Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010755

Physical Location & Seq

Genomic Coordinates Reverse (-)

5763675 .. 5791171

Gene Structure 27497 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0072700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGGCTATAGAGATTGAGCAACCCTCTTCTTCTGTTGAGCTATCAAAAATAGCTGTTTCTGATACTCATGGGGAAGACTCTCCATATTTTGCAGGCTGGAAAGCATACGATGAAAACCCTTACGATGAATCAAGTAACGCTTCTGGAGTTATACAGATGGGACTTGCAGAGAATCAAGTTTCATTTGATTTGGTGGAAGAGTACCTGGAACAACATCCAGAAGCTTCCAACTTGGGATCAAAAGGGTTTAGAGAAAATGCCTTGTTTCAAGACTACCATGGCCTTTTGTCTTTCAGAAAGGCAATGGCAAGTTTCATGGAGCAAATCAGAGGAGGAAGAGCCAAGTTTGACCCTAGTAGGATAGTCCTCACTGCTGGCGCAACCGCAGCGAATGAGCTGTTGACTTTCATTCTTGCTGATCCTGGTGATGCTTTGCTAGTTCCAACCCCATACTACCCAGGATTTGACAGAGACTTGAGGTGGAGGACCGGTGTGAATATTGTACCAATCCATTGCGACAGCTCAAACAATTTCCAGATTACTCCTCAAGCTTTAGAAGCAGCATATAGTGAAGCAGAAGCCAAGAACATGAAAGTGAGAGGGGTTTTAATTACAAATCCATCCAACCCATTAGGTGCAACAATCCAAAGGGTAGTCCTTCAGCAGATTCTTGATTTTGTCACCAAAAAGAACATCCATCTTGTTTCTGATGAAATCTACTCGGGATCAGCCTTCTCATCATCGAAATTCATAAGCATTGCTGAAATTCTTGAAGACAGGAAGTACAAAGATTCAGAAAGAGTTCACATTGTTTATAGTCTTTCCAAAGACCTTGGCCTCCCTGGTTTTAGAGTTGGCACCGTATACTCATACAATGACAAGGTTGTAACAACAGCAAGAAGAATGTCTAGCTTCACTTTAATATCTTCTCAAACACAGCATCTCTTGGCTTCCTTGCTATCCAACAAGGAATTCACTGAAAAATACATAAAGACAAATAGAGAGAGGCTGAGGAAGAGATATGATATGATCATTGAAGGCCTGAAGAGCACCGGAATTGAGTGTTTGAAGGGTAATGCCGGGTTGTTTTGCTGGATGAATTTGAGTCCATTCTTGGACACACCAACAAGAGAAGGTGAACTGGCTCTTTGGAATTCTATGGTGCATGACGTGAAGCTGAATATCTCACCCGGCTCTTCTTGCCATTGCTCTGAACCAGGATGGTTCCGGGTATGTTTTGCTAACATGAGTGAGCAAACTCTTGAAGTAGCAATGAATAGAATACATGATTTCATGGAACAAAGAGAGAGAAGTAGGAATCCAGTTTCCTTTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004656 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006464 GO:0006520 GO:0006575 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0018401 GO:0019471 GO:0019511 GO:0019538 GO:0019752 GO:0019798 GO:0021700 GO:0022622 GO:0030154 GO:0031543 GO:0031545 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0051213 GO:0055114 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:0140096 GO:1901564 GO:1901605 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3

Protein Analysis

445

Amino Acids

49.95

Weight (kDa)

5.68

Isoelectric Point (pI)

52.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	51 - 428	7.3e-98	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17720 AT4G35810 AT4G35810 AT5G66060 AT5G66060
fragaria_vesca	FvH4_1g11100
malus_domestica	MD02G1123600.v1.1 MD15G1237500.v1.1
prunus_persica	Prupe.7G174900_v2.0.a1
pyrus_communis	pycom02g09640
rosa_chinensis	RchiOBHm_Chr2g0098371
rosa_laevigata	RLG00000016795
rosa_multiflora	Rmu_sc0023758.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144030
rosa_rugosa	Rorug02G0072600 Rorug02G0072700
rosa_samantha	Rh2AG119700 Rh2BG122800 Rh2CG124400
rosa_wichuraiana	Rw2G009380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	857
AccI	GTMKAC	1 cut(s)	864
AciI	CCGC	1 cut(s)	384
AclWI	GGATC	3 cut(s)	244, 413, 733
AcsI	RAATTY	5 cut(s)	746, 765, 971, 1099, 1153
AcuI	CTGAAG	2 cut(s)	644, 1064
AfaI	GTAC	3 cut(s)	203, 504, 785
AgeI	ACCGGT	1 cut(s)	488
AgsI	TTSAA	5 cut(s)	269, 773, 1037, 1069, 1265
AjiI	CACGTC	1 cut(s)	1171
AjnI	CCWGG	5 cut(s)	204, 421, 457, 841, 1216
AjuI	GAANNNNNNNTTGG	2 cut(s)	956, 988
AluBI	AGCT	8 cut(s)	40, 53, 224, 397, 522, 551, 912, 1177
AluI	AGCT	8 cut(s)	40, 53, 224, 397, 522, 551, 912, 1177
Alw21I	GWGCWC	1 cut(s)	1052
Alw26I	GTCTC	1 cut(s)	465
AlwI	GGATC	3 cut(s)	244, 413, 733
Ama87I	CYCGRG	1 cut(s)	721
AoxI	GGCC	3 cut(s)	280, 835, 1039
ApeKI	GCWGC	2 cut(s)	386, 560
ApoI	RAATTY	5 cut(s)	746, 765, 971, 1099, 1153
AsiGI	ACCGGT	1 cut(s)	488
Asp700I	GAANNNNTTC	1 cut(s)	801
AspLEI	GCGC	1 cut(s)	380
AspS9I	GGNCC	1 cut(s)	486
AsuC2I	CCSGG	3 cut(s)	1081, 1191, 1229
AsuHPI	GGTGA	4 cut(s)	437, 673, 1148, 1179
AvaI	CYCGRG	1 cut(s)	721
AvaII	GGWCC	1 cut(s)	486
BanI	GGYRCC	1 cut(s)	857
BbsI	GAAGAC	2 cut(s)	81, 780
Bbv12I	GWGCWC	1 cut(s)	1052
BbvCI	CCTCAGC	1 cut(s)	1010
BbvI	GCAGC	2 cut(s)	398, 572
BccI	CCATC	4 cut(s)	151, 628, 705, 1215
BciT130I	CCWGG	5 cut(s)	206, 423, 459, 843, 1218
BclI	TGATCA	1 cut(s)	1029
BcnI	CCSGG	3 cut(s)	1081, 1191, 1229
BcoDI	GTCTC	1 cut(s)	465
BfaI	CTAG	3 cut(s)	354, 437, 909
BfmI	CTRYAG	1 cut(s)	6
BisI	GCNGC	2 cut(s)	387, 561
BlsI	GCNGC	2 cut(s)	388, 562
Bme1390I	CCNGG	8 cut(s)	206, 423, 459, 843, 1081, 1191, 1218, 1229
Bme18I	GGWCC	1 cut(s)	486
BmeT110I	CYCGRG	1 cut(s)	721
BmgBI	CACGTC	1 cut(s)	1171
BmgT120I	GGNCC	1 cut(s)	486
BmiI	GGNNCC	2 cut(s)	859, 1226
BmrFI	CCNGG	8 cut(s)	206, 423, 459, 843, 1081, 1191, 1218, 1229
BmsI	GCATC	2 cut(s)	418, 949
BpiI	GAAGAC	2 cut(s)	81, 780
BplI	GAGNNNNNCTC	2 cut(s)	8, 40
BpmI	CTGGAG	1 cut(s)	165
Bpu10I	CCTNAGC	1 cut(s)	1010
BpuEI	CTTGAG	2 cut(s)	496, 531
BpuMI	CCSGG	3 cut(s)	1081, 1191, 1229
BsaJI	CCNNGG	4 cut(s)	277, 457, 832, 841
BsaWI	WCCGGW	2 cut(s)	488, 1052
BsaXI	ACNNNNNCTCC	2 cut(s)	475, 505
Bse118I	RCCGGY	1 cut(s)	488
Bse1I	ACTGG	2 cut(s)	1146, 1322
Bse3DI	GCAATG	5 cut(s)	309, 511, 756, 1204, 1278
BseBI	CCWGG	5 cut(s)	206, 423, 459, 843, 1218
BseDI	CCNNGG	4 cut(s)	277, 457, 832, 841
BseGI	GGATG	5 cut(s)	214, 620, 693, 1101, 1226
BseMI	GCAATG	5 cut(s)	309, 511, 756, 1204, 1278
BseMII	CTCAG	1 cut(s)	1001
BseNI	ACTGG	2 cut(s)	1146, 1322
BseRI	GAGGAG	2 cut(s)	345, 534
BseXI	GCAGC	2 cut(s)	398, 572
BshFI	GGCC	3 cut(s)	282, 837, 1041
BshNI	GGYRCC	1 cut(s)	857
BshTI	ACCGGT	1 cut(s)	488
BsiHKAI	GWGCWC	1 cut(s)	1052
BsiHKCI	CYCGRG	1 cut(s)	721
BsiSI	CCGG	5 cut(s)	489, 1053, 1080, 1191, 1228
BslFI	GGGAC	1 cut(s)	174
BsmAI	GTCTC	1 cut(s)	465
BsmFI	GGGAC	1 cut(s)	174
BsnI	GGCC	3 cut(s)	282, 837, 1041
BsoBI	CYCGRG	1 cut(s)	721
Bsp1286I	GDGCHC	1 cut(s)	1052
Bsp143I	GATC	4 cut(s)	236, 418, 725, 1029
Bsp19I	CCATGG	1 cut(s)	277
BspACI	CCGC	1 cut(s)	384
BspANI	GGCC	3 cut(s)	282, 837, 1041
BspCNI	CTCAG	1 cut(s)	1002
BspLI	GGNNCC	2 cut(s)	859, 1226
BspPI	GGATC	3 cut(s)	244, 413, 733
BspQI	GCTCTTC	3 cut(s)	331, 1040, 1201
BspT107I	GGYRCC	1 cut(s)	857
BsrDI	GCAATG	5 cut(s)	309, 511, 756, 1204, 1278
BsrFI	RCCGGY	1 cut(s)	488
BsrI	ACTGG	2 cut(s)	1146, 1322
BssAI	RCCGGY	1 cut(s)	488
BssECI	CCNNGG	4 cut(s)	277, 457, 832, 841
BssMI	GATC	4 cut(s)	236, 418, 725, 1029
BssNAI	GTATAC	1 cut(s)	865
BssT1I	CCWWGG	2 cut(s)	277, 832
Bst1107I	GTATAC	1 cut(s)	865
Bst2UI	CCWGG	5 cut(s)	206, 423, 459, 843, 1218
Bst4CI	ACNGT	1 cut(s)	862
Bst6I	CTCTTC	6 cut(s)	31, 192, 331, 1010, 1040, 1201
BstC8I	GCNNGC	2 cut(s)	94, 376
BstDEI	CTNAG	1 cut(s)	1010
BstDSI	CCRYGG	1 cut(s)	277
BstF5I	GGATG	5 cut(s)	214, 620, 693, 1101, 1226
BstHHI	GCGC	1 cut(s)	380
BstKTI	GATC	4 cut(s)	239, 421, 728, 1032
BstMAI	GTCTC	1 cut(s)	465
BstMBI	GATC	4 cut(s)	236, 418, 725, 1029
BstMWI	GCNNNNNNNGC	4 cut(s)	386, 557, 1047, 1200
BstNI	CCWGG	5 cut(s)	206, 423, 459, 843, 1218
BstSCI	CCNGG	8 cut(s)	204, 421, 457, 841, 1079, 1189, 1216, 1227
BstSFI	CTRYAG	1 cut(s)	6
BstV1I	GCAGC	2 cut(s)	398, 572
BstV2I	GAAGAC	2 cut(s)	81, 780
BstZ17I	GTATAC	1 cut(s)	865
BsuRI	GGCC	3 cut(s)	282, 837, 1041
BtgI	CCRYGG	1 cut(s)	277
BtrI	CACGTC	1 cut(s)	1171
BtsCI	GGATG	5 cut(s)	214, 620, 693, 1101, 1226
BtsI	GCAGTG	1 cut(s)	369
BtsIMutI	CAGTG	2 cut(s)	369, 975
Cac8I	GCNNGC	2 cut(s)	94, 376
CfoI	GCGC	1 cut(s)	380
Cfr10I	RCCGGY	1 cut(s)	488
Cfr13I	GGNCC	1 cut(s)	486
Csp6I	GTAC	3 cut(s)	202, 503, 784
CspAI	ACCGGT	1 cut(s)	488
CviAII	CATG	8 cut(s)	68, 278, 316, 589, 1166, 1246, 1286, 1294
CviQI	GTAC	3 cut(s)	202, 503, 784
DdeI	CTNAG	1 cut(s)	1010
DpnI	GATC	4 cut(s)	238, 420, 727, 1031
DpnII	GATC	4 cut(s)	236, 418, 725, 1029
Eam1104I	CTCTTC	6 cut(s)	31, 192, 331, 1010, 1040, 1201
EarI	CTCTTC	6 cut(s)	31, 192, 331, 1010, 1040, 1201
Eco130I	CCWWGG	2 cut(s)	277, 832
Eco147I	AGGCCT	1 cut(s)	1041
Eco47I	GGWCC	1 cut(s)	486
Eco57I	CTGAAG	2 cut(s)	644, 1064
Eco88I	CYCGRG	1 cut(s)	721
EcoRI	GAATTC	2 cut(s)	971, 1153
EcoRII	CCWGG	5 cut(s)	204, 421, 457, 841, 1216
EcoT14I	CCWWGG	2 cut(s)	277, 832
ErhI	CCWWGG	2 cut(s)	277, 832
FaeI	CATG	8 cut(s)	71, 281, 319, 592, 1169, 1249, 1289, 1297
FalI	AAGNNNNNCTT	2 cut(s)	124, 156
FaqI	GGGAC	1 cut(s)	174
FatI	CATG	8 cut(s)	67, 277, 315, 588, 1165, 1245, 1285, 1293
FbaI	TGATCA	1 cut(s)	1029
FblI	GTMKAC	1 cut(s)	864
Fnu4HI	GCNGC	2 cut(s)	387, 561
FokI	GGATG	5 cut(s)	201, 607, 680, 1108, 1233
Fsp4HI	GCNGC	2 cut(s)	387, 561
FspBI	CTAG	3 cut(s)	354, 437, 909
GlaI	GCGC	1 cut(s)	379
GluI	GCNGC	2 cut(s)	387, 561
GsuI	CTGGAG	1 cut(s)	165
HaeIII	GGCC	3 cut(s)	282, 837, 1041
HapII	CCGG	5 cut(s)	489, 1053, 1080, 1191, 1228
HhaI	GCGC	1 cut(s)	380
Hin1II	CATG	8 cut(s)	71, 281, 319, 592, 1169, 1249, 1289, 1297
Hin6I	GCGC	1 cut(s)	378
HinP1I	GCGC	1 cut(s)	378
HincII	GTYRAC	1 cut(s)	402
HindII	GTYRAC	1 cut(s)	402
HindIII	AAGCTT	2 cut(s)	222, 549
HinfI	GANTC	7 cut(s)	77, 128, 172, 667, 791, 1105, 1318
HpaII	CCGG	5 cut(s)	489, 1053, 1080, 1191, 1228
HphI	GGTGA	4 cut(s)	437, 673, 1148, 1179
Hpy166II	GTNNAC	4 cut(s)	402, 805, 865, 1139
Hpy188I	TCNGA	6 cut(s)	61, 296, 329, 709, 796, 1213
Hpy188III	TCNNGA	8 cut(s)	144, 218, 269, 535, 671, 723, 770, 1262
Hpy8I	GTNNAC	4 cut(s)	402, 805, 865, 1139
HpyAV	CCTTC	5 cut(s)	668, 742, 1031, 1063, 1127
HpyCH4III	ACNGT	1 cut(s)	862
HpyCH4IV	ACGT	1 cut(s)	1170
HpyCH4V	TGCA	4 cut(s)	92, 167, 638, 1165
HpyF10VI	GCNNNNNNNGC	4 cut(s)	386, 557, 1047, 1200
HpyF3I	CTNAG	1 cut(s)	1010
HpySE526I	ACGT	1 cut(s)	1170
Hsp92II	CATG	8 cut(s)	71, 281, 319, 592, 1169, 1249, 1289, 1297
HspAI	GCGC	1 cut(s)	378
Ksp22I	TGATCA	1 cut(s)	1029
Kzo9I	GATC	4 cut(s)	236, 418, 725, 1029
LguI	GCTCTTC	3 cut(s)	331, 1040, 1201
LmnI	GCTCC	1 cut(s)	319
Lsp1109I	GCAGC	2 cut(s)	398, 572
LweI	GCATC	2 cut(s)	418, 949
MaeI	CTAG	3 cut(s)	354, 437, 909
MaeII	ACGT	1 cut(s)	1170
MaeIII	GTNAC	3 cut(s)	134, 679, 886
MalI	GATC	4 cut(s)	238, 420, 727, 1031
MboI	GATC	4 cut(s)	236, 418, 725, 1029
MhlI	GDGCHC	1 cut(s)	1052
MluCI	AATT	8 cut(s)	529, 609, 746, 765, 971, 1056, 1099, 1153
MlyI	GAGTC	2 cut(s)	71, 1114
MmeI	TCCRAC	4 cut(s)	252, 467, 648, 987
MroXI	GAANNNNTTC	1 cut(s)	801
MseI	TTAA	3 cut(s)	608, 920, 1336
MslI	CAYNNNNRTG	1 cut(s)	593
MspI	CCGG	5 cut(s)	489, 1053, 1080, 1191, 1228
MspR9I	CCNGG	8 cut(s)	206, 423, 459, 843, 1081, 1191, 1218, 1229
MvaI	CCWGG	5 cut(s)	206, 423, 459, 843, 1218
MwoI	GCNNNNNNNGC	4 cut(s)	386, 557, 1047, 1200
NciI	CCSGG	3 cut(s)	1081, 1191, 1229
NcoI	CCATGG	1 cut(s)	277
NdeII	GATC	4 cut(s)	236, 418, 725, 1029
NlaIII	CATG	8 cut(s)	71, 281, 319, 592, 1169, 1249, 1289, 1297
NlaIV	GGNNCC	2 cut(s)	859, 1226
NmuCI	GTSAC	1 cut(s)	679
PceI	AGGCCT	1 cut(s)	1041
PciSI	GCTCTTC	3 cut(s)	331, 1040, 1201
PdmI	GAANNNNTTC	1 cut(s)	801
PfeI	GAWTC	5 cut(s)	128, 172, 667, 791, 1318
PinAI	ACCGGT	1 cut(s)	488
PkrI	GCNGC	2 cut(s)	388, 562
PleI	GAGTC	2 cut(s)	71, 1113
PpsI	GAGTC	2 cut(s)	71, 1113
Psp6I	CCWGG	5 cut(s)	204, 421, 457, 841, 1216
PspGI	CCWGG	5 cut(s)	204, 421, 457, 841, 1216
PspN4I	GGNNCC	2 cut(s)	859, 1226
PspPI	GGNCC	1 cut(s)	486
RsaI	GTAC	3 cut(s)	203, 504, 785
RsaNI	GTAC	3 cut(s)	202, 503, 784
RseI	CAYNNNNRTG	1 cut(s)	593
SapI	GCTCTTC	3 cut(s)	331, 1040, 1201
SaqAI	TTAA	3 cut(s)	608, 920, 1336
SatI	GCNGC	2 cut(s)	387, 561
Sau3AI	GATC	4 cut(s)	236, 418, 725, 1029
Sau96I	GGNCC	1 cut(s)	486
SchI	GAGTC	2 cut(s)	71, 1114
ScrFI	CCNGG	8 cut(s)	206, 423, 459, 843, 1081, 1191, 1218, 1229
SduI	GDGCHC	1 cut(s)	1052
SfaNI	GCATC	2 cut(s)	418, 949
SfcI	CTRYAG	1 cut(s)	6
SinI	GGWCC	1 cut(s)	486
SmiMI	CAYNNNNRTG	1 cut(s)	593
SmlI	CTYRAG	2 cut(s)	475, 546
SmoI	CTYRAG	2 cut(s)	475, 546
Sse9I	AATT	8 cut(s)	529, 609, 746, 765, 971, 1056, 1099, 1153
SseBI	AGGCCT	1 cut(s)	1041
SsiI	CCGC	1 cut(s)	384
SspI	AATATT	1 cut(s)	499
SspMI	CTAG	3 cut(s)	354, 437, 909
StuI	AGGCCT	1 cut(s)	1041
StyD4I	CCNGG	8 cut(s)	204, 421, 457, 841, 1079, 1189, 1216, 1227
StyI	CCWWGG	2 cut(s)	277, 832
TaaI	ACNGT	1 cut(s)	862
TaiI	ACGT	1 cut(s)	1173
TaqI	TCGA	1 cut(s)	743
TasI	AATT	8 cut(s)	529, 609, 746, 765, 971, 1056, 1099, 1153
TatI	WGTACW	1 cut(s)	783
TfiI	GAWTC	5 cut(s)	128, 172, 667, 791, 1318
Tru1I	TTAA	3 cut(s)	608, 920, 1336
Tru9I	TTAA	3 cut(s)	608, 920, 1336
TscAI	CASTG	2 cut(s)	376, 982
TseFI	GTSAC	1 cut(s)	679
TseI	GCWGC	2 cut(s)	386, 560
Tsp45I	GTSAC	1 cut(s)	679
TspRI	CASTG	2 cut(s)	376, 982
VpaK11BI	GGWCC	1 cut(s)	486
XapI	RAATTY	5 cut(s)	746, 765, 971, 1099, 1153
XmiI	GTMKAC	1 cut(s)	864
XmnI	GAANNNNTTC	1 cut(s)	801
XspI	CTAG	3 cut(s)	354, 437, 909

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.