut(s)	9, 732
TscAI	CASTG	2 cut(s)	245, 370
TseI	GCWGC	1 cut(s)	659
TspDTI	ATGAA	4 cut(s)	318, 537, 582, 785
TspGWI	ACGGA	2 cut(s)	127, 240
TspRI	CASTG	2 cut(s)	245, 370
Tth111I	GACNNNGTC	1 cut(s)	49
XapI	RAATTY	2 cut(s)	510, 876
XcmI	CCANNNNNNNNNTGG	2 cut(s)	337, 524
XmiI	GTMKAC	1 cut(s)	350
XspI	CTAG	3 cut(s)	326, 423, 579
ZraI	GACGTC	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.