Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010755

Physical Location & Seq

Genomic Coordinates Forward (+)

16968755 .. 16970667

Gene Structure 1913 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G35810.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGCGAAGAAACCGAAGCAGCTCCGTAACAAGCCGCGTAAATCTTTTTCGACGCAAACTTTCACAGTTGTCGTACTTGTACTCTTTGTCATTTTGATCCTTGTCGGTCTCGGAATCTTTTCACTACCCAGCACCAACAAGACCTCTTCTATGCCGATGGATTTGACCACCATTGTACAAACGATCCAGGAGAGGGAGAGTTTTGGAGACGAAGAAGACGGTAATGGTGACCGCTGGCTGGAAGTTATCTCCTGGGAGCCTAGAGCTTTTGTTTACCACAACTTCTTGACAAATGAAGAATGTGAGCACTTGATTAGCCTTGCGAAACCTAGTATGATGAAATCAAAGGTGGTTGATGTGAAAACCGGAAAGAGCATCGACAGCAGAGTACGAACCAGTTCAGGAACTTTTCTTAACAGAGGACATGACGAAATAGTGGAAGAGATTGAGAATAGGATTTCAGATTTCACCTTCATTCCTCCAGAAAATGGAGAGGGGCTGCAAGTTCTTCATTATGAAGTTGGGCAGAGATATGAGCCTCACCATGACTATTTCTTTGATGAGTTCAATGTCAGGAAAGGAGGGCAACGAATTGCTACAGTACTAATGTACCTCTCGGATGTCGATGAAGGCGGAGAAACAGTTTTCCCTGCAGCCAAAGGAAACGTTAGTGATGTCCCATGGTGGGACGAGCTCTCACAATGTGGTAAAGAAGGACTCTCTGTTCTGCCAAAGAAGAGAGACGCTTTACTCTTCTGGAGCATGAAGCCTGACGCGTCTCTAGACCCTTCTAGTTTGCATGGTGGTTGTCCAGTGATCAAAGGAAACAAGTGGTCATCAACTAAATGGTTTCACGTTCACGAGTACAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004656 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006464 GO:0006520 GO:0006575 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0018401 GO:0019471 GO:0019511 GO:0019538 GO:0019752 GO:0019798 GO:0021700 GO:0022622 GO:0030154 GO:0031543 GO:0031545 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0051213 GO:0055114 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:0140096 GO:1901564 GO:1901605 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3

Protein Analysis

290

Amino Acids

32.91

Weight (kDa)

5.76

Isoelectric Point (pI)

37.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	165 - 285	7.9e-09	2OG-Fe(II) oxygenase superfamily
2OG-FeII_Oxy_3	PF13640	167 - 285	2.2e-17	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17720 AT4G35810 AT4G35810 AT5G66060 AT5G66060
fragaria_vesca	FvH4_1g11100
malus_domestica	MD02G1123600.v1.1 MD15G1237500.v1.1
prunus_persica	Prupe.7G174900_v2.0.a1
pyrus_communis	pycom02g09640
rosa_chinensis	RchiOBHm_Chr2g0098371
rosa_laevigata	RLG00000016795
rosa_multiflora	Rmu_sc0023758.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144030
rosa_rugosa	Rorug02G0072600 Rorug02G0072700
rosa_samantha	Rh2AG119700 Rh2BG122800 Rh2CG124400
rosa_wichuraiana	Rw2G009380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	488
AccII	CGCG	2 cut(s)	37, 776
AciI	CCGC	3 cut(s)	35, 232, 633
AclI	AACGTT	1 cut(s)	666
AclWI	GGATC	2 cut(s)	91, 178
AdeI	CACNNNGTG	1 cut(s)	704
AfaI	GTAC	7 cut(s)	75, 81, 177, 390, 603, 611, 866
AfiI	CCNNNNNNNGG	4 cut(s)	193, 238, 488, 685
AflIII	ACRYGT	1 cut(s)	774
AgsI	TTSAA	1 cut(s)	568
AjnI	CCWGG	2 cut(s)	186, 251
AloI	GAACNNNNNNTCC	2 cut(s)	708, 740
AluBI	AGCT	3 cut(s)	22, 266, 694
AluI	AGCT	3 cut(s)	22, 266, 694
Alw21I	GWGCWC	2 cut(s)	309, 696
Alw26I	GTCTC	4 cut(s)	113, 201, 735, 783
AlwI	GGATC	2 cut(s)	91, 178
ApeKI	GCWGC	3 cut(s)	19, 499, 653
ArsI	GACNNNNNNTTYG	2 cut(s)	539, 571
Asp700I	GAANNNNTTC	2 cut(s)	118, 397
AsuHPI	GGTGA	3 cut(s)	239, 460, 533
BaeI	ACNNNNGTAYC	2 cut(s)	593, 626
BanII	GRGCYC	1 cut(s)	696
BauI	CACGAG	1 cut(s)	860
BbsI	GAAGAC	1 cut(s)	222
Bbv12I	GWGCWC	2 cut(s)	309, 696
BbvI	GCAGC	3 cut(s)	31, 486, 665
BccI	CCATC	1 cut(s)	151
BciT130I	CCWGG	2 cut(s)	188, 253
BclI	TGATCA	1 cut(s)	816
BcoDI	GTCTC	4 cut(s)	113, 201, 735, 783
BfaI	CTAG	4 cut(s)	261, 330, 782, 792
BfmI	CTRYAG	2 cut(s)	597, 651
BisI	GCNGC	4 cut(s)	20, 35, 500, 654
BlsI	GCNGC	4 cut(s)	21, 36, 501, 655
BmcAI	AGTACT	1 cut(s)	603
Bme1390I	CCNGG	2 cut(s)	188, 253
BmiI	GGNNCC	1 cut(s)	258
BmrFI	CCNGG	2 cut(s)	188, 253
BmsI	GCATC	1 cut(s)	384
BpiI	GAAGAC	1 cut(s)	222
BpmI	CTGGAG	2 cut(s)	465, 778
BsaI	GGTCTC	1 cut(s)	113
BsaJI	CCNNGG	2 cut(s)	252, 680
BsaWI	WCCGGW	1 cut(s)	365
BsaXI	ACNNNNNCTCC	2 cut(s)	627, 657
Bsc4I	CCNNNNNNNGG	4 cut(s)	193, 238, 488, 685
Bse1I	ACTGG	2 cut(s)	396, 812
BseBI	CCWGG	2 cut(s)	188, 253
BseDI	CCNNGG	2 cut(s)	252, 680
BseGI	GGATG	1 cut(s)	625
BseLI	CCNNNNNNNGG	4 cut(s)	193, 238, 488, 685
BseNI	ACTGG	2 cut(s)	396, 812
BseXI	GCAGC	3 cut(s)	31, 486, 665
BseYI	CCCAGC	1 cut(s)	128
Bsh1236I	CGCG	2 cut(s)	37, 776
BsiHKAI	GWGCWC	2 cut(s)	309, 696
BsiSI	CCGG	1 cut(s)	366
BslFI	GGGAC	2 cut(s)	662, 701
BslI	CCNNNNNNNGG	4 cut(s)	193, 238, 488, 685
BsmAI	GTCTC	4 cut(s)	113, 201, 735, 783
BsmBI	CGTCTC	3 cut(s)	201, 735, 783
BsmFI	GGGAC	2 cut(s)	662, 701
Bso31I	GGTCTC	1 cut(s)	113
Bsp1286I	GDGCHC	2 cut(s)	309, 696
Bsp1407I	TGTACA	1 cut(s)	175
Bsp143I	GATC	3 cut(s)	96, 183, 816
Bsp19I	CCATGG	1 cut(s)	680
BspACI	CCGC	3 cut(s)	35, 232, 633
BspFNI	CGCG	2 cut(s)	37, 776
BspLI	GGNNCC	1 cut(s)	258
BspMAI	CTGCAG	1 cut(s)	655
BspPI	GGATC	2 cut(s)	91, 178
BspTNI	GGTCTC	1 cut(s)	113
BsrGI	TGTACA	1 cut(s)	175
BsrI	ACTGG	2 cut(s)	396, 812
BssECI	CCNNGG	2 cut(s)	252, 680
BssMI	GATC	3 cut(s)	96, 183, 816
BssSI	CACGAG	1 cut(s)	860
BssT1I	CCWWGG	1 cut(s)	680
Bst2BI	CACGAG	1 cut(s)	860
Bst2UI	CCWGG	2 cut(s)	188, 253
Bst4CI	ACNGT	4 cut(s)	67, 221, 601, 643
Bst6I	CTCTTC	4 cut(s)	151, 435, 731, 758
BstAUI	TGTACA	1 cut(s)	175
BstC8I	GCNNGC	1 cut(s)	236
BstDSI	CCRYGG	1 cut(s)	680
BstEII	GGTNACC	1 cut(s)	227
BstF5I	GGATG	1 cut(s)	625
BstFNI	CGCG	2 cut(s)	37, 776
BstKTI	GATC	3 cut(s)	99, 186, 819
BstMAI	GTCTC	4 cut(s)	113, 201, 735, 783
BstMBI	GATC	3 cut(s)	96, 183, 816
BstMWI	GCNNNNNNNGC	1 cut(s)	381
BstNI	CCWGG	2 cut(s)	188, 253
BstPI	GGTNACC	1 cut(s)	227
BstSCI	CCNGG	2 cut(s)	186, 251
BstSFI	CTRYAG	2 cut(s)	597, 651
BstUI	CGCG	2 cut(s)	37, 776
BstV1I	GCAGC	3 cut(s)	31, 486, 665
BstV2I	GAAGAC	1 cut(s)	222
BtgI	CCRYGG	1 cut(s)	680
BtsCI	GGATG	1 cut(s)	625
BtsIMutI	CAGTG	1 cut(s)	819
Cac8I	GCNNGC	1 cut(s)	236
CseI	GACGC	4 cut(s)	61, 752, 765, 782
Csp6I	GTAC	7 cut(s)	74, 80, 176, 389, 602, 610, 865
CviAII	CATG	5 cut(s)	425, 545, 681, 763, 800
CviQI	GTAC	7 cut(s)	74, 80, 176, 389, 602, 610, 865
DpnI	GATC	3 cut(s)	98, 185, 818
DpnII	GATC	3 cut(s)	96, 183, 816
DraIII	CACNNNGTG	1 cut(s)	704
Eam1104I	CTCTTC	4 cut(s)	151, 435, 731, 758
EarI	CTCTTC	4 cut(s)	151, 435, 731, 758
EciI	GGCGGA	1 cut(s)	648
Ecl136II	GAGCTC	1 cut(s)	694
Eco130I	CCWWGG	1 cut(s)	680
Eco24I	GRGCYC	1 cut(s)	696
Eco31I	GGTCTC	1 cut(s)	113
Eco53kI	GAGCTC	1 cut(s)	694
Eco91I	GGTNACC	1 cut(s)	227
EcoICRI	GAGCTC	1 cut(s)	694
EcoO65I	GGTNACC	1 cut(s)	227
EcoRII	CCWGG	2 cut(s)	186, 251
EcoT14I	CCWWGG	1 cut(s)	680
EcoT38I	GRGCYC	1 cut(s)	696
ErhI	CCWWGG	1 cut(s)	680
Esp3I	CGTCTC	3 cut(s)	201, 735, 783
FaeI	CATG	5 cut(s)	428, 548, 684, 766, 803
FaiI	YATR	9 cut(s)	152, 335, 426, 516, 534, 546, 682, 764, 801
FaqI	GGGAC	2 cut(s)	662, 701
FatI	CATG	5 cut(s)	424, 544, 680, 762, 799
FbaI	TGATCA	1 cut(s)	816
Fnu4HI	GCNGC	4 cut(s)	20, 35, 500, 654
FokI	GGATG	1 cut(s)	632
FriOI	GRGCYC	1 cut(s)	696
Fsp4HI	GCNGC	4 cut(s)	20, 35, 500, 654
FspBI	CTAG	4 cut(s)	261, 330, 782, 792
GluI	GCNGC	4 cut(s)	20, 35, 500, 654
GsaI	CCCAGC	1 cut(s)	132
GsuI	CTGGAG	2 cut(s)	465, 778
HapII	CCGG	1 cut(s)	366
HgaI	GACGC	4 cut(s)	61, 752, 765, 782
Hin1II	CATG	5 cut(s)	428, 548, 684, 766, 803
HinfI	GANTC	2 cut(s)	114, 717
HpaII	CCGG	1 cut(s)	366
HphI	GGTGA	3 cut(s)	239, 460, 533
Hpy166II	GTNNAC	2 cut(s)	274, 859
Hpy188I	TCNGA	3 cut(s)	113, 463, 619
Hpy188III	TCNNGA	7 cut(s)	286, 402, 482, 574, 757, 782, 860
Hpy8I	GTNNAC	2 cut(s)	274, 859
Hpy99I	CGWCG	1 cut(s)	55
HpyAV	CCTTC	4 cut(s)	481, 623, 707, 798
HpyCH4III	ACNGT	4 cut(s)	67, 221, 601, 643
HpyCH4IV	ACGT	2 cut(s)	666, 855
HpyCH4V	TGCA	3 cut(s)	502, 653, 799
HpyF10VI	GCNNNNNNNGC	1 cut(s)	381
HpySE526I	ACGT	2 cut(s)	666, 855
Hsp92II	CATG	5 cut(s)	428, 548, 684, 766, 803
Ksp22I	TGATCA	1 cut(s)	816
Kzo9I	GATC	3 cut(s)	96, 183, 816
LmnI	GCTCC	3 cut(s)	27, 256, 759
Lsp1109I	GCAGC	3 cut(s)	31, 486, 665
LweI	GCATC	1 cut(s)	384
MaeI	CTAG	4 cut(s)	261, 330, 782, 792
MaeII	ACGT	2 cut(s)	666, 855
MaeIII	GTNAC	2 cut(s)	26, 227
MalI	GATC	3 cut(s)	98, 185, 818
MboI	GATC	3 cut(s)	96, 183, 816
MboII	GAAGA	9 cut(s)	19, 138, 224, 227, 308, 452, 500, 745, 748
MfeI	CAATTG	1 cut(s)	868
MhlI	GDGCHC	2 cut(s)	309, 696
MluCI	AATT	2 cut(s)	591, 868
MluI	ACGCGT	1 cut(s)	774
MlyI	GAGTC	1 cut(s)	711
MnlI	CCTC	8 cut(s)	154, 186, 413, 487, 489, 549, 575, 623
MroXI	GAANNNNTTC	2 cut(s)	118, 397
MseI	TTAA	1 cut(s)	414
MspA1I	CMGCKG	1 cut(s)	234
MspI	CCGG	1 cut(s)	366
MspR9I	CCNGG	2 cut(s)	188, 253
MunI	CAATTG	1 cut(s)	868
MvaI	CCWGG	2 cut(s)	188, 253
MvnI	CGCG	2 cut(s)	37, 776
MwoI	GCNNNNNNNGC	1 cut(s)	381
NcoI	CCATGG	1 cut(s)	680
NdeII	GATC	3 cut(s)	96, 183, 816
NlaIII	CATG	5 cut(s)	428, 548, 684, 766, 803
NlaIV	GGNNCC	1 cut(s)	258
NmuCI	GTSAC	1 cut(s)	227
PdmI	GAANNNNTTC	2 cut(s)	118, 397
PfeI	GAWTC	1 cut(s)	114
PflMI	CCANNNNNTGG	1 cut(s)	488
PfoI	TCCNGGA	1 cut(s)	186
PkrI	GCNGC	4 cut(s)	21, 36, 501, 655
PleI	GAGTC	1 cut(s)	711
PpsI	GAGTC	1 cut(s)	711
Psp124BI	GAGCTC	1 cut(s)	696
Psp1406I	AACGTT	1 cut(s)	666
Psp6I	CCWGG	2 cut(s)	186, 251
PspEI	GGTNACC	1 cut(s)	227
PspFI	CCCAGC	1 cut(s)	128
PspGI	CCWGG	2 cut(s)	186, 251
PspN4I	GGNNCC	1 cut(s)	258
PstI	CTGCAG	1 cut(s)	655
RsaI	GTAC	7 cut(s)	75, 81, 177, 390, 603, 611, 866
RsaNI	GTAC	7 cut(s)	74, 80, 176, 389, 602, 610, 865
SacI	GAGCTC	1 cut(s)	696
SaqAI	TTAA	1 cut(s)	414
SatI	GCNGC	4 cut(s)	20, 35, 500, 654
Sau3AI	GATC	3 cut(s)	96, 183, 816
ScaI	AGTACT	1 cut(s)	603
SchI	GAGTC	1 cut(s)	711
ScrFI	CCNGG	2 cut(s)	188, 253
SduI	GDGCHC	2 cut(s)	309, 696
SfaNI	GCATC	1 cut(s)	384
SfcI	CTRYAG	2 cut(s)	597, 651
Sse9I	AATT	2 cut(s)	591, 868
SsiI	CCGC	3 cut(s)	35, 232, 633
SspMI	CTAG	4 cut(s)	261, 330, 782, 792
SstI	GAGCTC	1 cut(s)	696
StyD4I	CCNGG	2 cut(s)	186, 251
StyI	CCWWGG	1 cut(s)	680
TaaI	ACNGT	4 cut(s)	67, 221, 601, 643
TaiI	ACGT	2 cut(s)	669, 858
TaqI	TCGA	3 cut(s)	50, 378, 624
TaqII	GACCGA	1 cut(s)	95
TasI	AATT	2 cut(s)	591, 868
TatI	WGTACW	4 cut(s)	79, 175, 601, 864
TauI	GCSGC	1 cut(s)	37
TfiI	GAWTC	1 cut(s)	114
Tru1I	TTAA	1 cut(s)	414
Tru9I	TTAA	1 cut(s)	414
TscAI	CASTG	1 cut(s)	819
TseFI	GTSAC	1 cut(s)	227
TseI	GCWGC	3 cut(s)	19, 499, 653
Tsp45I	GTSAC	1 cut(s)	227
TspDTI	ATGAA	7 cut(s)	309, 353, 463, 500, 531, 642, 779
TspGWI	ACGGA	1 cut(s)	14
TspRI	CASTG	1 cut(s)	819
Van91I	CCANNNNNTGG	1 cut(s)	488
XbaI	TCTAGA	1 cut(s)	781
XmnI	GAANNNNTTC	2 cut(s)	118, 397
XspI	CTAG	4 cut(s)	261, 330, 782, 792
ZrmI	AGTACT	1 cut(s)	603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.