Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0010755

Physical Location & Seq

Genomic Coordinates Forward (+)

19544751 .. 19547505

Gene Structure 2755 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1237500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCTTTCAGGCCACGGCACGCGCGCCTCCCGGGCCGCAAAACGTCGTCGCCGTCCACAACGCTGGTCCTGACCTTGCTCGTCATGTTCACCTTCGCCATCCTCATTCTCCTCGCCCTCGGCATCCTCTCCGTTCCCAGCGGCTCCTCCGGCAGCTCCTCCAAGGCCAACGATCTCAGCTCGATCGTACGGCACAGCGTTGAGGGGAATGTGGAAGATGGGGCAGGGGAGCAGTGGGTCGAAGTCATCTCGTGGGAGCCGAGAGCTTTCGTGTATCACAATTTCTTGACCAAGGAGGAATGTGACTATCTAATCGATCTTGCCAAGCCGACTATGCACAAGTCAACTGTAGTTGATAGTGAAACCGGAAAGAGCAAAGATAGCAGGGTTCGTACAAGCTCGGGAACATTTTTGGCAAGAGGCCGCGATAAAATTATCAGGAACATTGAGAAAAAAATTGCTAATTTCACCTTTTTACCTGTAGAACACGGGGAGGGACTTCAGGTTCTCCACTATGAAGTTGGACAGAAGTACGAACCTCACTATGACTATTTTCAAGATGATTTTAACACTAAGAACGGAGGCCAACGTATAGGCACGGTTCTTATGTACCTCTCAGATGTTGAAGAAGGGGGTGAGACTGTGTTCCCTGCTGCCAAAGGGAATATTAGTTCTGTGCCTTGGTGGAATGAGCTATCTGAATGCGGTAAAAAGGGACTGTCGGTTAAACCCAAGATGGGTGATGCATTGCTTTTCTGGAGCATGAGGCCTGATGCAAGTCTAGATCCTTCAAGTTTACATGGCGGATGCCCTGTGATTAAGGGGAATAAGTGGTCATCTACTAAATGGATCCGTGTCAACGAGTACAAGTTCTTTTGTCGGTGTGGTACTTGTCAATATCTCAAGCCAGAGCCTTTGTACTTGTGCTTCAAGTCTCATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004656 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006464 GO:0006520 GO:0006575 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0018401 GO:0019471 GO:0019511 GO:0019538 GO:0019752 GO:0019798 GO:0021700 GO:0022622 GO:0030154 GO:0031543 GO:0031545 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0051213 GO:0055114 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:0140096 GO:1901564 GO:1901605 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3

Protein Analysis

315

Amino Acids

35.11

Weight (kDa)

8.56

Isoelectric Point (pI)

45.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	165 - 285	8.7e-09	2OG-Fe(II) oxygenase superfamily
2OG-FeII_Oxy_3	PF13640	167 - 285	2.2e-19	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17720 AT4G35810 AT4G35810 AT5G66060 AT5G66060
fragaria_vesca	FvH4_1g11100
malus_domestica	MD02G1123600.v1.1 MD15G1237500.v1.1
prunus_persica	Prupe.7G174900_v2.0.a1
pyrus_communis	pycom02g09640
rosa_chinensis	RchiOBHm_Chr2g0098371
rosa_laevigata	RLG00000016795
rosa_multiflora	Rmu_sc0023758.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144030
rosa_rugosa	Rorug02G0072600 Rorug02G0072700
rosa_samantha	Rh2AG119700 Rh2BG122800 Rh2CG124400
rosa_wichuraiana	Rw2G009380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	23, 25, 426
AciI	CCGC	5 cut(s)	37, 141, 424, 705, 804
AclWI	GGATC	3 cut(s)	779, 844, 857
AcuI	CTGAAG	1 cut(s)	485
AfaI	GTAC	7 cut(s)	189, 394, 533, 611, 866, 889, 920
AfiI	CCNNNNNNNGG	1 cut(s)	737
AgsI	TTSAA	4 cut(s)	557, 626, 792, 931
AloI	GAACNNNNNNTCC	4 cut(s)	489, 521, 655, 687
AluBI	AGCT	5 cut(s)	156, 180, 266, 399, 694
AluI	AGCT	5 cut(s)	156, 180, 266, 399, 694
Alw26I	GTCTC	2 cut(s)	632, 939
AlwI	GGATC	3 cut(s)	779, 844, 857
Ama87I	CYCGRG	2 cut(s)	31, 400
AoxI	GGCC	6 cut(s)	11, 34, 165, 421, 583, 767
ApeKI	GCWGC	2 cut(s)	153, 653
AspLEI	GCGC	2 cut(s)	25, 27
AspS9I	GGNCC	2 cut(s)	34, 67
AsuC2I	CCSGG	2 cut(s)	32, 33
AsuHPI	GGTGA	4 cut(s)	82, 460, 647, 752
AvaI	CYCGRG	2 cut(s)	31, 400
AvaII	GGWCC	1 cut(s)	67
BamHI	GGATCC	1 cut(s)	849
BarI	GAAGNNNNNNTAC	2 cut(s)	911, 943
BauI	CACGAG	1 cut(s)	250
BbvI	GCAGC	2 cut(s)	165, 640
BccI	CCATC	3 cut(s)	107, 212, 730
BceAI	ACGGC	3 cut(s)	32, 37, 206
BcnI	CCSGG	2 cut(s)	32, 33
BcoDI	GTCTC	2 cut(s)	632, 939
BfaI	CTAG	1 cut(s)	782
BfmI	CTRYAG	2 cut(s)	348, 480
BglI	GCCNNNNNGGC	1 cut(s)	33
BisI	GCNGC	5 cut(s)	37, 142, 154, 424, 654
BlsI	GCNGC	5 cut(s)	38, 143, 155, 425, 655
Bme1390I	CCNGG	2 cut(s)	32, 33
Bme18I	GGWCC	1 cut(s)	67
BmeT110I	CYCGRG	2 cut(s)	31, 400
BmgT120I	GGNCC	2 cut(s)	34, 67
BmiI	GGNNCC	3 cut(s)	145, 258, 851
BmrFI	CCNGG	2 cut(s)	32, 33
BmsI	GCATC	4 cut(s)	132, 733, 763, 797
BpmI	CTGGAG	1 cut(s)	778
BpuEI	CTTGAG	1 cut(s)	887
BpuMI	CCSGG	2 cut(s)	32, 33
Bsa29I	ATCGAT	1 cut(s)	315
BsaJI	CCNNGG	6 cut(s)	14, 31, 118, 162, 291, 680
BsaWI	WCCGGW	1 cut(s)	365
Bsc4I	CCNNNNNNNGG	1 cut(s)	737
Bse3DI	GCAATG	1 cut(s)	746
BseCI	ATCGAT	1 cut(s)	315
BseDI	CCNNGG	6 cut(s)	14, 31, 118, 162, 291, 680
BseGI	GGATG	3 cut(s)	99, 123, 812
BseLI	CCNNNNNNNGG	1 cut(s)	737
BseMI	GCAATG	1 cut(s)	746
BseMII	CTCAG	2 cut(s)	190, 630
BsePI	GCGCGC	1 cut(s)	23
BseRI	GAGGAG	3 cut(s)	101, 136, 148
BseXI	GCAGC	2 cut(s)	165, 640
BseYI	CCCAGC	1 cut(s)	137
Bsh1236I	CGCG	3 cut(s)	23, 25, 426
Bsh1285I	CGRYCG	1 cut(s)	186
BshFI	GGCC	6 cut(s)	13, 36, 167, 423, 585, 769
BshVI	ATCGAT	1 cut(s)	315
BsiEI	CGRYCG	1 cut(s)	186
BsiHKCI	CYCGRG	2 cut(s)	31, 400
BsiSI	CCGG	3 cut(s)	32, 150, 366
BsiWI	CGTACG	1 cut(s)	187
BslFI	GGGAC	2 cut(s)	510, 729
BslI	CCNNNNNNNGG	1 cut(s)	737
BsmAI	GTCTC	2 cut(s)	632, 939
BsmFI	GGGAC	2 cut(s)	510, 729
BsmI	GAATGC	1 cut(s)	707
BsnI	GGCC	6 cut(s)	13, 36, 167, 423, 585, 769
BsoBI	CYCGRG	2 cut(s)	31, 400
Bsp143I	GATC	5 cut(s)	172, 183, 316, 784, 849
BspACI	CCGC	5 cut(s)	37, 141, 424, 705, 804
BspANI	GGCC	6 cut(s)	13, 36, 167, 423, 585, 769
BspCNI	CTCAG	2 cut(s)	189, 629
BspDI	ATCGAT	1 cut(s)	315
BspFNI	CGCG	3 cut(s)	23, 25, 426
BspLI	GGNNCC	3 cut(s)	145, 258, 851
BspPI	GGATC	3 cut(s)	779, 844, 857
BsrDI	GCAATG	1 cut(s)	746
BssECI	CCNNGG	6 cut(s)	14, 31, 118, 162, 291, 680
BssHII	GCGCGC	1 cut(s)	23
BssMI	GATC	5 cut(s)	172, 183, 316, 784, 849
BssSI	CACGAG	1 cut(s)	250
BssT1I	CCWWGG	3 cut(s)	162, 291, 680
Bst2BI	CACGAG	1 cut(s)	250
Bst4CI	ACNGT	4 cut(s)	349, 601, 643, 720
BstC8I	GCNNGC	2 cut(s)	21, 25
BstDEI	CTNAG	3 cut(s)	176, 573, 616
BstDSI	CCRYGG	1 cut(s)	14
BstF5I	GGATG	3 cut(s)	99, 123, 812
BstFNI	CGCG	3 cut(s)	23, 25, 426
BstHHI	GCGC	2 cut(s)	25, 27
BstKTI	GATC	5 cut(s)	175, 186, 319, 787, 852
BstMAI	GTCTC	2 cut(s)	632, 939
BstMBI	GATC	5 cut(s)	172, 183, 316, 784, 849
BstMCI	CGRYCG	1 cut(s)	186
BstMWI	GCNNNNNNNGC	4 cut(s)	33, 150, 334, 381
BstSCI	CCNGG	2 cut(s)	30, 31
BstSFI	CTRYAG	2 cut(s)	348, 480
BstUI	CGCG	3 cut(s)	23, 25, 426
BstV1I	GCAGC	2 cut(s)	165, 640
BstX2I	RGATCY	2 cut(s)	784, 849
BstXI	CCANNNNNNTGG	1 cut(s)	64
BstYI	RGATCY	2 cut(s)	784, 849
Bsu15I	ATCGAT	1 cut(s)	315
BsuRI	GGCC	6 cut(s)	13, 36, 167, 423, 585, 769
BsuTUI	ATCGAT	1 cut(s)	315
BtgI	CCRYGG	1 cut(s)	14
BtsCI	GGATG	3 cut(s)	99, 123, 812
BtsI	GCAGTG	1 cut(s)	239
BtsIMutI	CAGTG	1 cut(s)	239
Cac8I	GCNNGC	2 cut(s)	21, 25
CfoI	GCGC	2 cut(s)	25, 27
Cfr13I	GGNCC	2 cut(s)	34, 67
Cfr9I	CCCGGG	1 cut(s)	31
ClaI	ATCGAT	1 cut(s)	315
Csp6I	GTAC	7 cut(s)	188, 393, 532, 610, 865, 888, 919
CviAII	CATG	3 cut(s)	85, 763, 800
CviQI	GTAC	7 cut(s)	188, 393, 532, 610, 865, 888, 919
DdeI	CTNAG	3 cut(s)	176, 573, 616
DpnI	GATC	5 cut(s)	174, 185, 318, 786, 851
DpnII	GATC	5 cut(s)	172, 183, 316, 784, 849
EciI	GGCGGA	1 cut(s)	819
Eco130I	CCWWGG	3 cut(s)	162, 291, 680
Eco147I	AGGCCT	1 cut(s)	769
Eco47I	GGWCC	1 cut(s)	67
Eco57I	CTGAAG	1 cut(s)	485
Eco88I	CYCGRG	2 cut(s)	31, 400
EcoT14I	CCWWGG	3 cut(s)	162, 291, 680
EcoT22I	ATGCAT	1 cut(s)	748
ErhI	CCWWGG	3 cut(s)	162, 291, 680
FaeI	CATG	3 cut(s)	88, 766, 803
FaiI	YATR	8 cut(s)	86, 335, 516, 546, 593, 608, 764, 801
FaqI	GGGAC	2 cut(s)	510, 729
FatI	CATG	3 cut(s)	84, 762, 799
Fnu4HI	GCNGC	5 cut(s)	37, 142, 154, 424, 654
FokI	GGATG	3 cut(s)	86, 110, 819
Fsp4HI	GCNGC	5 cut(s)	37, 142, 154, 424, 654
FspBI	CTAG	1 cut(s)	782
GlaI	GCGC	2 cut(s)	24, 26
GluI	GCNGC	5 cut(s)	37, 142, 154, 424, 654
GsaI	CCCAGC	1 cut(s)	141
GsuI	CTGGAG	1 cut(s)	778
HaeIII	GGCC	6 cut(s)	13, 36, 167, 423, 585, 769
HapII	CCGG	3 cut(s)	32, 150, 366
HhaI	GCGC	2 cut(s)	25, 27
Hin1II	CATG	3 cut(s)	88, 766, 803
Hin6I	GCGC	2 cut(s)	23, 25
HinP1I	GCGC	2 cut(s)	23, 25
HincII	GTYRAC	2 cut(s)	345, 859
HindII	GTYRAC	2 cut(s)	345, 859
HpaII	CCGG	3 cut(s)	32, 150, 366
HphI	GGTGA	4 cut(s)	82, 460, 647, 752
Hpy166II	GTNNAC	5 cut(s)	57, 90, 345, 797, 859
Hpy188I	TCNGA	2 cut(s)	619, 700
Hpy188III	TCNNGA	7 cut(s)	70, 286, 402, 439, 557, 757, 782
Hpy8I	GTNNAC	5 cut(s)	57, 90, 345, 797, 859
Hpy99I	CGWCG	2 cut(s)	49, 52
HpyAV	CCTTC	3 cut(s)	103, 623, 798
HpyCH4III	ACNGT	4 cut(s)	349, 601, 643, 720
HpyCH4IV	ACGT	2 cut(s)	44, 589
HpyCH4V	TGCA	3 cut(s)	337, 746, 776
HpyF10VI	GCNNNNNNNGC	4 cut(s)	33, 150, 334, 381
HpyF3I	CTNAG	3 cut(s)	176, 573, 616
HpySE526I	ACGT	2 cut(s)	44, 589
Hsp92II	CATG	3 cut(s)	88, 766, 803
HspAI	GCGC	2 cut(s)	23, 25
Kzo9I	GATC	5 cut(s)	172, 183, 316, 784, 849
LmnI	GCTCC	5 cut(s)	149, 161, 229, 256, 759
Lsp1109I	GCAGC	2 cut(s)	165, 640
LweI	GCATC	4 cut(s)	132, 733, 763, 797
MaeI	CTAG	1 cut(s)	782
MaeII	ACGT	2 cut(s)	44, 589
MaeIII	GTNAC	1 cut(s)	302
MalI	GATC	5 cut(s)	174, 185, 318, 786, 851
MboI	GATC	5 cut(s)	172, 183, 316, 784, 849
MboII	GAAGA	2 cut(s)	227, 638
MflI	RGATCY	2 cut(s)	784, 849
MluCI	AATT	4 cut(s)	280, 432, 456, 463
MmeI	TCCRAC	1 cut(s)	502
Mph1103I	ATGCAT	1 cut(s)	748
MseI	TTAA	3 cut(s)	567, 726, 819
MspA1I	CMGCKG	1 cut(s)	141
MspI	CCGG	3 cut(s)	32, 150, 366
MspR9I	CCNGG	2 cut(s)	32, 33
Mva1269I	GAATGC	1 cut(s)	707
MvnI	CGCG	3 cut(s)	23, 25, 426
MwoI	GCNNNNNNNGC	4 cut(s)	33, 150, 334, 381
NciI	CCSGG	2 cut(s)	32, 33
NdeII	GATC	5 cut(s)	172, 183, 316, 784, 849
NlaIII	CATG	3 cut(s)	88, 766, 803
NlaIV	GGNNCC	3 cut(s)	145, 258, 851
NmeAIII	GCCGAG	2 cut(s)	99, 285
NmuCI	GTSAC	1 cut(s)	302
NsiI	ATGCAT	1 cut(s)	748
PauI	GCGCGC	1 cut(s)	23
PceI	AGGCCT	1 cut(s)	769
PcsI	WCGNNNNNNNCGW	2 cut(s)	50, 257
PctI	GAATGC	1 cut(s)	707
Pfl23II	CGTACG	1 cut(s)	187
PkrI	GCNGC	5 cut(s)	38, 143, 155, 425, 655
Ple19I	CGATCG	1 cut(s)	186
PspFI	CCCAGC	1 cut(s)	137
PspLI	CGTACG	1 cut(s)	187
PspN4I	GGNNCC	3 cut(s)	145, 258, 851
PspPI	GGNCC	2 cut(s)	34, 67
PsuI	RGATCY	2 cut(s)	784, 849
PteI	GCGCGC	1 cut(s)	23
PvuI	CGATCG	1 cut(s)	186
RsaI	GTAC	7 cut(s)	189, 394, 533, 611, 866, 889, 920
RsaNI	GTAC	7 cut(s)	188, 393, 532, 610, 865, 888, 919
SaqAI	TTAA	3 cut(s)	567, 726, 819
SatI	GCNGC	5 cut(s)	37, 142, 154, 424, 654
Sau3AI	GATC	5 cut(s)	172, 183, 316, 784, 849
Sau96I	GGNCC	2 cut(s)	34, 67
ScrFI	CCNGG	2 cut(s)	32, 33
SfaNI	GCATC	4 cut(s)	132, 733, 763, 797
SfcI	CTRYAG	2 cut(s)	348, 480
SinI	GGWCC	1 cut(s)	67
SmaI	CCCGGG	1 cut(s)	33
SmlI	CTYRAG	1 cut(s)	902
SmoI	CTYRAG	1 cut(s)	902
Sse9I	AATT	4 cut(s)	280, 432, 456, 463
SseBI	AGGCCT	1 cut(s)	769
SsiI	CCGC	5 cut(s)	37, 141, 424, 705, 804
SspI	AATATT	1 cut(s)	667
SspMI	CTAG	1 cut(s)	782
StuI	AGGCCT	1 cut(s)	769
StyD4I	CCNGG	2 cut(s)	30, 31
StyI	CCWWGG	3 cut(s)	162, 291, 680
TaaI	ACNGT	4 cut(s)	349, 601, 643, 720
TaiI	ACGT	2 cut(s)	47, 592
TaqI	TCGA	3 cut(s)	182, 240, 315
TasI	AATT	4 cut(s)	280, 432, 456, 463
TatI	WGTACW	2 cut(s)	864, 918
TauI	GCSGC	3 cut(s)	39, 144, 426
Tru1I	TTAA	3 cut(s)	567, 726, 819
Tru9I	TTAA	3 cut(s)	567, 726, 819
TscAI	CASTG	1 cut(s)	239
TseFI	GTSAC	1 cut(s)	302
TseI	GCWGC	2 cut(s)	153, 653
Tsp45I	GTSAC	1 cut(s)	302
TspDTI	ATGAA	1 cut(s)	531
TspGWI	ACGGA	3 cut(s)	121, 594, 842
TspMI	CCCGGG	1 cut(s)	31
TspRI	CASTG	1 cut(s)	239
VpaK11BI	GGWCC	1 cut(s)	67
XbaI	TCTAGA	1 cut(s)	781
XcmI	CCANNNNNNNNNTGG	1 cut(s)	518
XmaI	CCCGGG	1 cut(s)	31
XspI	CTAG	1 cut(s)	782
Zsp2I	ATGCAT	1 cut(s)	748

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.