Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0010755

Physical Location & Seq

Genomic Coordinates Reverse (-)

81952940 .. 81955687

Gene Structure 2748 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00144030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGCGGTTAAGCCCAGGCACGCGCGTCGCGGGTCGCAAAACGACGTCGTCGTCCTCGACTCTGGTGCTGACCTTGCTCGTCATGTTCACCTTCGTCATTCTCATTCTCCTCGCCCTCGGAATCCTCTCCGTTCCGAGCGGCTCCTCCGGCGACTCGCCGAAGGCCAACGATCTCAGCTCGATTCTGCGCAACGCCGAGAGGGAAATGACGGAAGCAAGGAGCAGTGGGTCGAAGTCATCTCGTGGGAGCCAAGAGCTTTTGTTTATCACAATTTCTTGACACAGCACGAATGTGATTATCTAATCAATCTAGCCAAGCCTCATATGGAAAAATCGACAGTAGTTGACAGTGAAACTGGAAAGAGCAAAGATAGCAGGGTTCGTACAAGCTCTGGAACATTTTTGGCTAGAGGACGGGATAAGGTTATCAGGAACATTGAGAAAAAGATTGCTAATTTCACCTTTCTACCTGTAGAACACGGGGAGGGACTTCAAATTCTCCACTATGAAGTCGGACAGAAGTATGAGCCTCACTTTGACTATTTTCAGGATGAATATAACACTAGGAATGGAGGTCAACGTATAGCTACAGTTCTGATGTATCTCTCAGATGTTGAAGAAGGGGGTGAGACTGTGTTCCCTGCTGCCAAAGGGAATATAAGTTCTGTGCCTTGGTGGGATGAGCTATCCGAATGTGGGAAAAAAGGGCTTTCTGTTAAACCTAAGATGGGAGATGCTCTGCTTTTCTGGAGCATGAATCCTGATGCAACTTTAGATCCTTCAAGTTTGCATGGTGGATGCCCTGTTATACAAGTTCTTCTGTTACTGCTGTACTCGTCGAAATCTCAAGCCCAAGCTCCAGTACCTGTGCTTCCAACTGTCATTCGTAACCTAGTAAACTGGTGGACACCTGCATGGCTTGGAGATTTTGATGGACTAGTTATTGCTCTACTAATTCAAGTTTTGTATGTGAGCTATATTCTTGTTACCACTTCCACTGAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004656 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006464 GO:0006520 GO:0006575 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0018401 GO:0019471 GO:0019511 GO:0019538 GO:0019752 GO:0019798 GO:0021700 GO:0022622 GO:0030154 GO:0031543 GO:0031545 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0051213 GO:0055114 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:0140096 GO:1901564 GO:1901605 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3

Protein Analysis

335

Amino Acids

37.84

Weight (kDa)

7.79

Isoelectric Point (pI)

48.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy_3	PF13640	164 - 270	5e-15	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17720 AT4G35810 AT4G35810 AT5G66060 AT5G66060
fragaria_vesca	FvH4_1g11100
malus_domestica	MD02G1123600.v1.1 MD15G1237500.v1.1
prunus_persica	Prupe.7G174900_v2.0.a1
pyrus_communis	pycom02g09640
rosa_chinensis	RchiOBHm_Chr2g0098371
rosa_laevigata	RLG00000016795
rosa_multiflora	Rmu_sc0023758.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144030
rosa_rugosa	Rorug02G0072600 Rorug02G0072700
rosa_samantha	Rh2AG119700 Rh2BG122800 Rh2CG124400
rosa_wichuraiana	Rw2G009380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	919
AasI	GACNNNNNNGTC	1 cut(s)	50
AatII	GACGTC	1 cut(s)	48
Acc16I	TGCGCA	1 cut(s)	189
Acc36I	ACCTGC	1 cut(s)	919
AccBSI	CCGCTC	1 cut(s)	139
AccII	CGCG	3 cut(s)	23, 25, 30
AciI	CCGC	3 cut(s)	5, 30, 139
AclWI	GGATC	1 cut(s)	770
AcsI	RAATTY	1 cut(s)	495
AcyI	GRCGYC	1 cut(s)	45
AfaI	GTAC	3 cut(s)	385, 833, 864
AfiI	CCNNNNNNNGG	2 cut(s)	696, 728
AgsI	TTSAA	4 cut(s)	494, 617, 783, 959
AhlI	ACTAGT	1 cut(s)	937
AjnI	CCWGG	1 cut(s)	14
AleI	CACNNNNGTG	1 cut(s)	291
AloI	GAACNNNNNNTCC	2 cut(s)	646, 678
AluBI	AGCT	7 cut(s)	178, 257, 390, 587, 685, 857, 975
AluI	AGCT	7 cut(s)	178, 257, 390, 587, 685, 857, 975
Alw26I	GTCTC	1 cut(s)	623
AlwI	GGATC	1 cut(s)	770
AlwNI	CAGNNNCTG	1 cut(s)	866
AoxI	GGCC	1 cut(s)	163
ApeKI	GCWGC	1 cut(s)	644
ApoI	RAATTY	1 cut(s)	495
AspLEI	GCGC	2 cut(s)	25, 190
AsuHPI	GGTGA	3 cut(s)	80, 451, 638
BarI	GAAGNNNNNNTAC	2 cut(s)	855, 887
BauI	CACGAG	1 cut(s)	241
BbvI	GCAGC	1 cut(s)	631
BccI	CCATC	2 cut(s)	721, 926
BcgI	CGANNNNNNTGC	4 cut(s)	8, 42, 47, 81
BciT130I	CCWGG	1 cut(s)	16
BcoDI	GTCTC	1 cut(s)	623
BcuI	ACTAGT	1 cut(s)	937
BfaI	CTAG	5 cut(s)	311, 408, 564, 893, 938
BfmI	CTRYAG	2 cut(s)	471, 588
BfuAI	ACCTGC	1 cut(s)	919
BisI	GCNGC	2 cut(s)	140, 645
BlsI	GCNGC	2 cut(s)	141, 646
Bme1390I	CCNGG	1 cut(s)	16
BmiI	GGNNCC	2 cut(s)	143, 249
BmrFI	CCNGG	1 cut(s)	16
BmsI	GCATC	3 cut(s)	724, 754, 788
BpmI	CTGGAG	2 cut(s)	769, 843
BpuEI	CTTGAG	1 cut(s)	831
BsaHI	GRCGYC	1 cut(s)	45
BsaJI	CCNNGG	3 cut(s)	14, 116, 671
Bsc4I	CCNNNNNNNGG	2 cut(s)	696, 728
Bse1I	ACTGG	3 cut(s)	361, 860, 905
BseBI	CCWGG	1 cut(s)	16
BseDI	CCNNGG	3 cut(s)	14, 116, 671
BseGI	GGATG	3 cut(s)	556, 685, 803
BseLI	CCNNNNNNNGG	2 cut(s)	696, 728
BseMII	CTCAG	2 cut(s)	188, 621
BseNI	ACTGG	3 cut(s)	361, 860, 905
BseRI	GAGGAG	2 cut(s)	99, 134
BseXI	GCAGC	1 cut(s)	631
Bsh1236I	CGCG	3 cut(s)	23, 25, 30
BshFI	GGCC	1 cut(s)	165
BsiSI	CCGG	1 cut(s)	148
BslFI	GGGAC	1 cut(s)	501
BslI	CCNNNNNNNGG	2 cut(s)	696, 728
BsmAI	GTCTC	1 cut(s)	623
BsmFI	GGGAC	1 cut(s)	501
BsnI	GGCC	1 cut(s)	165
Bsp143I	GATC	2 cut(s)	170, 775
BspACI	CCGC	3 cut(s)	5, 30, 139
BspANI	GGCC	1 cut(s)	165
BspCNI	CTCAG	2 cut(s)	187, 620
BspFNI	CGCG	3 cut(s)	23, 25, 30
BspLI	GGNNCC	2 cut(s)	143, 249
BspMI	ACCTGC	1 cut(s)	919
BspPI	GGATC	1 cut(s)	770
BsrBI	CCGCTC	1 cut(s)	139
BsrI	ACTGG	3 cut(s)	361, 860, 905
BssECI	CCNNGG	3 cut(s)	14, 116, 671
BssMI	GATC	2 cut(s)	170, 775
BssNI	GRCGYC	1 cut(s)	45
BssSI	CACGAG	1 cut(s)	241
BssT1I	CCWWGG	1 cut(s)	671
Bst2BI	CACGAG	1 cut(s)	241
Bst2UI	CCWGG	1 cut(s)	16
Bst4CI	ACNGT	5 cut(s)	340, 350, 592, 634, 880
BstACI	GRCGYC	1 cut(s)	45
BstC8I	GCNNGC	1 cut(s)	21
BstDEI	CTNAG	3 cut(s)	174, 607, 723
BstF5I	GGATG	3 cut(s)	556, 685, 803
BstFNI	CGCG	3 cut(s)	23, 25, 30
BstHHI	GCGC	2 cut(s)	25, 190
BstKTI	GATC	2 cut(s)	173, 778
BstMAI	GTCTC	1 cut(s)	623
BstMBI	GATC	2 cut(s)	170, 775
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 148, 372
BstNI	CCWGG	1 cut(s)	16
BstSCI	CCNGG	1 cut(s)	14
BstSFI	CTRYAG	2 cut(s)	471, 588
BstUI	CGCG	3 cut(s)	23, 25, 30
BstV1I	GCAGC	1 cut(s)	631
BstX2I	RGATCY	1 cut(s)	775
BstYI	RGATCY	1 cut(s)	775
BsuRI	GGCC	1 cut(s)	165
BtsCI	GGATG	3 cut(s)	556, 685, 803
BtsI	GCAGTG	1 cut(s)	230
BtsIMutI	CAGTG	3 cut(s)	230, 355, 996
BveI	ACCTGC	1 cut(s)	919
Cac8I	GCNNGC	1 cut(s)	21
CaiI	CAGNNNCTG	1 cut(s)	866
CfoI	GCGC	2 cut(s)	25, 190
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	3 cut(s)	384, 832, 863
CviAII	CATG	4 cut(s)	83, 754, 791, 915
CviQI	GTAC	3 cut(s)	384, 832, 863
DdeI	CTNAG	3 cut(s)	174, 607, 723
DpnI	GATC	2 cut(s)	172, 777
DpnII	GATC	2 cut(s)	170, 775
DrdI	GACNNNNNNGTC	1 cut(s)	50
DseDI	GACNNNNNNGTC	1 cut(s)	50
Eco130I	CCWWGG	1 cut(s)	671
EcoRII	CCWGG	1 cut(s)	14
EcoT14I	CCWWGG	1 cut(s)	671
ErhI	CCWWGG	1 cut(s)	671
FaeI	CATG	4 cut(s)	86, 757, 794, 918
FaqI	GGGAC	1 cut(s)	501
FatI	CATG	4 cut(s)	82, 753, 790, 914
FauI	CCCGC	1 cut(s)	23
FauNDI	CATATG	1 cut(s)	324
Fnu4HI	GCNGC	2 cut(s)	140, 645
FokI	GGATG	3 cut(s)	563, 692, 810
Fsp4HI	GCNGC	2 cut(s)	140, 645
FspBI	CTAG	5 cut(s)	311, 408, 564, 893, 938
FspI	TGCGCA	1 cut(s)	189
GlaI	GCGC	2 cut(s)	24, 189
GluI	GCNGC	2 cut(s)	140, 645
GsuI	CTGGAG	2 cut(s)	769, 843
HaeIII	GGCC	1 cut(s)	165
HapII	CCGG	1 cut(s)	148
HgaI	GACGC	1 cut(s)	14
HhaI	GCGC	2 cut(s)	25, 190
Hin1I	GRCGYC	1 cut(s)	45
Hin1II	CATG	4 cut(s)	86, 757, 794, 918
Hin6I	GCGC	2 cut(s)	23, 188
HinP1I	GCGC	2 cut(s)	23, 188
HincII	GTYRAC	2 cut(s)	346, 578
HindII	GTYRAC	2 cut(s)	346, 578
HinfI	GANTC	5 cut(s)	59, 121, 153, 182, 757
HpaII	CCGG	1 cut(s)	148
HphI	GGTGA	3 cut(s)	80, 451, 638
Hpy166II	GTNNAC	5 cut(s)	88, 346, 578, 898, 906
Hpy188I	TCNGA	6 cut(s)	120, 136, 515, 597, 610, 691
Hpy188III	TCNNGA	6 cut(s)	277, 393, 430, 548, 748, 761
Hpy8I	GTNNAC	5 cut(s)	88, 346, 578, 898, 906
Hpy99I	CGWCG	5 cut(s)	30, 47, 50, 53, 841
HpyAV	CCTTC	4 cut(s)	101, 155, 614, 789
HpyCH4III	ACNGT	5 cut(s)	340, 350, 592, 634, 880
HpyCH4IV	ACGT	2 cut(s)	45, 580
HpyCH4V	TGCA	3 cut(s)	767, 790, 914
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 148, 372
HpyF3I	CTNAG	3 cut(s)	174, 607, 723
HpySE526I	ACGT	2 cut(s)	45, 580
Hsp92I	GRCGYC	1 cut(s)	45
Hsp92II	CATG	4 cut(s)	86, 757, 794, 918
HspAI	GCGC	2 cut(s)	23, 188
Kzo9I	GATC	2 cut(s)	170, 775
LmnI	GCTCC	5 cut(s)	147, 220, 247, 750, 862
Lsp1109I	GCAGC	1 cut(s)	631
LweI	GCATC	3 cut(s)	724, 754, 788
MaeI	CTAG	5 cut(s)	311, 408, 564, 893, 938
MaeII	ACGT	2 cut(s)	45, 580
MaeIII	GTNAC	3 cut(s)	822, 887, 985
MalI	GATC	2 cut(s)	172, 777
MbiI	CCGCTC	1 cut(s)	139
MboI	GATC	2 cut(s)	170, 775
MboII	GAAGA	2 cut(s)	629, 809
MflI	RGATCY	1 cut(s)	775
MluCI	AATT	4 cut(s)	271, 454, 495, 954
MlyI	GAGTC	2 cut(s)	53, 147
MmeI	TCCRAC	2 cut(s)	493, 899
MseI	TTAA	2 cut(s)	9, 717
MslI	CAYNNNNRTG	2 cut(s)	291, 913
MspI	CCGG	1 cut(s)	148
MspR9I	CCNGG	1 cut(s)	16
MvaI	CCWGG	1 cut(s)	16
MvnI	CGCG	3 cut(s)	23, 25, 30
MwoI	GCNNNNNNNGC	3 cut(s)	74, 148, 372
NdeI	CATATG	1 cut(s)	324
NdeII	GATC	2 cut(s)	170, 775
NlaIII	CATG	4 cut(s)	86, 757, 794, 918
NlaIV	GGNNCC	2 cut(s)	143, 249
NmeAIII	GCCGAG	1 cut(s)	221
NsbI	TGCGCA	1 cut(s)	189
OliI	CACNNNNGTG	1 cut(s)	291
PaqCI	CACCTGC	1 cut(s)	919
PcsI	WCGNNNNNNNCGW	2 cut(s)	48, 54
PfeI	GAWTC	3 cut(s)	121, 182, 757
PflFI	GACNNNGTC	1 cut(s)	47
PkrI	GCNGC	2 cut(s)	141, 646
PleI	GAGTC	2 cut(s)	53, 147
PpsI	GAGTC	2 cut(s)	53, 147
Psp6I	CCWGG	1 cut(s)	14
PspGI	CCWGG	1 cut(s)	14
PspN4I	GGNNCC	2 cut(s)	143, 249
PstNI	CAGNNNCTG	1 cut(s)	866
PsuI	RGATCY	1 cut(s)	775
PsyI	GACNNNGTC	1 cut(s)	47
RsaI	GTAC	3 cut(s)	385, 833, 864
RsaNI	GTAC	3 cut(s)	384, 832, 863
RseI	CAYNNNNRTG	2 cut(s)	291, 913
SaqAI	TTAA	2 cut(s)	9, 717
SatI	GCNGC	2 cut(s)	140, 645
Sau3AI	GATC	2 cut(s)	170, 775
SchI	GAGTC	2 cut(s)	53, 147
ScrFI	CCNGG	1 cut(s)	16
SfaNI	GCATC	3 cut(s)	724, 754, 788
SfcI	CTRYAG	2 cut(s)	471, 588
SmiMI	CAYNNNNRTG	2 cut(s)	291, 913
SmlI	CTYRAG	1 cut(s)	846
SmoI	CTYRAG	1 cut(s)	846
SpeI	ACTAGT	1 cut(s)	937
Sse9I	AATT	4 cut(s)	271, 454, 495, 954
SsiI	CCGC	3 cut(s)	5, 30, 139
SspMI	CTAG	5 cut(s)	311, 408, 564, 893, 938
StyD4I	CCNGG	1 cut(s)	14
StyI	CCWWGG	1 cut(s)	671
TaaI	ACNGT	5 cut(s)	340, 350, 592, 634, 880
TaiI	ACGT	2 cut(s)	48, 583
TaqI	TCGA	5 cut(s)	57, 180, 231, 335, 839
TasI	AATT	4 cut(s)	271, 454, 495, 954
TatI	WGTACW	1 cut(s)	831
TauI	GCSGC	1 cut(s)	142
TfiI	GAWTC	3 cut(s)	121, 182, 757
Tru1I	TTAA	2 cut(s)	9, 717
Tru9I	TTAA	2 cut(s)	9, 717
TscAI	CASTG	3 cut(s)	230, 355, 1003
TseI	GCWGC	1 cut(s)	644
TspDTI	ATGAA	3 cut(s)	522, 567, 770
TspGWI	ACGGA	2 cut(s)	119, 225
TspRI	CASTG	3 cut(s)	230, 355, 1003
Tth111I	GACNNNGTC	1 cut(s)	47
XapI	RAATTY	1 cut(s)	495
XcmI	CCANNNNNNNNNTGG	1 cut(s)	322
XspI	CTAG	5 cut(s)	311, 408, 564, 893, 938
ZraI	GACGTC	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.