Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0010755

Physical Location & Seq

Genomic Coordinates Forward (+)

10034007 .. 10035851

Gene Structure 1845 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016795

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGCGGTTAAGCCCAGGCACGCGCGCGTCGCGGGTCGCAAAACGACGTCGTCGTCCTCGACTCTGGTGCTGACCTTGCTCGTCATGTTCACCTTCGTCATTCTCATTCTCCTCGCCCTCGGAATCCTCTCCGTTCCGAGCGGCTCCTCCGGCGACTCGCCCAAGGCCAACGATCTCAGCTCGATTCTGCGCAACGCCGAGAGGATTCAGGGAAATGACGGAAGCAAGGAGCAGTGGGTTGAAGTCATCTCGTGGGAGCCAAGAGCTTTTGTTTATCACAATTTCTTGACACAGCAGGAATGTGATTATCTAATCAATCTAGCCAAGCCTCATATGGAAAAGTCAACAGTAGTTGACAGTGAAACTGGAAAGAGCAAAGATAGCAGGGTTCGTACAAGCTCTGGAACATTTTTGGCTAGAGGACGGGATAAGGTTATCAGGAACATTGAGAAAAAGATTGCTAATTTCACCTTTCTACCTGTAGAACACGGGGAGGGACTTCAAATTCTCCACTATGAAGTCGGACAGAAGTATGAGCCTCACTTTGACTATTTTCAGGATGAATATAACACTAGGAATGGAGGTCAACGTATAGCTACAGTTCTAATGTATCTCTCAGATGTTGAAGAAGGGGGTGAGACTGTGTTCCCTGCTGCCAAAGGGAATATAAGTTCTGTGCCTTGGTGGGATGAGCTATCCGAATGTGGGAAAAAAGGACTCTCTGTTAAACCTAAGATGGGAGATGCTCTGCTTTTCTGGAGCATGAATCCTGATGCAACTTTAGATCCTTCAAGTTTGCATGGTGGATGCCCTGTAATCAGGGGGAATAAATGGTCATCTACTAAATGGATTCGTGTGGACGAGTACAAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004656 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006464 GO:0006520 GO:0006575 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0018401 GO:0019471 GO:0019511 GO:0019538 GO:0019752 GO:0019798 GO:0021700 GO:0022622 GO:0030154 GO:0031543 GO:0031545 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0051213 GO:0055114 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:0140096 GO:1901564 GO:1901605 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3

Protein Analysis

292

Amino Acids

32.5

Weight (kDa)

7.72

Isoelectric Point (pI)

44.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	165 - 285	3.9e-09	2OG-Fe(II) oxygenase superfamily
2OG-FeII_Oxy_3	PF13640	167 - 285	1.4e-19	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17720 AT4G35810 AT4G35810 AT5G66060 AT5G66060
fragaria_vesca	FvH4_1g11100
malus_domestica	MD02G1123600.v1.1 MD15G1237500.v1.1
prunus_persica	Prupe.7G174900_v2.0.a1
pyrus_communis	pycom02g09640
rosa_chinensis	RchiOBHm_Chr2g0098371
rosa_laevigata	RLG00000016795
rosa_multiflora	Rmu_sc0023758.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144030
rosa_rugosa	Rorug02G0072600 Rorug02G0072700
rosa_samantha	Rh2AG119700 Rh2BG122800 Rh2CG124400
rosa_wichuraiana	Rw2G009380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	52
AatII	GACGTC	1 cut(s)	50
Acc16I	TGCGCA	1 cut(s)	191
AccBSI	CCGCTC	1 cut(s)	141
AccII	CGCG	4 cut(s)	23, 25, 27, 32
AciI	CCGC	3 cut(s)	5, 32, 141
AclWI	GGATC	1 cut(s)	779
AcsI	RAATTY	2 cut(s)	504, 870
AcyI	GRCGYC	1 cut(s)	47
AfaI	GTAC	2 cut(s)	394, 866
AfiI	CCNNNNNNNGG	2 cut(s)	705, 737
AgsI	TTSAA	4 cut(s)	242, 503, 626, 792
AjnI	CCWGG	1 cut(s)	14
AloI	GAACNNNNNNTCC	2 cut(s)	655, 687
AluBI	AGCT	5 cut(s)	180, 266, 399, 596, 694
AluI	AGCT	5 cut(s)	180, 266, 399, 596, 694
Alw26I	GTCTC	1 cut(s)	632
AlwI	GGATC	1 cut(s)	779
AoxI	GGCC	1 cut(s)	165
ApeKI	GCWGC	1 cut(s)	653
ApoI	RAATTY	2 cut(s)	504, 870
AspLEI	GCGC	3 cut(s)	25, 27, 192
AsuHPI	GGTGA	3 cut(s)	82, 460, 647
BauI	CACGAG	1 cut(s)	250
BbvI	GCAGC	1 cut(s)	640
BccI	CCATC	1 cut(s)	730
BcgI	CGANNNNNNTGC	2 cut(s)	49, 83
BciT130I	CCWGG	1 cut(s)	16
BcoDI	GTCTC	1 cut(s)	632
BfaI	CTAG	3 cut(s)	320, 417, 573
BfmI	CTRYAG	2 cut(s)	480, 597
BisI	GCNGC	2 cut(s)	142, 654
BlsI	GCNGC	2 cut(s)	143, 655
Bme1390I	CCNGG	1 cut(s)	16
BmiI	GGNNCC	2 cut(s)	145, 258
BmrFI	CCNGG	1 cut(s)	16
BmsI	GCATC	3 cut(s)	733, 763, 797
BpmI	CTGGAG	1 cut(s)	778
BsaHI	GRCGYC	1 cut(s)	47
BsaJI	CCNNGG	4 cut(s)	14, 118, 162, 680
Bsc4I	CCNNNNNNNGG	2 cut(s)	705, 737
Bse1I	ACTGG	1 cut(s)	370
BseBI	CCWGG	1 cut(s)	16
BseDI	CCNNGG	4 cut(s)	14, 118, 162, 680
BseGI	GGATG	3 cut(s)	565, 694, 812
BseLI	CCNNNNNNNGG	2 cut(s)	705, 737
BseMII	CTCAG	2 cut(s)	190, 630
BseNI	ACTGG	1 cut(s)	370
BsePI	GCGCGC	1 cut(s)	23
BseRI	GAGGAG	2 cut(s)	101, 136
BseXI	GCAGC	1 cut(s)	640
Bsh1236I	CGCG	4 cut(s)	23, 25, 27, 32
BshFI	GGCC	1 cut(s)	167
BsiSI	CCGG	1 cut(s)	150
BslFI	GGGAC	1 cut(s)	510
BslI	CCNNNNNNNGG	2 cut(s)	705, 737
BsmAI	GTCTC	1 cut(s)	632
BsmFI	GGGAC	1 cut(s)	510
BsnI	GGCC	1 cut(s)	167
Bsp143I	GATC	2 cut(s)	172, 784
BspACI	CCGC	3 cut(s)	5, 32, 141
BspANI	GGCC	1 cut(s)	167
BspCNI	CTCAG	2 cut(s)	189, 629
BspFNI	CGCG	4 cut(s)	23, 25, 27, 32
BspLI	GGNNCC	2 cut(s)	145, 258
BspPI	GGATC	1 cut(s)	779
BsrBI	CCGCTC	1 cut(s)	141
BsrI	ACTGG	1 cut(s)	370
BssECI	CCNNGG	4 cut(s)	14, 118, 162, 680
BssHII	GCGCGC	1 cut(s)	23
BssMI	GATC	2 cut(s)	172, 784
BssNI	GRCGYC	1 cut(s)	47
BssSI	CACGAG	1 cut(s)	250
BssT1I	CCWWGG	2 cut(s)	162, 680
Bst2BI	CACGAG	1 cut(s)	250
Bst2UI	CCWGG	1 cut(s)	16
Bst4CI	ACNGT	4 cut(s)	349, 359, 601, 643
BstACI	GRCGYC	1 cut(s)	47
BstC8I	GCNNGC	2 cut(s)	21, 25
BstDEI	CTNAG	3 cut(s)	176, 616, 732
BstF5I	GGATG	3 cut(s)	565, 694, 812
BstFNI	CGCG	4 cut(s)	23, 25, 27, 32
BstHHI	GCGC	3 cut(s)	25, 27, 192
BstKTI	GATC	2 cut(s)	175, 787
BstMAI	GTCTC	1 cut(s)	632
BstMBI	GATC	2 cut(s)	172, 784
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 76, 150, 381
BstNI	CCWGG	1 cut(s)	16
BstSCI	CCNGG	1 cut(s)	14
BstSFI	CTRYAG	2 cut(s)	480, 597
BstUI	CGCG	4 cut(s)	23, 25, 27, 32
BstV1I	GCAGC	1 cut(s)	640
BstX2I	RGATCY	1 cut(s)	784
BstYI	RGATCY	1 cut(s)	784
BsuRI	GGCC	1 cut(s)	167
BtsCI	GGATG	3 cut(s)	565, 694, 812
BtsI	GCAGTG	1 cut(s)	239
BtsIMutI	CAGTG	2 cut(s)	239, 364
Cac8I	GCNNGC	2 cut(s)	21, 25
CfoI	GCGC	3 cut(s)	25, 27, 192
CseI	GACGC	1 cut(s)	16
Csp6I	GTAC	2 cut(s)	393, 865
CviAII	CATG	3 cut(s)	85, 763, 800
CviQI	GTAC	2 cut(s)	393, 865
DdeI	CTNAG	3 cut(s)	176, 616, 732
DpnI	GATC	2 cut(s)	174, 786
DpnII	GATC	2 cut(s)	172, 784
DrdI	GACNNNNNNGTC	1 cut(s)	52
DseDI	GACNNNNNNGTC	1 cut(s)	52
Eco130I	CCWWGG	2 cut(s)	162, 680
EcoRII	CCWGG	1 cut(s)	14
EcoT14I	CCWWGG	2 cut(s)	162, 680
ErhI	CCWWGG	2 cut(s)	162, 680
FaeI	CATG	3 cut(s)	88, 766, 803
FaqI	GGGAC	1 cut(s)	510
FatI	CATG	3 cut(s)	84, 762, 799
FauI	CCCGC	1 cut(s)	25
FauNDI	CATATG	1 cut(s)	333
Fnu4HI	GCNGC	2 cut(s)	142, 654
FokI	GGATG	3 cut(s)	572, 701, 819
Fsp4HI	GCNGC	2 cut(s)	142, 654
FspBI	CTAG	3 cut(s)	320, 417, 573
FspI	TGCGCA	1 cut(s)	191
GlaI	GCGC	3 cut(s)	24, 26, 191
GluI	GCNGC	2 cut(s)	142, 654
GsuI	CTGGAG	1 cut(s)	778
HaeIII	GGCC	1 cut(s)	167
HapII	CCGG	1 cut(s)	150
HgaI	GACGC	1 cut(s)	16
HhaI	GCGC	3 cut(s)	25, 27, 192
Hin1I	GRCGYC	1 cut(s)	47
Hin1II	CATG	3 cut(s)	88, 766, 803
Hin6I	GCGC	3 cut(s)	23, 25, 190
HinP1I	GCGC	3 cut(s)	23, 25, 190
HincII	GTYRAC	3 cut(s)	345, 355, 587
HindII	GTYRAC	3 cut(s)	345, 355, 587
HinfI	GANTC	8 cut(s)	61, 123, 155, 184, 205, 717, 766, 850
HpaII	CCGG	1 cut(s)	150
HphI	GGTGA	3 cut(s)	82, 460, 647
Hpy166II	GTNNAC	5 cut(s)	90, 345, 355, 587, 859
Hpy188I	TCNGA	5 cut(s)	122, 138, 524, 619, 700
Hpy188III	TCNNGA	6 cut(s)	286, 402, 439, 557, 757, 770
Hpy8I	GTNNAC	5 cut(s)	90, 345, 355, 587, 859
Hpy99I	CGWCG	4 cut(s)	32, 49, 52, 55
HpyAV	CCTTC	3 cut(s)	103, 623, 798
HpyCH4III	ACNGT	4 cut(s)	349, 359, 601, 643
HpyCH4IV	ACGT	2 cut(s)	47, 589
HpyCH4V	TGCA	2 cut(s)	776, 799
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 76, 150, 381
HpyF3I	CTNAG	3 cut(s)	176, 616, 732
HpySE526I	ACGT	2 cut(s)	47, 589
Hsp92I	GRCGYC	1 cut(s)	47
Hsp92II	CATG	3 cut(s)	88, 766, 803
HspAI	GCGC	3 cut(s)	23, 25, 190
Kzo9I	GATC	2 cut(s)	172, 784
LmnI	GCTCC	4 cut(s)	149, 229, 256, 759
Lsp1109I	GCAGC	1 cut(s)	640
LweI	GCATC	3 cut(s)	733, 763, 797
MaeI	CTAG	3 cut(s)	320, 417, 573
MaeII	ACGT	2 cut(s)	47, 589
MalI	GATC	2 cut(s)	174, 786
MauBI	CGCGCGCG	1 cut(s)	23
MbiI	CCGCTC	1 cut(s)	141
MboI	GATC	2 cut(s)	172, 784
MboII	GAAGA	1 cut(s)	638
MflI	RGATCY	1 cut(s)	784
MluCI	AATT	4 cut(s)	280, 463, 504, 870
MlyI	GAGTC	3 cut(s)	55, 149, 711
MmeI	TCCRAC	1 cut(s)	502
MseI	TTAA	2 cut(s)	9, 726
MspI	CCGG	1 cut(s)	150
MspR9I	CCNGG	1 cut(s)	16
MvaI	CCWGG	1 cut(s)	16
MvnI	CGCG	4 cut(s)	23, 25, 27, 32
MwoI	GCNNNNNNNGC	4 cut(s)	29, 76, 150, 381
NdeI	CATATG	1 cut(s)	333
NdeII	GATC	2 cut(s)	172, 784
NlaIII	CATG	3 cut(s)	88, 766, 803
NlaIV	GGNNCC	2 cut(s)	145, 258
NmeAIII	GCCGAG	1 cut(s)	223
NsbI	TGCGCA	1 cut(s)	191
PauI	GCGCGC	1 cut(s)	23
PcsI	WCGNNNNNNNCGW	2 cut(s)	50, 56
PfeI	GAWTC	5 cut(s)	123, 184, 205, 766, 850
PflFI	GACNNNGTC	1 cut(s)	49
PkrI	GCNGC	2 cut(s)	143, 655
PleI	GAGTC	3 cut(s)	55, 149, 711
PpsI	GAGTC	3 cut(s)	55, 149, 711
Psp6I	CCWGG	1 cut(s)	14
PspGI	CCWGG	1 cut(s)	14
PspN4I	GGNNCC	2 cut(s)	145, 258
PsuI	RGATCY	1 cut(s)	784
PsyI	GACNNNGTC	1 cut(s)	49
PteI	GCGCGC	1 cut(s)	23
RsaI	GTAC	2 cut(s)	394, 866
RsaNI	GTAC	2 cut(s)	393, 865
SaqAI	TTAA	2 cut(s)	9, 726
SatI	GCNGC	2 cut(s)	142, 654
Sau3AI	GATC	2 cut(s)	172, 784
SchI	GAGTC	3 cut(s)	55, 149, 711
ScrFI	CCNGG	1 cut(s)	16
SfaNI	GCATC	3 cut(s)	733, 763, 797
SfcI	CTRYAG	2 cut(s)	480, 597
Sse9I	AATT	4 cut(s)	280, 463, 504, 870
SsiI	CCGC	3 cut(s)	5, 32, 141
SspMI	CTAG	3 cut(s)	320, 417, 573
StyD4I	CCNGG	1 cut(s)	14
StyI	CCWWGG	2 cut(s)	162, 680
TaaI	ACNGT	4 cut(s)	349, 359, 601, 643
TaiI	ACGT	2 cut(s)	50, 592
TaqI	TCGA	2 cut(s)	59, 182
TasI	AATT	4 cut(s)	280, 463, 504, 870
TatI	WGTACW	1 cut(s)	864
TauI	GCSGC	1 cut(s)	144
TfiI	GAWTC	5 cut(s)	123, 184, 205, 766, 850
Tru1I	TTAA	2 cut(s)	9, 726
Tru9I	TTAA	2 cut(s)	9, 726
TscAI	CASTG	2 cut(s)	239, 364
TseI	GCWGC	1 cut(s)	653
TspDTI	ATGAA	3 cut(s)	531, 576, 779
TspGWI	ACGGA	2 cut(s)	121, 234
TspRI	CASTG	2 cut(s)	239, 364
Tth111I	GACNNNGTC	1 cut(s)	49
XapI	RAATTY	2 cut(s)	504, 870
XcmI	CCANNNNNNNNNTGG	1 cut(s)	331
XspI	CTAG	3 cut(s)	320, 417, 573
ZraI	GACGTC	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.