Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0010755

Physical Location & Seq

Genomic Coordinates Forward (+)

10049415 .. 10052211

Gene Structure 2797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1123600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGCTGTCAAGCCTCGGTATTCGCGCCTCCCGGCTCGCAAAACGTCGTCGTCGTCGTCCACGACGCTGGTCCTGACCTTGCTGGTCATGTTCACCTTCGTCATCCTCATTCTCCTCGCCCTCGGCATCCTCTCCGTCCCCAGCGGCTCCGCCGGCGGCTCCCCCAAAGCCAACGATCTCAGCTCGATCTCGCGGCAGAGCGTCGAGAGGAATGAGGAAAATGAGGCTGGGGAGCAGTGGGTCGAAGCCATCTCTTGGGAGCCAAGAGCTTTTGTGTATCACAATTTCTTGACCAAGGAGGAATGTGAATACCTAATCGATCTTGCCAAACCGACTATGCACAAGTCATCGGTAGTTGATAGTGAAACCGGAAAGAGCAGAGATAGCAGGGTTCGTACAAGCTCTGGAACATTTTTGGCAAGAGGGCGCGATAAAATTATCAGGAACATTGAGAAAAAAATCGCTAATTTCACCTTTTTACCTGTAGAACAGGGGGAGGGGCTTCAGGTTCTCCACTATGAAGTTGGACAGAAGTATGAACCTCACTTTGACTATTTTCAAGATGATTTTAACACCAAGAATGGAGGCCAACGTATAGCTACGGTTCTTATGTACCTCTCAGATGTTGAAGAAGGGGGTGAGACTGTGTTCCCTGCTGCCAAGGGGAATATTAGTTCTGTGCCTTGGTGGTATGAGCTATCTGAATGCGGTAAAAAAGGGCTTTCAGTTAAACCTAAGATGGGCGATGCACTGCTTTTCTGGAGCATGAGGCCTGACGCAAGTCTAGATCCTTCAAGTTTACATGGCGGATGCCCTGTGATTAAGGGGAATAAGTGGTCATCTACTAAATGGATCCGTGTCAGTTATACAAGTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004656 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006464 GO:0006520 GO:0006575 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0018401 GO:0019471 GO:0019511 GO:0019538 GO:0019752 GO:0019798 GO:0021700 GO:0022622 GO:0030154 GO:0031543 GO:0031545 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0051213 GO:0055114 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:0140096 GO:1901564 GO:1901605 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3

Protein Analysis

293

Amino Acids

32.49

Weight (kDa)

8.3

Isoelectric Point (pI)

51.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	166 - 286	3.7e-09	2OG-Fe(II) oxygenase superfamily
2OG-FeII_Oxy_3	PF13640	168 - 286	8e-20	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17720 AT4G35810 AT4G35810 AT5G66060 AT5G66060
fragaria_vesca	FvH4_1g11100
malus_domestica	MD02G1123600.v1.1 MD15G1237500.v1.1
prunus_persica	Prupe.7G174900_v2.0.a1
pyrus_communis	pycom02g09640
rosa_chinensis	RchiOBHm_Chr2g0098371
rosa_laevigata	RLG00000016795
rosa_multiflora	Rmu_sc0023758.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144030
rosa_rugosa	Rorug02G0072600 Rorug02G0072700
rosa_samantha	Rh2AG119700 Rh2BG122800 Rh2CG124400
rosa_wichuraiana	Rw2G009380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	255
AccII	CGCG	3 cut(s)	25, 193, 429
AciI	CCGC	6 cut(s)	144, 150, 156, 193, 708, 807
AclWI	GGATC	3 cut(s)	782, 847, 860
AcuI	CTGAAG	1 cut(s)	488
AfaI	GTAC	2 cut(s)	397, 614
AfiI	CCNNNNNNNGG	2 cut(s)	255, 740
AgsI	TTSAA	3 cut(s)	560, 629, 795
AloI	GAACNNNNNNTCC	2 cut(s)	658, 690
AluBI	AGCT	5 cut(s)	183, 269, 402, 599, 697
AluI	AGCT	5 cut(s)	183, 269, 402, 599, 697
Alw26I	GTCTC	1 cut(s)	635
AlwI	GGATC	3 cut(s)	782, 847, 860
AoxI	GGCC	2 cut(s)	586, 770
ApeKI	GCWGC	1 cut(s)	656
AspLEI	GCGC	2 cut(s)	27, 429
AspS9I	GGNCC	1 cut(s)	70
AsuC2I	CCSGG	1 cut(s)	32
AsuHPI	GGTGA	3 cut(s)	85, 463, 650
AvaII	GGWCC	1 cut(s)	70
BamHI	GGATCC	1 cut(s)	852
BbvI	GCAGC	1 cut(s)	643
BccI	CCATC	2 cut(s)	257, 733
BcnI	CCSGG	1 cut(s)	32
BcoDI	GTCTC	1 cut(s)	635
BfaI	CTAG	1 cut(s)	785
BfmI	CTRYAG	1 cut(s)	483
BisI	GCNGC	4 cut(s)	145, 157, 194, 657
BlsI	GCNGC	4 cut(s)	146, 158, 195, 658
Bme1390I	CCNGG	1 cut(s)	32
Bme18I	GGWCC	1 cut(s)	70
BmgT120I	GGNCC	1 cut(s)	70
BmiI	GGNNCC	4 cut(s)	148, 160, 261, 854
BmrFI	CCNGG	1 cut(s)	32
BmsI	GCATC	3 cut(s)	135, 736, 800
BoxI	GACNNNNGTC	2 cut(s)	68, 780
BpmI	CTGGAG	1 cut(s)	781
BpuMI	CCSGG	1 cut(s)	32
Bsa29I	ATCGAT	1 cut(s)	318
BsaJI	CCNNGG	5 cut(s)	14, 121, 294, 660, 683
BsaWI	WCCGGW	1 cut(s)	368
Bsc4I	CCNNNNNNNGG	2 cut(s)	255, 740
Bse118I	RCCGGY	1 cut(s)	152
BseCI	ATCGAT	1 cut(s)	318
BseDI	CCNNGG	5 cut(s)	14, 121, 294, 660, 683
BseGI	GGATG	3 cut(s)	102, 126, 815
BseLI	CCNNNNNNNGG	2 cut(s)	255, 740
BseMII	CTCAG	2 cut(s)	193, 633
BseRI	GAGGAG	1 cut(s)	104
BseXI	GCAGC	1 cut(s)	643
BseYI	CCCAGC	2 cut(s)	140, 227
Bsh1236I	CGCG	3 cut(s)	25, 193, 429
BshFI	GGCC	2 cut(s)	588, 772
BshVI	ATCGAT	1 cut(s)	318
BsiSI	CCGG	3 cut(s)	32, 153, 369
BslFI	GGGAC	1 cut(s)	122
BslI	CCNNNNNNNGG	2 cut(s)	255, 740
BsmAI	GTCTC	1 cut(s)	635
BsmFI	GGGAC	1 cut(s)	122
BsmI	GAATGC	1 cut(s)	710
BsnI	GGCC	2 cut(s)	588, 772
Bsp143I	GATC	5 cut(s)	175, 186, 319, 787, 852
BspACI	CCGC	6 cut(s)	144, 150, 156, 193, 708, 807
BspANI	GGCC	2 cut(s)	588, 772
BspCNI	CTCAG	2 cut(s)	192, 632
BspDI	ATCGAT	1 cut(s)	318
BspFNI	CGCG	3 cut(s)	25, 193, 429
BspLI	GGNNCC	4 cut(s)	148, 160, 261, 854
BspPI	GGATC	3 cut(s)	782, 847, 860
BsrFI	RCCGGY	1 cut(s)	152
BssAI	RCCGGY	1 cut(s)	152
BssECI	CCNNGG	5 cut(s)	14, 121, 294, 660, 683
BssMI	GATC	5 cut(s)	175, 186, 319, 787, 852
BssT1I	CCWWGG	3 cut(s)	294, 660, 683
Bst4CI	ACNGT	2 cut(s)	604, 646
BstC8I	GCNNGC	2 cut(s)	37, 154
BstDEI	CTNAG	4 cut(s)	179, 619, 735, 876
BstF5I	GGATG	3 cut(s)	102, 126, 815
BstFNI	CGCG	3 cut(s)	25, 193, 429
BstHHI	GCGC	2 cut(s)	27, 429
BstKTI	GATC	5 cut(s)	178, 189, 322, 790, 855
BstMAI	GTCTC	1 cut(s)	635
BstMBI	GATC	5 cut(s)	175, 186, 319, 787, 852
BstMWI	GCNNNNNNNGC	2 cut(s)	153, 384
BstPAI	GACNNNNGTC	2 cut(s)	68, 780
BstSCI	CCNGG	1 cut(s)	30
BstSFI	CTRYAG	1 cut(s)	483
BstUI	CGCG	3 cut(s)	25, 193, 429
BstV1I	GCAGC	1 cut(s)	643
BstX2I	RGATCY	2 cut(s)	787, 852
BstXI	CCANNNNNNTGG	1 cut(s)	67
BstYI	RGATCY	2 cut(s)	787, 852
Bsu15I	ATCGAT	1 cut(s)	318
BsuRI	GGCC	2 cut(s)	588, 772
BsuTUI	ATCGAT	1 cut(s)	318
BtgZI	GCGATG	1 cut(s)	759
BtsCI	GGATG	3 cut(s)	102, 126, 815
BtsI	GCAGTG	2 cut(s)	242, 749
BtsIMutI	CAGTG	2 cut(s)	242, 749
Cac8I	GCNNGC	2 cut(s)	37, 154
CfoI	GCGC	2 cut(s)	27, 429
Cfr10I	RCCGGY	1 cut(s)	152
Cfr13I	GGNCC	1 cut(s)	70
ClaI	ATCGAT	1 cut(s)	318
CseI	GACGC	3 cut(s)	73, 190, 785
Csp6I	GTAC	2 cut(s)	396, 613
CviAII	CATG	3 cut(s)	88, 766, 803
CviQI	GTAC	2 cut(s)	396, 613
DdeI	CTNAG	4 cut(s)	179, 619, 735, 876
DpnI	GATC	5 cut(s)	177, 188, 321, 789, 854
DpnII	GATC	5 cut(s)	175, 186, 319, 787, 852
EciI	GGCGGA	2 cut(s)	139, 822
Eco130I	CCWWGG	3 cut(s)	294, 660, 683
Eco147I	AGGCCT	1 cut(s)	772
Eco47I	GGWCC	1 cut(s)	70
Eco57I	CTGAAG	1 cut(s)	488
EcoT14I	CCWWGG	3 cut(s)	294, 660, 683
ErhI	CCWWGG	3 cut(s)	294, 660, 683
FaeI	CATG	3 cut(s)	91, 769, 806
FaqI	GGGAC	1 cut(s)	122
FatI	CATG	3 cut(s)	87, 765, 802
Fnu4HI	GCNGC	4 cut(s)	145, 157, 194, 657
FokI	GGATG	3 cut(s)	89, 113, 822
Fsp4HI	GCNGC	4 cut(s)	145, 157, 194, 657
FspBI	CTAG	1 cut(s)	785
GlaI	GCGC	2 cut(s)	26, 428
GluI	GCNGC	4 cut(s)	145, 157, 194, 657
GsaI	CCCAGC	2 cut(s)	144, 231
GsuI	CTGGAG	1 cut(s)	781
HaeIII	GGCC	2 cut(s)	588, 772
HapII	CCGG	3 cut(s)	32, 153, 369
HgaI	GACGC	3 cut(s)	73, 190, 785
HhaI	GCGC	2 cut(s)	27, 429
Hin1II	CATG	3 cut(s)	91, 769, 806
Hin6I	GCGC	2 cut(s)	25, 427
HinP1I	GCGC	2 cut(s)	25, 427
HpaII	CCGG	3 cut(s)	32, 153, 369
HphI	GGTGA	3 cut(s)	85, 463, 650
Hpy166II	GTNNAC	3 cut(s)	60, 93, 800
Hpy188I	TCNGA	2 cut(s)	622, 703
Hpy188III	TCNNGA	8 cut(s)	73, 205, 289, 405, 442, 560, 760, 785
Hpy8I	GTNNAC	3 cut(s)	60, 93, 800
Hpy99I	CGWCG	6 cut(s)	49, 52, 55, 58, 67, 206
HpyAV	CCTTC	3 cut(s)	106, 626, 801
HpyCH4III	ACNGT	2 cut(s)	604, 646
HpyCH4IV	ACGT	2 cut(s)	44, 592
HpyCH4V	TGCA	2 cut(s)	340, 749
HpyF10VI	GCNNNNNNNGC	2 cut(s)	153, 384
HpyF3I	CTNAG	4 cut(s)	179, 619, 735, 876
HpySE526I	ACGT	2 cut(s)	44, 592
Hsp92II	CATG	3 cut(s)	91, 769, 806
HspAI	GCGC	2 cut(s)	25, 427
KroI	GCCGGC	1 cut(s)	152
KroNI	GCCGGC	1 cut(s)	154
Kzo9I	GATC	5 cut(s)	175, 186, 319, 787, 852
LmnI	GCTCC	5 cut(s)	152, 164, 232, 259, 762
Lsp1109I	GCAGC	1 cut(s)	643
LweI	GCATC	3 cut(s)	135, 736, 800
MaeI	CTAG	1 cut(s)	785
MaeII	ACGT	2 cut(s)	44, 592
MalI	GATC	5 cut(s)	177, 188, 321, 789, 854
MboI	GATC	5 cut(s)	175, 186, 319, 787, 852
MboII	GAAGA	1 cut(s)	641
MflI	RGATCY	2 cut(s)	787, 852
MluCI	AATT	3 cut(s)	283, 435, 466
MmeI	TCCRAC	1 cut(s)	505
MreI	CGCCGGCG	1 cut(s)	152
MroNI	GCCGGC	1 cut(s)	152
MseI	TTAA	3 cut(s)	570, 729, 822
MspA1I	CMGCKG	1 cut(s)	144
MspI	CCGG	3 cut(s)	32, 153, 369
MspR9I	CCNGG	1 cut(s)	32
Mva1269I	GAATGC	1 cut(s)	710
MvnI	CGCG	3 cut(s)	25, 193, 429
MwoI	GCNNNNNNNGC	2 cut(s)	153, 384
NaeI	GCCGGC	1 cut(s)	154
NciI	CCSGG	1 cut(s)	32
NdeII	GATC	5 cut(s)	175, 186, 319, 787, 852
NgoMIV	GCCGGC	1 cut(s)	152
NlaIII	CATG	3 cut(s)	91, 769, 806
NlaIV	GGNNCC	4 cut(s)	148, 160, 261, 854
NmeAIII	GCCGAG	1 cut(s)	102
PceI	AGGCCT	1 cut(s)	772
PcsI	WCGNNNNNNNCGW	3 cut(s)	50, 53, 59
PctI	GAATGC	1 cut(s)	710
PdiI	GCCGGC	1 cut(s)	154
PflMI	CCANNNNNTGG	1 cut(s)	255
PkrI	GCNGC	4 cut(s)	146, 158, 195, 658
PshAI	GACNNNNGTC	2 cut(s)	68, 780
PspFI	CCCAGC	2 cut(s)	140, 227
PspN4I	GGNNCC	4 cut(s)	148, 160, 261, 854
PspPI	GGNCC	1 cut(s)	70
PsuI	RGATCY	2 cut(s)	787, 852
RsaI	GTAC	2 cut(s)	397, 614
RsaNI	GTAC	2 cut(s)	396, 613
SaqAI	TTAA	3 cut(s)	570, 729, 822
SatI	GCNGC	4 cut(s)	145, 157, 194, 657
Sau3AI	GATC	5 cut(s)	175, 186, 319, 787, 852
Sau96I	GGNCC	1 cut(s)	70
ScrFI	CCNGG	1 cut(s)	32
SfaNI	GCATC	3 cut(s)	135, 736, 800
SfcI	CTRYAG	1 cut(s)	483
SgrAI	CRCCGGYG	1 cut(s)	152
SinI	GGWCC	1 cut(s)	70
Sse9I	AATT	3 cut(s)	283, 435, 466
SseBI	AGGCCT	1 cut(s)	772
SsiI	CCGC	6 cut(s)	144, 150, 156, 193, 708, 807
SspI	AATATT	1 cut(s)	670
SspMI	CTAG	1 cut(s)	785
StuI	AGGCCT	1 cut(s)	772
StyD4I	CCNGG	1 cut(s)	30
StyI	CCWWGG	3 cut(s)	294, 660, 683
TaaI	ACNGT	2 cut(s)	604, 646
TaiI	ACGT	2 cut(s)	47, 595
TaqI	TCGA	4 cut(s)	185, 204, 243, 318
TasI	AATT	3 cut(s)	283, 435, 466
TauI	GCSGC	3 cut(s)	147, 159, 196
Tru1I	TTAA	3 cut(s)	570, 729, 822
Tru9I	TTAA	3 cut(s)	570, 729, 822
TscAI	CASTG	2 cut(s)	242, 756
TseI	GCWGC	1 cut(s)	656
TspDTI	ATGAA	2 cut(s)	534, 552
TspGWI	ACGGA	2 cut(s)	124, 845
TspRI	CASTG	2 cut(s)	242, 756
Van91I	CCANNNNNTGG	1 cut(s)	255
VpaK11BI	GGWCC	1 cut(s)	70
XbaI	TCTAGA	1 cut(s)	784
XcmI	CCANNNNNNNNNTGG	1 cut(s)	521
XspI	CTAG	1 cut(s)	785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.