Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0010755

Physical Location & Seq

Genomic Coordinates Forward (+)

6667929 .. 6669870

Gene Structure 1942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g09640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGCTGTCAAGCATCGGCACTCGCGCCTTCCGGCTCGCAAAACGTCGACGGCCTCGTCCACGACGCTGGTCCTCACCTTGCTGGTCATGTTCACCTTCGTCATCCTCATTCTCCTCGCCCTCGGCATCCTCTCCGTCCCCAGCGGCTCCTCCGGCAGCTCCCCCAAAGCCAACGATCTCAGCTCGATCTTGCGGCAGAGCGTCGAGAGGAATGAAGAAAATGAGGCAGGGGAGCAGTGGGTCGAAGCCATCTCTTGGGAGCCAAGAGCTTTTGTGTATCACAATTTCTTGACCAAGGAGGAATGTGAATACCTAATCGATCTTGCCAAACCGACTATGCACAAGTCATCGGTAGTTGATAGTGAAACCGGAAAGAGCAGAGATAGCAGGGTTCGTACGAGCTCTGGAACATTTTTGGCAAGAGGGCGCGATAAAATTATCAGGAACATTGAGAAAAAAATCGCTAATTTCACCTTTTTACCTGTAGAACAGGGGGAGGGGCTTCAGGTTCTCCACTATGAAGTTGGACAGAAGTATGAACCTCACTTTGACTATTTTCAAGATGACTTTAACACCAAGAATGGAGGCCAACATGTTGAAGAAGGGGGTGAGACTGTGTTCCCCGCTGCCAAAGGGAATATTAGCTCTGTGCCTTGGTGGAGTGAGCTATCTGAATGCGGTAAAAAAGGACTTTCAGTTAAACCTAAGATGGGCAATGCACTGCTTTTCTGGAGCATGAGGCCTGACGCAAGTCTAGATCCTTCAAGTTTACATGGCGGATGCCCTGTGATTAAGGGGAATAAGTGGTCATCTACTAAATGGATCCGTGTCAGCGAGTACGCTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004656 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006464 GO:0006520 GO:0006575 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0018401 GO:0019471 GO:0019511 GO:0019538 GO:0019752 GO:0019798 GO:0021700 GO:0022622 GO:0030154 GO:0031543 GO:0031545 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0051213 GO:0055114 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:0140096 GO:1901564 GO:1901605 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3

Protein Analysis

283

Amino Acids

31.41

Weight (kDa)

8.33

Isoelectric Point (pI)

55.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy_3	PF13640	168 - 276	2e-10	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17720 AT4G35810 AT4G35810 AT5G66060 AT5G66060
fragaria_vesca	FvH4_1g11100
malus_domestica	MD02G1123600.v1.1 MD15G1237500.v1.1
prunus_persica	Prupe.7G174900_v2.0.a1
pyrus_communis	pycom02g09640
rosa_chinensis	RchiOBHm_Chr2g0098371
rosa_laevigata	RLG00000016795
rosa_multiflora	Rmu_sc0023758.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144030
rosa_rugosa	Rorug02G0072600 Rorug02G0072700
rosa_samantha	Rh2AG119700 Rh2BG122800 Rh2CG124400
rosa_wichuraiana	Rw2G009380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	55
AccB7I	CCANNNNNTGG	1 cut(s)	255
AccI	GTMKAC	1 cut(s)	47
AccII	CGCG	2 cut(s)	25, 429
AciI	CCGC	5 cut(s)	144, 193, 624, 678, 777
AclWI	GGATC	3 cut(s)	752, 817, 830
AcuI	CTGAAG	1 cut(s)	488
AfaI	GTAC	2 cut(s)	397, 839
AfiI	CCNNNNNNNGG	2 cut(s)	255, 710
AflIII	ACRYGT	1 cut(s)	592
AgsI	TTSAA	3 cut(s)	560, 599, 765
AluBI	AGCT	6 cut(s)	159, 183, 269, 402, 645, 667
AluI	AGCT	6 cut(s)	159, 183, 269, 402, 645, 667
Alw21I	GWGCWC	1 cut(s)	404
Alw26I	GTCTC	1 cut(s)	605
AlwI	GGATC	3 cut(s)	752, 817, 830
AoxI	GGCC	3 cut(s)	51, 586, 740
ApeKI	GCWGC	2 cut(s)	156, 626
AspLEI	GCGC	2 cut(s)	27, 429
AspS9I	GGNCC	1 cut(s)	70
AsuHPI	GGTGA	4 cut(s)	67, 85, 463, 620
AvaII	GGWCC	1 cut(s)	70
BamHI	GGATCC	1 cut(s)	822
BanII	GRGCYC	1 cut(s)	404
Bbv12I	GWGCWC	1 cut(s)	404
BbvI	GCAGC	2 cut(s)	168, 613
BccI	CCATC	2 cut(s)	257, 703
BceAI	ACGGC	1 cut(s)	66
BcoDI	GTCTC	1 cut(s)	605
BfaI	CTAG	1 cut(s)	755
BfmI	CTRYAG	1 cut(s)	483
BisI	GCNGC	4 cut(s)	145, 157, 194, 627
BlsI	GCNGC	4 cut(s)	146, 158, 195, 628
Bme18I	GGWCC	1 cut(s)	70
BmgT120I	GGNCC	1 cut(s)	70
BmiI	GGNNCC	3 cut(s)	148, 261, 824
BmsI	GCATC	3 cut(s)	22, 135, 770
BoxI	GACNNNNGTC	2 cut(s)	68, 750
BpmI	CTGGAG	1 cut(s)	751
Bsa29I	ATCGAT	1 cut(s)	318
BsaJI	CCNNGG	3 cut(s)	121, 294, 653
BsaWI	WCCGGW	1 cut(s)	368
Bsc4I	CCNNNNNNNGG	2 cut(s)	255, 710
Bse3DI	GCAATG	1 cut(s)	721
BseCI	ATCGAT	1 cut(s)	318
BseDI	CCNNGG	3 cut(s)	121, 294, 653
BseGI	GGATG	3 cut(s)	102, 126, 785
BseLI	CCNNNNNNNGG	2 cut(s)	255, 710
BseMI	GCAATG	1 cut(s)	721
BseMII	CTCAG	1 cut(s)	193
BseRI	GAGGAG	2 cut(s)	104, 139
BseXI	GCAGC	2 cut(s)	168, 613
BseYI	CCCAGC	1 cut(s)	140
Bsh1236I	CGCG	2 cut(s)	25, 429
BshFI	GGCC	3 cut(s)	53, 588, 742
BshVI	ATCGAT	1 cut(s)	318
BsiHKAI	GWGCWC	1 cut(s)	404
BsiSI	CCGG	3 cut(s)	32, 153, 369
BsiWI	CGTACG	1 cut(s)	395
BslFI	GGGAC	1 cut(s)	122
BslI	CCNNNNNNNGG	2 cut(s)	255, 710
BsmAI	GTCTC	1 cut(s)	605
BsmFI	GGGAC	1 cut(s)	122
BsmI	GAATGC	1 cut(s)	680
BsnI	GGCC	3 cut(s)	53, 588, 742
Bsp1286I	GDGCHC	1 cut(s)	404
Bsp143I	GATC	5 cut(s)	175, 186, 319, 757, 822
BspACI	CCGC	5 cut(s)	144, 193, 624, 678, 777
BspANI	GGCC	3 cut(s)	53, 588, 742
BspCNI	CTCAG	1 cut(s)	192
BspDI	ATCGAT	1 cut(s)	318
BspFNI	CGCG	2 cut(s)	25, 429
BspLI	GGNNCC	3 cut(s)	148, 261, 824
BspPI	GGATC	3 cut(s)	752, 817, 830
BsrDI	GCAATG	1 cut(s)	721
BssECI	CCNNGG	3 cut(s)	121, 294, 653
BssMI	GATC	5 cut(s)	175, 186, 319, 757, 822
BssT1I	CCWWGG	2 cut(s)	294, 653
Bst4CI	ACNGT	1 cut(s)	616
BstC8I	GCNNGC	1 cut(s)	37
BstDEI	CTNAG	2 cut(s)	179, 705
BstF5I	GGATG	3 cut(s)	102, 126, 785
BstFNI	CGCG	2 cut(s)	25, 429
BstHHI	GCGC	2 cut(s)	27, 429
BstKTI	GATC	5 cut(s)	178, 189, 322, 760, 825
BstMAI	GTCTC	1 cut(s)	605
BstMBI	GATC	5 cut(s)	175, 186, 319, 757, 822
BstMWI	GCNNNNNNNGC	2 cut(s)	153, 384
BstNSI	RCATGY	1 cut(s)	596
BstPAI	GACNNNNGTC	2 cut(s)	68, 750
BstSFI	CTRYAG	1 cut(s)	483
BstUI	CGCG	2 cut(s)	25, 429
BstV1I	GCAGC	2 cut(s)	168, 613
BstX2I	RGATCY	2 cut(s)	757, 822
BstXI	CCANNNNNNTGG	1 cut(s)	67
BstYI	RGATCY	2 cut(s)	757, 822
Bsu15I	ATCGAT	1 cut(s)	318
BsuRI	GGCC	3 cut(s)	53, 588, 742
BsuTUI	ATCGAT	1 cut(s)	318
BtsCI	GGATG	3 cut(s)	102, 126, 785
BtsI	GCAGTG	2 cut(s)	242, 719
BtsIMutI	CAGTG	2 cut(s)	242, 719
Cac8I	GCNNGC	1 cut(s)	37
CfoI	GCGC	2 cut(s)	27, 429
Cfr13I	GGNCC	1 cut(s)	70
ClaI	ATCGAT	1 cut(s)	318
CseI	GACGC	3 cut(s)	73, 190, 755
Csp6I	GTAC	2 cut(s)	396, 838
CviAII	CATG	4 cut(s)	88, 593, 736, 773
CviQI	GTAC	2 cut(s)	396, 838
DdeI	CTNAG	2 cut(s)	179, 705
DpnI	GATC	5 cut(s)	177, 188, 321, 759, 824
DpnII	GATC	5 cut(s)	175, 186, 319, 757, 822
DrdI	GACNNNNNNGTC	1 cut(s)	55
DseDI	GACNNNNNNGTC	1 cut(s)	55
EciI	GGCGGA	1 cut(s)	792
Ecl136II	GAGCTC	1 cut(s)	402
Eco130I	CCWWGG	2 cut(s)	294, 653
Eco147I	AGGCCT	1 cut(s)	742
Eco24I	GRGCYC	1 cut(s)	404
Eco47I	GGWCC	1 cut(s)	70
Eco53kI	GAGCTC	1 cut(s)	402
Eco57I	CTGAAG	1 cut(s)	488
EcoICRI	GAGCTC	1 cut(s)	402
EcoT14I	CCWWGG	2 cut(s)	294, 653
EcoT38I	GRGCYC	1 cut(s)	404
ErhI	CCWWGG	2 cut(s)	294, 653
FaeI	CATG	4 cut(s)	91, 596, 739, 776
FaiI	YATR	7 cut(s)	89, 338, 519, 537, 594, 737, 774
FaqI	GGGAC	1 cut(s)	122
FatI	CATG	4 cut(s)	87, 592, 735, 772
FauI	CCCGC	1 cut(s)	631
FblI	GTMKAC	1 cut(s)	47
Fnu4HI	GCNGC	4 cut(s)	145, 157, 194, 627
FokI	GGATG	3 cut(s)	89, 113, 792
FriOI	GRGCYC	1 cut(s)	404
Fsp4HI	GCNGC	4 cut(s)	145, 157, 194, 627
FspBI	CTAG	1 cut(s)	755
GlaI	GCGC	2 cut(s)	26, 428
GluI	GCNGC	4 cut(s)	145, 157, 194, 627
GsaI	CCCAGC	1 cut(s)	144
GsuI	CTGGAG	1 cut(s)	751
HaeIII	GGCC	3 cut(s)	53, 588, 742
HapII	CCGG	3 cut(s)	32, 153, 369
HgaI	GACGC	3 cut(s)	73, 190, 755
HhaI	GCGC	2 cut(s)	27, 429
Hin1II	CATG	4 cut(s)	91, 596, 739, 776
Hin6I	GCGC	2 cut(s)	25, 427
HinP1I	GCGC	2 cut(s)	25, 427
HincII	GTYRAC	1 cut(s)	48
HindII	GTYRAC	1 cut(s)	48
HpaII	CCGG	3 cut(s)	32, 153, 369
HphI	GGTGA	4 cut(s)	67, 85, 463, 620
Hpy166II	GTNNAC	4 cut(s)	48, 60, 93, 770
Hpy188I	TCNGA	1 cut(s)	673
Hpy188III	TCNNGA	7 cut(s)	205, 289, 405, 442, 560, 730, 755
Hpy8I	GTNNAC	4 cut(s)	48, 60, 93, 770
Hpy99I	CGWCG	4 cut(s)	49, 52, 67, 206
HpyAV	CCTTC	4 cut(s)	38, 106, 596, 771
HpyCH4III	ACNGT	1 cut(s)	616
HpyCH4IV	ACGT	1 cut(s)	44
HpyCH4V	TGCA	2 cut(s)	340, 719
HpyF10VI	GCNNNNNNNGC	2 cut(s)	153, 384
HpyF3I	CTNAG	2 cut(s)	179, 705
HpySE526I	ACGT	1 cut(s)	44
Hsp92II	CATG	4 cut(s)	91, 596, 739, 776
HspAI	GCGC	2 cut(s)	25, 427
Kzo9I	GATC	5 cut(s)	175, 186, 319, 757, 822
LmnI	GCTCC	5 cut(s)	152, 164, 232, 259, 732
Lsp1109I	GCAGC	2 cut(s)	168, 613
LweI	GCATC	3 cut(s)	22, 135, 770
MaeI	CTAG	1 cut(s)	755
MaeII	ACGT	1 cut(s)	44
MalI	GATC	5 cut(s)	177, 188, 321, 759, 824
MboI	GATC	5 cut(s)	175, 186, 319, 757, 822
MboII	GAAGA	2 cut(s)	227, 611
MflI	RGATCY	2 cut(s)	757, 822
MhlI	GDGCHC	1 cut(s)	404
MluCI	AATT	3 cut(s)	283, 435, 466
MmeI	TCCRAC	1 cut(s)	505
MseI	TTAA	3 cut(s)	570, 699, 792
MspA1I	CMGCKG	2 cut(s)	144, 626
MspI	CCGG	3 cut(s)	32, 153, 369
Mva1269I	GAATGC	1 cut(s)	680
MvnI	CGCG	2 cut(s)	25, 429
MwoI	GCNNNNNNNGC	2 cut(s)	153, 384
NdeII	GATC	5 cut(s)	175, 186, 319, 757, 822
NlaIII	CATG	4 cut(s)	91, 596, 739, 776
NlaIV	GGNNCC	3 cut(s)	148, 261, 824
NmeAIII	GCCGAG	1 cut(s)	102
NspI	RCATGY	1 cut(s)	596
PceI	AGGCCT	1 cut(s)	742
PciI	ACATGT	1 cut(s)	592
PcsI	WCGNNNNNNNCGW	1 cut(s)	53
PctI	GAATGC	1 cut(s)	680
Pfl23II	CGTACG	1 cut(s)	395
PflMI	CCANNNNNTGG	1 cut(s)	255
PkrI	GCNGC	4 cut(s)	146, 158, 195, 628
PscI	ACATGT	1 cut(s)	592
PshAI	GACNNNNGTC	2 cut(s)	68, 750
Psp124BI	GAGCTC	1 cut(s)	404
PspFI	CCCAGC	1 cut(s)	140
PspLI	CGTACG	1 cut(s)	395
PspN4I	GGNNCC	3 cut(s)	148, 261, 824
PspPI	GGNCC	1 cut(s)	70
PsuI	RGATCY	2 cut(s)	757, 822
RsaI	GTAC	2 cut(s)	397, 839
RsaNI	GTAC	2 cut(s)	396, 838
SacI	GAGCTC	1 cut(s)	404
SalI	GTCGAC	1 cut(s)	46
SaqAI	TTAA	3 cut(s)	570, 699, 792
SatI	GCNGC	4 cut(s)	145, 157, 194, 627
Sau3AI	GATC	5 cut(s)	175, 186, 319, 757, 822
Sau96I	GGNCC	1 cut(s)	70
SduI	GDGCHC	1 cut(s)	404
SfaNI	GCATC	3 cut(s)	22, 135, 770
SfcI	CTRYAG	1 cut(s)	483
SgrDI	CGTCGACG	1 cut(s)	46
SinI	GGWCC	1 cut(s)	70
Sse9I	AATT	3 cut(s)	283, 435, 466
SseBI	AGGCCT	1 cut(s)	742
SsiI	CCGC	5 cut(s)	144, 193, 624, 678, 777
SspI	AATATT	1 cut(s)	640
SspMI	CTAG	1 cut(s)	755
SstI	GAGCTC	1 cut(s)	404
StuI	AGGCCT	1 cut(s)	742
StyI	CCWWGG	2 cut(s)	294, 653
TaaI	ACNGT	1 cut(s)	616
TaiI	ACGT	1 cut(s)	47
TaqI	TCGA	5 cut(s)	47, 185, 204, 243, 318
TasI	AATT	3 cut(s)	283, 435, 466
TauI	GCSGC	2 cut(s)	147, 196
Tru1I	TTAA	3 cut(s)	570, 699, 792
Tru9I	TTAA	3 cut(s)	570, 699, 792
TscAI	CASTG	2 cut(s)	242, 726
TseI	GCWGC	2 cut(s)	156, 626
TspDTI	ATGAA	3 cut(s)	228, 534, 552
TspGWI	ACGGA	2 cut(s)	124, 815
TspRI	CASTG	2 cut(s)	242, 726
Van91I	CCANNNNNTGG	1 cut(s)	255
VpaK11BI	GGWCC	1 cut(s)	70
XbaI	TCTAGA	1 cut(s)	754
XceI	RCATGY	1 cut(s)	596
XcmI	CCANNNNNNNNNTGG	1 cut(s)	521
XmiI	GTMKAC	1 cut(s)	47
XspI	CTAG	1 cut(s)	755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.