Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010755

Physical Location & Seq

Genomic Coordinates Forward (+)

26419378 .. 26421642

Gene Structure 2265 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G66060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGATGGCGAGACCGAGGAATCATCGTCCTTCAGCTCGGAAATCCTCGCATTCAACGCTCGTCTTCGCCGTATTGATCATGTCCACTTTCGTGATTTTGATTCTTCTCGCCTTTGGAATTCTCTCGGTGCCCAGCAACAATGCCGGATCCTCAAAAGCCAATGATCTCACTTCTATTGTCCGAAAAACACTTCAGAGAAGTGGCGAAGATGATTCAAAGAACGAGCGTTGGGTTGAAATAATCTCTTGGGAACCCAGAGCTTCTGTTTACCACAATTTCTTGACAAAGGAGGAATGCAAGTATCTAATAGAGCTAGCTAAACCGCATATGGAGAAATCAACTGTTGTCGACGAGAAGACTGGAAAGAGCACAGATAGCAGGGTGCGAACGAGTTCAGGGACATTTCTCGCAAGAGGGCGTGACAAAACTATCCGTGAAATTGAGAAAAGGATATCAGATTTTACATTCATACCAGTTGAGCATGGGGAAGGTCTTCAAGTTCTGCACTATGAGATTGGGCAAAAGTATGAGCCTCATTACGACTACTTCATGGATGAGTATAACACTAGGAATGGGGGACAGCGGATAGCCACAGTTCTCATGTACCTATCAGATGTTGAGGAGGGGGGTGAAACAGTGTTTCCTGCAGCCAAGGGAAACTATAGCGCAGTGCCATGGTGGAATGAGTTGTCAGAGTGTGGGAAAGGAGGGTTGTCTGTGAAACCAAAGATGGGAGATGCATTGCTTTTCTGGAGCATGACGCCTGATGCGACGCTAGACCCATCTAGTCTTCATGGTGGGTGTGCTGTTATAAAAGGGAATAAGTGGTCGTCCACAAAGTGGTTGCGTGTACACGAGTACAAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004656 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006464 GO:0006520 GO:0006575 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0018401 GO:0019471 GO:0019511 GO:0019538 GO:0019752 GO:0019798 GO:0021700 GO:0022622 GO:0030154 GO:0031543 GO:0031545 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0051213 GO:0055114 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:0140096 GO:1901564 GO:1901605 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3

Protein Analysis

289

Amino Acids

32.6

Weight (kDa)

8.6

Isoelectric Point (pI)

47.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	163 - 283	4.5e-08	2OG-Fe(II) oxygenase superfamily
2OG-FeII_Oxy_3	PF13640	165 - 283	1e-17	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17720 AT4G35810 AT4G35810 AT5G66060 AT5G66060
fragaria_vesca	FvH4_1g11100
malus_domestica	MD02G1123600.v1.1 MD15G1237500.v1.1
prunus_persica	Prupe.7G174900_v2.0.a1
pyrus_communis	pycom02g09640
rosa_chinensis	RchiOBHm_Chr2g0098371
rosa_laevigata	RLG00000016795
rosa_multiflora	Rmu_sc0023758.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144030
rosa_rugosa	Rorug02G0072600 Rorug02G0072700
rosa_samantha	Rh2AG119700 Rh2BG122800 Rh2CG124400
rosa_wichuraiana	Rw2G009380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	812
AccB1I	GGYRCC	1 cut(s)	127
AccB7I	CCANNNNNTGG	1 cut(s)	840
AccI	GTMKAC	1 cut(s)	348
AciI	CCGC	2 cut(s)	323, 583
AclWI	GGATC	2 cut(s)	141, 154
AcsI	RAATTY	1 cut(s)	117
AcuI	CTGAAG	2 cut(s)	15, 176
AcyI	GRCGYC	1 cut(s)	761
AdeI	CACNNNGTG	1 cut(s)	840
AfaI	GTAC	3 cut(s)	605, 852, 860
AfiI	CCNNNNNNNGG	2 cut(s)	731, 840
AgsI	TTSAA	4 cut(s)	54, 216, 236, 497
AleI	CACNNNNGTG	1 cut(s)	89
AluBI	AGCT	4 cut(s)	35, 260, 313, 317
AluI	AGCT	4 cut(s)	35, 260, 313, 317
Alw21I	GWGCWC	1 cut(s)	371
Alw26I	GTCTC	1 cut(s)	4
AlwI	GGATC	2 cut(s)	141, 154
ApeKI	GCWGC	1 cut(s)	647
ApoI	RAATTY	1 cut(s)	117
Asp700I	GAANNNNTTC	2 cut(s)	391, 492
AspLEI	GCGC	1 cut(s)	668
AsuHPI	GGTGA	1 cut(s)	641
AsuNHI	GCTAGC	1 cut(s)	313
BaeGI	GKGCMC	1 cut(s)	132
BamHI	GGATCC	1 cut(s)	146
BanI	GGYRCC	1 cut(s)	127
BauI	CACGAG	1 cut(s)	854
BbsI	GAAGAC	4 cut(s)	55, 362, 485, 782
Bbv12I	GWGCWC	1 cut(s)	371
BbvI	GCAGC	1 cut(s)	659
BccI	CCATC	2 cut(s)	724, 790
BceAI	ACGGC	1 cut(s)	53
BclI	TGATCA	1 cut(s)	75
BcoDI	GTCTC	1 cut(s)	4
BfaI	CTAG	4 cut(s)	314, 567, 776, 786
BfmI	CTRYAG	2 cut(s)	645, 661
BisI	GCNGC	1 cut(s)	648
BlsI	GCNGC	1 cut(s)	649
BmiI	GGNNCC	3 cut(s)	129, 148, 252
BmsI	GCATC	2 cut(s)	727, 757
BmtI	GCTAGC	1 cut(s)	317
BpiI	GAAGAC	4 cut(s)	55, 362, 485, 782
BpmI	CTGGAG	1 cut(s)	772
BsaHI	GRCGYC	1 cut(s)	761
BsaI	GGTCTC	1 cut(s)	4
BsaJI	CCNNGG	3 cut(s)	14, 651, 674
Bsc4I	CCNNNNNNNGG	2 cut(s)	731, 840
Bse1I	ACTGG	2 cut(s)	364, 473
Bse3DI	GCAATG	1 cut(s)	740
BseDI	CCNNGG	3 cut(s)	14, 651, 674
BseGI	GGATG	1 cut(s)	559
BseLI	CCNNNNNNNGG	2 cut(s)	731, 840
BseMI	GCAATG	1 cut(s)	740
BseNI	ACTGG	2 cut(s)	364, 473
BseRI	GAGGAG	1 cut(s)	635
BseSI	GKGCMC	1 cut(s)	132
BseXI	GCAGC	1 cut(s)	659
BseYI	CCCAGC	1 cut(s)	131
BsgI	GTGCAG	1 cut(s)	488
BshNI	GGYRCC	1 cut(s)	127
BsiHKAI	GWGCWC	1 cut(s)	371
BsiSI	CCGG	1 cut(s)	144
BslFI	GGGAC	2 cut(s)	412, 591
BslI	CCNNNNNNNGG	2 cut(s)	731, 840
BsmAI	GTCTC	1 cut(s)	4
BsmFI	GGGAC	2 cut(s)	412, 591
BsmI	GAATGC	2 cut(s)	49, 299
Bso31I	GGTCTC	1 cut(s)	4
Bsp1286I	GDGCHC	2 cut(s)	132, 371
Bsp1407I	TGTACA	1 cut(s)	850
Bsp143I	GATC	3 cut(s)	75, 146, 163
Bsp19I	CCATGG	1 cut(s)	674
BspACI	CCGC	2 cut(s)	323, 583
BspLI	GGNNCC	3 cut(s)	129, 148, 252
BspMAI	CTGCAG	1 cut(s)	649
BspOI	GCTAGC	1 cut(s)	317
BspPI	GGATC	2 cut(s)	141, 154
BspT107I	GGYRCC	1 cut(s)	127
BspTNI	GGTCTC	1 cut(s)	4
BsrDI	GCAATG	1 cut(s)	740
BsrGI	TGTACA	1 cut(s)	850
BsrI	ACTGG	2 cut(s)	364, 473
BssECI	CCNNGG	3 cut(s)	14, 651, 674
BssMI	GATC	3 cut(s)	75, 146, 163
BssNI	GRCGYC	1 cut(s)	761
BssSI	CACGAG	1 cut(s)	854
BssT1I	CCWWGG	2 cut(s)	651, 674
Bst2BI	CACGAG	1 cut(s)	854
Bst4CI	ACNGT	3 cut(s)	343, 595, 637
BstACI	GRCGYC	1 cut(s)	761
BstAUI	TGTACA	1 cut(s)	850
BstC8I	GCNNGC	1 cut(s)	315
BstDSI	CCRYGG	1 cut(s)	674
BstF5I	GGATG	1 cut(s)	559
BstHHI	GCGC	1 cut(s)	668
BstKTI	GATC	3 cut(s)	78, 149, 166
BstMAI	GTCTC	1 cut(s)	4
BstMBI	GATC	3 cut(s)	75, 146, 163
BstMWI	GCNNNNNNNGC	2 cut(s)	55, 375
BstSFI	CTRYAG	2 cut(s)	645, 661
BstSLI	GKGCMC	1 cut(s)	132
BstV1I	GCAGC	1 cut(s)	659
BstV2I	GAAGAC	4 cut(s)	55, 362, 485, 782
BstX2I	RGATCY	1 cut(s)	146
BstYI	RGATCY	1 cut(s)	146
BtgI	CCRYGG	1 cut(s)	674
BtsCI	GGATG	1 cut(s)	559
BtsI	GCAGTG	1 cut(s)	675
BtsIMutI	CAGTG	2 cut(s)	642, 675
Cac8I	GCNNGC	1 cut(s)	315
CfoI	GCGC	1 cut(s)	668
CseI	GACGC	2 cut(s)	769, 781
Csp6I	GTAC	3 cut(s)	604, 851, 859
CviAII	CATG	7 cut(s)	79, 482, 550, 601, 675, 757, 794
CviJI	RGCY	8 cut(s)	35, 158, 260, 313, 317, 532, 590, 650
CviKI_1	RGCY	8 cut(s)	35, 158, 260, 313, 317, 532, 590, 650
CviQI	GTAC	3 cut(s)	604, 851, 859
DpnI	GATC	3 cut(s)	77, 148, 165
DpnII	GATC	3 cut(s)	75, 146, 163
DraIII	CACNNNGTG	1 cut(s)	840
Eco130I	CCWWGG	2 cut(s)	651, 674
Eco31I	GGTCTC	1 cut(s)	4
Eco32I	GATATC	1 cut(s)	453
Eco57I	CTGAAG	2 cut(s)	15, 176
EcoRI	GAATTC	1 cut(s)	117
EcoRV	GATATC	1 cut(s)	453
EcoT14I	CCWWGG	2 cut(s)	651, 674
EcoT22I	ATGCAT	1 cut(s)	742
ErhI	CCWWGG	2 cut(s)	651, 674
FaeI	CATG	7 cut(s)	82, 485, 553, 604, 678, 760, 797
FaqI	GGGAC	2 cut(s)	412, 591
FatI	CATG	7 cut(s)	78, 481, 549, 600, 674, 756, 793
FauNDI	CATATG	1 cut(s)	327
FbaI	TGATCA	1 cut(s)	75
FblI	GTMKAC	1 cut(s)	348
Fnu4HI	GCNGC	1 cut(s)	648
FokI	GGATG	1 cut(s)	566
Fsp4HI	GCNGC	1 cut(s)	648
FspBI	CTAG	4 cut(s)	314, 567, 776, 786
GlaI	GCGC	1 cut(s)	667
GluI	GCNGC	1 cut(s)	648
GsaI	CCCAGC	1 cut(s)	135
GsuI	CTGGAG	1 cut(s)	772
HapII	CCGG	1 cut(s)	144
HgaI	GACGC	2 cut(s)	769, 781
HhaI	GCGC	1 cut(s)	668
Hin1I	GRCGYC	1 cut(s)	761
Hin1II	CATG	7 cut(s)	82, 485, 553, 604, 678, 760, 797
Hin6I	GCGC	1 cut(s)	666
HinP1I	GCGC	1 cut(s)	666
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HinfI	GANTC	3 cut(s)	19, 100, 212
HpaII	CCGG	1 cut(s)	144
HphI	GGTGA	1 cut(s)	641
Hpy166II	GTNNAC	6 cut(s)	84, 268, 349, 834, 851, 853
Hpy188I	TCNGA	6 cut(s)	39, 182, 195, 457, 613, 694
Hpy188III	TCNNGA	3 cut(s)	91, 280, 751
Hpy8I	GTNNAC	6 cut(s)	84, 268, 349, 834, 851, 853
Hpy99I	CGWCG	2 cut(s)	353, 775
HpyAV	CCTTC	2 cut(s)	39, 482
HpyCH4III	ACNGT	3 cut(s)	343, 595, 637
HpyCH4V	TGCA	4 cut(s)	297, 505, 647, 740
HpyF10VI	GCNNNNNNNGC	2 cut(s)	55, 375
Hsp92I	GRCGYC	1 cut(s)	761
Hsp92II	CATG	7 cut(s)	82, 485, 553, 604, 678, 760, 797
HspAI	GCGC	1 cut(s)	666
Ksp22I	TGATCA	1 cut(s)	75
Kzo9I	GATC	3 cut(s)	75, 146, 163
LmnI	GCTCC	1 cut(s)	753
Lsp1109I	GCAGC	1 cut(s)	659
LweI	GCATC	2 cut(s)	727, 757
MaeI	CTAG	4 cut(s)	314, 567, 776, 786
MaeIII	GTNAC	1 cut(s)	419
MalI	GATC	3 cut(s)	77, 148, 165
MboI	GATC	3 cut(s)	75, 146, 163
MboII	GAAGA	6 cut(s)	55, 95, 218, 367, 485, 782
MflI	RGATCY	1 cut(s)	146
MhlI	GDGCHC	2 cut(s)	132, 371
MluCI	AATT	3 cut(s)	117, 274, 438
MnlI	CCTC	9 cut(s)	9, 55, 160, 283, 407, 543, 613, 616, 701
Mph1103I	ATGCAT	1 cut(s)	742
MroXI	GAANNNNTTC	2 cut(s)	391, 492
MslI	CAYNNNNRTG	1 cut(s)	89
MspA1I	CMGCKG	1 cut(s)	583
MspI	CCGG	1 cut(s)	144
Mva1269I	GAATGC	2 cut(s)	49, 299
MwoI	GCNNNNNNNGC	2 cut(s)	55, 375
NcoI	CCATGG	1 cut(s)	674
NdeI	CATATG	1 cut(s)	327
NdeII	GATC	3 cut(s)	75, 146, 163
NheI	GCTAGC	1 cut(s)	313
NlaIII	CATG	7 cut(s)	82, 485, 553, 604, 678, 760, 797
NlaIV	GGNNCC	3 cut(s)	129, 148, 252
NmuCI	GTSAC	1 cut(s)	419
NsiI	ATGCAT	1 cut(s)	742
OliI	CACNNNNGTG	1 cut(s)	89
PcsI	WCGNNNNNNNCGW	2 cut(s)	66, 767
PctI	GAATGC	2 cut(s)	49, 299
PdmI	GAANNNNTTC	2 cut(s)	391, 492
PfeI	GAWTC	3 cut(s)	19, 100, 212
PflMI	CCANNNNNTGG	1 cut(s)	840
PkrI	GCNGC	1 cut(s)	649
PsiI	TTATAA	1 cut(s)	812
PspFI	CCCAGC	1 cut(s)	131
PspN4I	GGNNCC	3 cut(s)	129, 148, 252
PstI	CTGCAG	1 cut(s)	649
PsuI	RGATCY	1 cut(s)	146
RsaI	GTAC	3 cut(s)	605, 852, 860
RsaNI	GTAC	3 cut(s)	604, 851, 859
RseI	CAYNNNNRTG	1 cut(s)	89
SalI	GTCGAC	1 cut(s)	347
SatI	GCNGC	1 cut(s)	648
Sau3AI	GATC	3 cut(s)	75, 146, 163
SduI	GDGCHC	2 cut(s)	132, 371
SetI	ASST	7 cut(s)	37, 262, 315, 319, 493, 609, 867
SfaNI	GCATC	2 cut(s)	727, 757
SfcI	CTRYAG	2 cut(s)	645, 661
SmiMI	CAYNNNNRTG	1 cut(s)	89
Sse9I	AATT	3 cut(s)	117, 274, 438
SsiI	CCGC	2 cut(s)	323, 583
SspMI	CTAG	4 cut(s)	314, 567, 776, 786
StyI	CCWWGG	2 cut(s)	651, 674
TaaI	ACNGT	3 cut(s)	343, 595, 637
TaqI	TCGA	1 cut(s)	348
TaqII	GACCGA	1 cut(s)	28
TasI	AATT	3 cut(s)	117, 274, 438
TatI	WGTACW	2 cut(s)	850, 858
TfiI	GAWTC	3 cut(s)	19, 100, 212
TscAI	CASTG	2 cut(s)	642, 675
TseFI	GTSAC	1 cut(s)	419
TseI	GCWGC	1 cut(s)	647
Tsp45I	GTSAC	1 cut(s)	419
TspDTI	ATGAA	3 cut(s)	457, 538, 782
TspGWI	ACGGA	1 cut(s)	422
TspRI	CASTG	2 cut(s)	642, 675
Van91I	CCANNNNNTGG	1 cut(s)	840
XapI	RAATTY	1 cut(s)	117
XmiI	GTMKAC	1 cut(s)	348
XmnI	GAANNNNTTC	2 cut(s)	391, 492
XspI	CTAG	4 cut(s)	314, 567, 776, 786
Zsp2I	ATGCAT	1 cut(s)	742

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.