Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0010755

Physical Location & Seq

Genomic Coordinates Forward (+)

6051791 .. 6054601

Gene Structure 2811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g11100.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGCCGTAAAGCCCAGGCACGGCCGCGTCGCCGGTCGAAAATCGTCGTCGTCGTCCTCGACTCTGGTCCTCACCTTGCTCGTCATGTTCACCTTCGTCATTCTCATTCTCCTCGCCCTCGGAATCCTCTCCGTCCCGAGCGGCTCCTCCGGCGACTCGCCCAAGGCCAACGATCTCAGCTCGATTGTAAGGAACAGCGCCGAGAGGATTCAGGGAGATGATCGGAGCAAGGAGCAGTGGGTTGAAGCCATCTCGTGGGAGCCTAGAGCTTTTGTGTATCACAATTTCTTGACACAACAGGAGTGTGATTATCTGATCGATCTAGCGAAGCCTCATATGGAAAAGTCGACTGTGGTTGACAGTGAAACTGGAAAGAGCAAAGATAGCAGGGTTCGTACGAGCTCTGGAACATTTTTGTCTAGAGGACGGGATAAGGTTATCAGGAATATTGAGAGAAAGATTGCTAATTTCACCTTTCTACCTGTAGAACACGGGGAGGGCCTTCAAATTCTCCACTATGAAGTGGGACAGAAGTATGAGCCTCACTTTGACTATTTTCAGGATGAATATAACACTAGGAATGGAGGTCAACGGATGGCTACCATTCTGATGTATCTCTCAGATGTTGAAGAAGGGGGTGAGACTGTGTTTCCTAATGCAAAAGGGAATATAAGTTCTGTGCCTTGGTGGGATGAGCTATCCGAGTGCGGGAAGAAAGGACTTTCTGTTAAACCTAAGATGGGAGATGCATTGCTTTTCTGGAGCATGAATCCTGATGCAACTTTAGATCCTTCAAGTTTGCATGGTGGGTGTCCTGTCATCAGGGGGAATAAATGGTCATCTACTAAATGGATTCGTGTGGACGAGTACAAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004656 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006464 GO:0006520 GO:0006575 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0018401 GO:0019471 GO:0019511 GO:0019538 GO:0019752 GO:0019798 GO:0021700 GO:0022622 GO:0030154 GO:0031543 GO:0031545 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0051213 GO:0055114 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:0140096 GO:1901564 GO:1901605 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3

Protein Analysis

293

Amino Acids

32.71

Weight (kDa)

7.06

Isoelectric Point (pI)

46.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	166 - 286	1.2e-09	2OG-Fe(II) oxygenase superfamily
2OG-FeII_Oxy_3	PF13640	168 - 286	1.8e-19	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0010755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17720 AT4G35810 AT4G35810 AT5G66060 AT5G66060
fragaria_vesca	FvH4_1g11100
malus_domestica	MD02G1123600.v1.1 MD15G1237500.v1.1
prunus_persica	Prupe.7G174900_v2.0.a1
pyrus_communis	pycom02g09640
rosa_chinensis	RchiOBHm_Chr2g0098371
rosa_laevigata	RLG00000016795
rosa_multiflora	Rmu_sc0023758.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144030
rosa_rugosa	Rorug02G0072600 Rorug02G0072700
rosa_samantha	Rh2AG119700 Rh2BG122800 Rh2CG124400
rosa_wichuraiana	Rw2G009380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	255
AccBSI	CCGCTC	1 cut(s)	141
AccI	GTMKAC	1 cut(s)	347
AccII	CGCG	1 cut(s)	27
AciI	CCGC	3 cut(s)	25, 141, 708
AclWI	GGATC	1 cut(s)	782
AcoI	YGGCCR	2 cut(s)	3, 22
AcsI	RAATTY	1 cut(s)	507
AfaI	GTAC	2 cut(s)	397, 869
AfiI	CCNNNNNNNGG	4 cut(s)	20, 255, 708, 740
AgsI	TTSAA	4 cut(s)	245, 506, 629, 795
AjnI	CCWGG	1 cut(s)	14
AloI	GAACNNNNNNTCC	2 cut(s)	658, 690
AluBI	AGCT	4 cut(s)	180, 269, 402, 697
AluI	AGCT	4 cut(s)	180, 269, 402, 697
Alw21I	GWGCWC	1 cut(s)	404
Alw26I	GTCTC	1 cut(s)	635
AlwI	GGATC	1 cut(s)	782
Ama87I	CYCGRG	1 cut(s)	136
AoxI	GGCC	4 cut(s)	3, 22, 165, 499
ApoI	RAATTY	1 cut(s)	507
AspLEI	GCGC	1 cut(s)	200
AspS9I	GGNCC	2 cut(s)	67, 499
AsuHPI	GGTGA	4 cut(s)	64, 82, 463, 650
AvaI	CYCGRG	1 cut(s)	136
AvaII	GGWCC	1 cut(s)	67
BanII	GRGCYC	1 cut(s)	404
BauI	CACGAG	1 cut(s)	253
Bbv12I	GWGCWC	1 cut(s)	404
BccI	CCATC	3 cut(s)	257, 589, 733
BceAI	ACGGC	1 cut(s)	37
BciT130I	CCWGG	1 cut(s)	16
BcoDI	GTCTC	1 cut(s)	635
BfaI	CTAG	4 cut(s)	264, 323, 420, 576
BfmI	CTRYAG	1 cut(s)	483
BfoI	RGCGCY	1 cut(s)	201
BisI	GCNGC	2 cut(s)	25, 142
BlsI	GCNGC	2 cut(s)	26, 143
Bme1390I	CCNGG	1 cut(s)	16
Bme18I	GGWCC	1 cut(s)	67
BmeT110I	CYCGRG	1 cut(s)	136
BmgT120I	GGNCC	2 cut(s)	67, 499
BmiI	GGNNCC	2 cut(s)	145, 261
BmrFI	CCNGG	1 cut(s)	16
BmsI	GCATC	2 cut(s)	736, 766
BoxI	GACNNNNGTC	1 cut(s)	65
BpmI	CTGGAG	1 cut(s)	781
Bsa29I	ATCGAT	1 cut(s)	318
BsaJI	CCNNGG	4 cut(s)	14, 118, 162, 683
Bsc4I	CCNNNNNNNGG	4 cut(s)	20, 255, 708, 740
Bse118I	RCCGGY	1 cut(s)	32
Bse1I	ACTGG	1 cut(s)	373
Bse3DI	GCAATG	1 cut(s)	749
BseBI	CCWGG	1 cut(s)	16
BseCI	ATCGAT	1 cut(s)	318
BseDI	CCNNGG	4 cut(s)	14, 118, 162, 683
BseGI	GGATG	3 cut(s)	568, 600, 697
BseLI	CCNNNNNNNGG	4 cut(s)	20, 255, 708, 740
BseMI	GCAATG	1 cut(s)	749
BseMII	CTCAG	2 cut(s)	190, 633
BseNI	ACTGG	1 cut(s)	373
BseRI	GAGGAG	2 cut(s)	101, 136
BseX3I	CGGCCG	1 cut(s)	22
Bsh1236I	CGCG	1 cut(s)	27
Bsh1285I	CGRYCG	2 cut(s)	25, 37
BshFI	GGCC	4 cut(s)	5, 24, 167, 501
BshVI	ATCGAT	1 cut(s)	318
BsiEI	CGRYCG	2 cut(s)	25, 37
BsiHKAI	GWGCWC	1 cut(s)	404
BsiHKCI	CYCGRG	1 cut(s)	136
BsiSI	CCGG	2 cut(s)	33, 150
BsiWI	CGTACG	1 cut(s)	395
BslFI	GGGAC	2 cut(s)	119, 540
BslI	CCNNNNNNNGG	4 cut(s)	20, 255, 708, 740
BsmAI	GTCTC	1 cut(s)	635
BsmFI	GGGAC	2 cut(s)	119, 540
BsnI	GGCC	4 cut(s)	5, 24, 167, 501
BsoBI	CYCGRG	1 cut(s)	136
Bsp1286I	GDGCHC	1 cut(s)	404
Bsp143I	GATC	5 cut(s)	172, 220, 315, 319, 787
BspACI	CCGC	3 cut(s)	25, 141, 708
BspANI	GGCC	4 cut(s)	5, 24, 167, 501
BspCNI	CTCAG	2 cut(s)	189, 632
BspDI	ATCGAT	1 cut(s)	318
BspFNI	CGCG	1 cut(s)	27
BspLI	GGNNCC	2 cut(s)	145, 261
BspPI	GGATC	1 cut(s)	782
BsrBI	CCGCTC	1 cut(s)	141
BsrDI	GCAATG	1 cut(s)	749
BsrFI	RCCGGY	1 cut(s)	32
BsrI	ACTGG	1 cut(s)	373
BssAI	RCCGGY	1 cut(s)	32
BssECI	CCNNGG	4 cut(s)	14, 118, 162, 683
BssMI	GATC	5 cut(s)	172, 220, 315, 319, 787
BssSI	CACGAG	1 cut(s)	253
BssT1I	CCWWGG	2 cut(s)	162, 683
Bst2BI	CACGAG	1 cut(s)	253
Bst2UI	CCWGG	1 cut(s)	16
Bst4CI	ACNGT	3 cut(s)	352, 362, 646
BstDEI	CTNAG	3 cut(s)	176, 619, 735
BstF5I	GGATG	3 cut(s)	568, 600, 697
BstFNI	CGCG	1 cut(s)	27
BstH2I	RGCGCY	1 cut(s)	201
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	5 cut(s)	175, 223, 318, 322, 790
BstMAI	GTCTC	1 cut(s)	635
BstMBI	GATC	5 cut(s)	172, 220, 315, 319, 787
BstMCI	CGRYCG	2 cut(s)	25, 37
BstMWI	GCNNNNNNNGC	2 cut(s)	150, 384
BstNI	CCWGG	1 cut(s)	16
BstPAI	GACNNNNGTC	1 cut(s)	65
BstSCI	CCNGG	1 cut(s)	14
BstSFI	CTRYAG	1 cut(s)	483
BstUI	CGCG	1 cut(s)	27
BstX2I	RGATCY	1 cut(s)	787
BstYI	RGATCY	1 cut(s)	787
BstZI	CGGCCG	1 cut(s)	22
Bsu15I	ATCGAT	1 cut(s)	318
BsuRI	GGCC	4 cut(s)	5, 24, 167, 501
BsuTUI	ATCGAT	1 cut(s)	318
BtsCI	GGATG	3 cut(s)	568, 600, 697
BtsI	GCAGTG	1 cut(s)	242
BtsIMutI	CAGTG	2 cut(s)	242, 367
CfoI	GCGC	1 cut(s)	200
Cfr10I	RCCGGY	1 cut(s)	32
Cfr13I	GGNCC	2 cut(s)	67, 499
ClaI	ATCGAT	1 cut(s)	318
CseI	GACGC	1 cut(s)	16
Csp6I	GTAC	2 cut(s)	396, 868
CviAII	CATG	3 cut(s)	85, 766, 803
CviQI	GTAC	2 cut(s)	396, 868
DdeI	CTNAG	3 cut(s)	176, 619, 735
DpnI	GATC	5 cut(s)	174, 222, 317, 321, 789
DpnII	GATC	5 cut(s)	172, 220, 315, 319, 787
EaeI	YGGCCR	2 cut(s)	3, 22
EagI	CGGCCG	1 cut(s)	22
Ecl136II	GAGCTC	1 cut(s)	402
EclXI	CGGCCG	1 cut(s)	22
Eco130I	CCWWGG	2 cut(s)	162, 683
Eco24I	GRGCYC	1 cut(s)	404
Eco47I	GGWCC	1 cut(s)	67
Eco52I	CGGCCG	1 cut(s)	22
Eco53kI	GAGCTC	1 cut(s)	402
Eco88I	CYCGRG	1 cut(s)	136
EcoICRI	GAGCTC	1 cut(s)	402
EcoO109I	RGGNCCY	1 cut(s)	499
EcoRII	CCWGG	1 cut(s)	14
EcoT14I	CCWWGG	2 cut(s)	162, 683
EcoT22I	ATGCAT	1 cut(s)	751
EcoT38I	GRGCYC	1 cut(s)	404
ErhI	CCWWGG	2 cut(s)	162, 683
FaeI	CATG	3 cut(s)	88, 769, 806
FaiI	YATR	9 cut(s)	86, 336, 338, 519, 537, 570, 671, 767, 804
FaqI	GGGAC	2 cut(s)	119, 540
FatI	CATG	3 cut(s)	84, 765, 802
FauI	CCCGC	1 cut(s)	701
FauNDI	CATATG	1 cut(s)	336
FblI	GTMKAC	1 cut(s)	347
Fnu4HI	GCNGC	2 cut(s)	25, 142
FokI	GGATG	3 cut(s)	575, 607, 704
FriOI	GRGCYC	1 cut(s)	404
Fsp4HI	GCNGC	2 cut(s)	25, 142
FspBI	CTAG	4 cut(s)	264, 323, 420, 576
GlaI	GCGC	1 cut(s)	199
GluI	GCNGC	2 cut(s)	25, 142
GsuI	CTGGAG	1 cut(s)	781
HaeII	RGCGCY	1 cut(s)	201
HaeIII	GGCC	4 cut(s)	5, 24, 167, 501
HapII	CCGG	2 cut(s)	33, 150
HgaI	GACGC	1 cut(s)	16
HhaI	GCGC	1 cut(s)	200
Hin1II	CATG	3 cut(s)	88, 769, 806
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HincII	GTYRAC	3 cut(s)	348, 358, 590
HindII	GTYRAC	3 cut(s)	348, 358, 590
HinfI	GANTC	6 cut(s)	61, 123, 155, 208, 769, 853
HpaII	CCGG	2 cut(s)	33, 150
HphI	GGTGA	4 cut(s)	64, 82, 463, 650
Hpy166II	GTNNAC	5 cut(s)	90, 348, 358, 590, 862
Hpy188I	TCNGA	6 cut(s)	122, 225, 315, 609, 622, 703
Hpy188III	TCNNGA	8 cut(s)	136, 289, 405, 420, 442, 560, 760, 773
Hpy8I	GTNNAC	5 cut(s)	90, 348, 358, 590, 862
Hpy99I	CGWCG	4 cut(s)	32, 49, 52, 55
HpyAV	CCTTC	4 cut(s)	103, 512, 626, 801
HpyCH4III	ACNGT	3 cut(s)	352, 362, 646
HpyCH4V	TGCA	4 cut(s)	659, 749, 779, 802
HpyF10VI	GCNNNNNNNGC	2 cut(s)	150, 384
HpyF3I	CTNAG	3 cut(s)	176, 619, 735
Hsp92II	CATG	3 cut(s)	88, 769, 806
HspAI	GCGC	1 cut(s)	198
Kzo9I	GATC	5 cut(s)	172, 220, 315, 319, 787
LmnI	GCTCC	5 cut(s)	149, 225, 232, 259, 762
LweI	GCATC	2 cut(s)	736, 766
MaeI	CTAG	4 cut(s)	264, 323, 420, 576
MalI	GATC	5 cut(s)	174, 222, 317, 321, 789
MbiI	CCGCTC	1 cut(s)	141
MboI	GATC	5 cut(s)	172, 220, 315, 319, 787
MboII	GAAGA	2 cut(s)	641, 724
MflI	RGATCY	1 cut(s)	787
MhlI	GDGCHC	1 cut(s)	404
MluCI	AATT	3 cut(s)	283, 466, 507
MlyI	GAGTC	2 cut(s)	55, 149
Mph1103I	ATGCAT	1 cut(s)	751
MseI	TTAA	1 cut(s)	729
MslI	CAYNNNNRTG	1 cut(s)	608
MspI	CCGG	2 cut(s)	33, 150
MspR9I	CCNGG	1 cut(s)	16
MvaI	CCWGG	1 cut(s)	16
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	2 cut(s)	150, 384
NdeI	CATATG	1 cut(s)	336
NdeII	GATC	5 cut(s)	172, 220, 315, 319, 787
NlaIII	CATG	3 cut(s)	88, 769, 806
NlaIV	GGNNCC	2 cut(s)	145, 261
NmeAIII	GCCGAG	1 cut(s)	226
NsiI	ATGCAT	1 cut(s)	751
PcsI	WCGNNNNNNNCGW	2 cut(s)	50, 56
PfeI	GAWTC	4 cut(s)	123, 208, 769, 853
Pfl23II	CGTACG	1 cut(s)	395
PflMI	CCANNNNNTGG	1 cut(s)	255
PkrI	GCNGC	2 cut(s)	26, 143
PleI	GAGTC	2 cut(s)	55, 149
PpsI	GAGTC	2 cut(s)	55, 149
PshAI	GACNNNNGTC	1 cut(s)	65
Psp124BI	GAGCTC	1 cut(s)	404
Psp6I	CCWGG	1 cut(s)	14
PspGI	CCWGG	1 cut(s)	14
PspLI	CGTACG	1 cut(s)	395
PspN4I	GGNNCC	2 cut(s)	145, 261
PspPI	GGNCC	2 cut(s)	67, 499
PsuI	RGATCY	1 cut(s)	787
RsaI	GTAC	2 cut(s)	397, 869
RsaNI	GTAC	2 cut(s)	396, 868
RseI	CAYNNNNRTG	1 cut(s)	608
SacI	GAGCTC	1 cut(s)	404
SalI	GTCGAC	1 cut(s)	346
SaqAI	TTAA	1 cut(s)	729
SatI	GCNGC	2 cut(s)	25, 142
Sau3AI	GATC	5 cut(s)	172, 220, 315, 319, 787
Sau96I	GGNCC	2 cut(s)	67, 499
SchI	GAGTC	2 cut(s)	55, 149
ScrFI	CCNGG	1 cut(s)	16
SduI	GDGCHC	1 cut(s)	404
SfaNI	GCATC	2 cut(s)	736, 766
SfcI	CTRYAG	1 cut(s)	483
SinI	GGWCC	1 cut(s)	67
SmiMI	CAYNNNNRTG	1 cut(s)	608
Sse9I	AATT	3 cut(s)	283, 466, 507
SsiI	CCGC	3 cut(s)	25, 141, 708
SspI	AATATT	1 cut(s)	448
SspMI	CTAG	4 cut(s)	264, 323, 420, 576
SstI	GAGCTC	1 cut(s)	404
StyD4I	CCNGG	1 cut(s)	14
StyI	CCWWGG	2 cut(s)	162, 683
TaaI	ACNGT	3 cut(s)	352, 362, 646
TaqI	TCGA	5 cut(s)	37, 59, 182, 318, 347
TasI	AATT	3 cut(s)	283, 466, 507
TatI	WGTACW	1 cut(s)	867
TauI	GCSGC	2 cut(s)	27, 144
TfiI	GAWTC	4 cut(s)	123, 208, 769, 853
Tru1I	TTAA	1 cut(s)	729
Tru9I	TTAA	1 cut(s)	729
TscAI	CASTG	2 cut(s)	242, 367
TspDTI	ATGAA	3 cut(s)	534, 579, 782
TspGWI	ACGGA	2 cut(s)	121, 607
TspRI	CASTG	2 cut(s)	242, 367
Van91I	CCANNNNNTGG	1 cut(s)	255
VpaK11BI	GGWCC	1 cut(s)	67
XapI	RAATTY	1 cut(s)	507
XbaI	TCTAGA	1 cut(s)	419
XmiI	GTMKAC	1 cut(s)	347
XspI	CTAG	4 cut(s)	264, 323, 420, 576
Zsp2I	ATGCAT	1 cut(s)	751

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.