AT2G17787

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0006081
Physical Location & Seq
Forward (+)
7731075 .. 7733137
2063 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G17787.1

Sequence Viewer

Length: 975 bp
ATGTCTCGGTGTTATCCGTTTCCACCACCTGGTTATGTTTGGAAAGAAAGTCTGATCGAATCGATCAAGGGGGCAAAGGAGGAAGTGAAGAAAGATAGAAAACACAAGAGGAATGAAAAAGATAGAAAGGATAGGGATAATGAGGCGGGGAGGAGCAGGAAGCATCGGCATAAGAGACGGCGGAAAGATGAAGGCGCCATTGCTAGTGGCAAATTAGTAAGCAGTGAGGTCGAGTTGTTAGAGAAGAGCTGCCAGACTGTGGAACTTGAGCTTCAAACATCGTCTCAGAATTCTTGTGATAGCACTCTTCATAGCAATGAGAGACCAAAGCAAATTCAGAGTCAGCCCCTTGATGAAACCAGCATACGGACTCGGTTACCTGACAAAGGGCAGGAAGATCCTGAGGATGGGGTGATGATGACCAGCAAGGATCAAAAACAGCGCTTTTCCCGGGAAATGTTAGATGCTTCTCAAGCTGCTACTGCTCCTAATGAGTCTGTTGGTCATTCAAGGGTCTGTCAAGAGAAAAGAATAGATCCAACTTTTGGTTCGTCGAGAGAGATCACAACAAAACTCAACAAAGAGAAGAAGTCAGTTCCTTCGAAAGATAACAGAAAAGTTAGTAAAGAGAAGAAGATGCCATCATTATCTTCATGTAACCCTCTGGAACAAGAGAAACCGACCTCTAGTCATCAAGAAACCCCTGGACCTTCCAAGCTATTATGCAGGAAATGCCCTCCTTCCATGGCTGGGCAACTCTTGAATCTTATCGAGAACTGGGCTCCTGATCGGGTTGAGAGCAAGCTCACTGACTCTGAAGATCAAGAATGGTGGTTGTTCATCAAGTTTGGAGCCAAAAGTCCACAAGTTAGCAATCAGAAAACCAACCAGGGAAGTAGTTCCATGGTGTGGCCGACTGCTAGATTTCTTCCTGAAGCCGAAGTACACGCATTGCCATTCACTGTCCCGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

324

Amino Acids

36.84

Weight (kDa)

9.17

Isoelectric Point (pI)

63.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 194
AccB7I CCANNNNNTGG 4 cut(s) 29, 259, 545, 909
AciI CCGC 2 cut(s) 146, 181
AclWI GGATC 3 cut(s) 392, 438, 530
AcoI YGGCCR 1 cut(s) 911
AcsI RAATTY 2 cut(s) 289, 333
AcuI CTGAAG 2 cut(s) 837, 954
AcyI GRCGYC 1 cut(s) 195
AfaI GTAC 1 cut(s) 945
AfeI AGCGCT 1 cut(s) 443
AfiI CCNNNNNNNGG 8 cut(s) 29, 259, 366, 386, 407, 545, 750, 909
AgsI TTSAA 3 cut(s) 275, 510, 763
AhdI GACNNNNNGTC 1 cut(s) 687
AjnI CCWGG 3 cut(s) 28, 703, 888
AjuI GAANNNNNNNTTGG 2 cut(s) 532, 564
AluBI AGCT 5 cut(s) 249, 271, 476, 718, 805
AluI AGCT 5 cut(s) 249, 271, 476, 718, 805
Alw26I GTCTC 4 cut(s) 9, 169, 288, 316
AlwI GGATC 3 cut(s) 392, 438, 530
Ama87I CYCGRG 1 cut(s) 450
Aor51HI AGCGCT 1 cut(s) 443
AoxI GGCC 1 cut(s) 911
ApeKI GCWGC 2 cut(s) 249, 476
ApoI RAATTY 2 cut(s) 289, 333
ArsI GACNNNNNNTTYG 2 cut(s) 325, 357
Asp700I GAANNNNTTC 1 cut(s) 898
AspLEI GCGC 2 cut(s) 197, 444
AspS9I GGNCC 1 cut(s) 707
AsuC2I CCSGG 2 cut(s) 451, 452
AsuHPI GGTGA 1 cut(s) 424
AsuII TTCGAA 1 cut(s) 602
AvaI CYCGRG 1 cut(s) 450
AvaII GGWCC 1 cut(s) 707
AxyI CCTNAGG 1 cut(s) 402
BanI GGYRCC 1 cut(s) 194
BanII GRGCYC 1 cut(s) 784
BarI GAAGNNNNNNTAC 2 cut(s) 927, 959
BbvI GCAGC 2 cut(s) 236, 463
BccI CCATC 2 cut(s) 401, 649
BceAI ACGGC 1 cut(s) 194
BcgI CGANNNNNNTGC 2 cut(s) 211, 245
BciT130I CCWGG 3 cut(s) 30, 705, 890
BcnI CCSGG 2 cut(s) 451, 452
BcoDI GTCTC 4 cut(s) 9, 169, 288, 316
BfaI CTAG 3 cut(s) 204, 687, 921
BfoI RGCGCY 2 cut(s) 198, 445
BisI GCNGC 2 cut(s) 250, 477
BlsI GCNGC 2 cut(s) 251, 478
Bme1390I CCNGG 5 cut(s) 30, 451, 452, 705, 890
Bme18I GGWCC 1 cut(s) 707
BmeRI GACNNNNNGTC 1 cut(s) 687
BmeT110I CYCGRG 1 cut(s) 450
BmgT120I GGNCC 1 cut(s) 707
BmiI GGNNCC 3 cut(s) 196, 783, 853
BmrFI CCNGG 5 cut(s) 30, 451, 452, 705, 890
BmrI ACTGGG 1 cut(s) 787
BmsI GCATC 3 cut(s) 172, 454, 627
BmuI ACTGGG 1 cut(s) 787
Bpu14I TTCGAA 1 cut(s) 602
BpuEI CTTGAG 2 cut(s) 287, 456
BpuMI CCSGG 2 cut(s) 451, 452
Bsa29I ATCGAT 1 cut(s) 62
BsaHI GRCGYC 1 cut(s) 195
BsaI GGTCTC 1 cut(s) 316
BsaJI CCNNGG 5 cut(s) 450, 703, 744, 889, 903
Bsc4I CCNNNNNNNGG 8 cut(s) 29, 259, 366, 386, 407, 545, 750, 909
Bse1I ACTGG 1 cut(s) 782
Bse21I CCTNAGG 1 cut(s) 402
Bse3DI GCAATG 3 cut(s) 198, 322, 950
BseBI CCWGG 3 cut(s) 30, 705, 890
BseCI ATCGAT 1 cut(s) 62
BseDI CCNNGG 5 cut(s) 450, 703, 744, 889, 903
BseGI GGATG 1 cut(s) 412
BseLI CCNNNNNNNGG 8 cut(s) 29, 259, 366, 386, 407, 545, 750, 909
BseMI GCAATG 3 cut(s) 198, 322, 950
BseMII CTCAG 2 cut(s) 299, 393
BseNI ACTGG 1 cut(s) 782
BseRI GAGGAG 1 cut(s) 166
BseXI GCAGC 2 cut(s) 236, 463
BseYI CCCAGC 1 cut(s) 749
BshFI GGCC 1 cut(s) 913
BshNI GGYRCC 1 cut(s) 194
BshVI ATCGAT 1 cut(s) 62
BsiHKCI CYCGRG 1 cut(s) 450
BsiSI CCGG 1 cut(s) 451
BslFI GGGAC 1 cut(s) 950
BslI CCNNNNNNNGG 8 cut(s) 29, 259, 366, 386, 407, 545, 750, 909
BsmAI GTCTC 4 cut(s) 9, 169, 288, 316
BsmBI CGTCTC 2 cut(s) 169, 288
BsmFI GGGAC 1 cut(s) 950
BsnI GGCC 1 cut(s) 913
Bso31I GGTCTC 1 cut(s) 316
BsoBI CYCGRG 1 cut(s) 450
Bsp119I TTCGAA 1 cut(s) 602
Bsp1286I GDGCHC 1 cut(s) 784
Bsp143I GATC 8 cut(s) 54, 63, 397, 430, 535, 561, 787, 820
Bsp19I CCATGG 2 cut(s) 744, 903
BspACI CCGC 2 cut(s) 146, 181
BspANI GGCC 1 cut(s) 913
BspCNI CTCAG 2 cut(s) 298, 394
BspDI ATCGAT 1 cut(s) 62
BspLI GGNNCC 3 cut(s) 196, 783, 853
BspPI GGATC 3 cut(s) 392, 438, 530
BspQI GCTCTTC 1 cut(s) 239
BspT104I TTCGAA 1 cut(s) 602
BspT107I GGYRCC 1 cut(s) 194
BspTNI GGTCTC 1 cut(s) 316
BsrDI GCAATG 3 cut(s) 198, 322, 950
BsrI ACTGG 1 cut(s) 782
BssECI CCNNGG 5 cut(s) 450, 703, 744, 889, 903
BssMI GATC 8 cut(s) 54, 63, 397, 430, 535, 561, 787, 820
BssNI GRCGYC 1 cut(s) 195
BssT1I CCWWGG 2 cut(s) 744, 903
Bst2UI CCWGG 3 cut(s) 30, 705, 890
Bst4CI ACNGT 2 cut(s) 259, 964
Bst6I CTCTTC 2 cut(s) 239, 312
BstACI GRCGYC 1 cut(s) 195
BstAPI GCANNNNNTGC 1 cut(s) 732
BstBI TTCGAA 1 cut(s) 602
BstC8I GCNNGC 1 cut(s) 803
BstDEI CTNAG 2 cut(s) 285, 402
BstDSI CCRYGG 2 cut(s) 744, 903
BstEII GGTNACC 1 cut(s) 375
BstENI CCTNNNNNAGG 1 cut(s) 384
BstF5I GGATG 1 cut(s) 412
BstH2I RGCGCY 2 cut(s) 198, 445
BstHHI GCGC 2 cut(s) 197, 444
BstKTI GATC 8 cut(s) 57, 66, 400, 433, 538, 564, 790, 823
BstMAI GTCTC 4 cut(s) 9, 169, 288, 316
BstMBI GATC 8 cut(s) 54, 63, 397, 430, 535, 561, 787, 820
BstMWI GCNNNNNNNGC 3 cut(s) 473, 482, 732
BstNI CCWGG 3 cut(s) 30, 705, 890
BstPI GGTNACC 1 cut(s) 375
BstSCI CCNGG 5 cut(s) 28, 449, 450, 703, 888
BstV1I GCAGC 2 cut(s) 236, 463
BstX2I RGATCY 2 cut(s) 397, 535
BstYI RGATCY 2 cut(s) 397, 535
Bsu15I ATCGAT 1 cut(s) 62
Bsu36I CCTNAGG 1 cut(s) 402
BsuRI GGCC 1 cut(s) 913
BsuTUI ATCGAT 1 cut(s) 62
BtgI CCRYGG 2 cut(s) 744, 903
BtsCI GGATG 1 cut(s) 412
BtsI GCAGTG 1 cut(s) 229
BtsIMutI CAGTG 3 cut(s) 229, 807, 960
Cac8I GCNNGC 1 cut(s) 803
CfoI GCGC 2 cut(s) 197, 444
Cfr13I GGNCC 1 cut(s) 707
Cfr9I CCCGGG 1 cut(s) 450
ClaI ATCGAT 1 cut(s) 62
CsiI ACCWGGT 1 cut(s) 28
Csp6I GTAC 1 cut(s) 944
CspCI CAANNNNNGTGG 2 cut(s) 812, 847
CviAII CATG 3 cut(s) 654, 745, 904
CviQI GTAC 1 cut(s) 944
DdeI CTNAG 2 cut(s) 285, 402
DinI GGCGCC 1 cut(s) 196
DpnI GATC 8 cut(s) 56, 65, 399, 432, 537, 563, 789, 822
DpnII GATC 8 cut(s) 54, 63, 397, 430, 535, 561, 787, 820
DriI GACNNNNNGTC 1 cut(s) 687
EaeI YGGCCR 1 cut(s) 911
Eam1104I CTCTTC 2 cut(s) 239, 312
Eam1105I GACNNNNNGTC 1 cut(s) 687
EarI CTCTTC 2 cut(s) 239, 312
EciI GGCGGA 1 cut(s) 196
Eco130I CCWWGG 2 cut(s) 744, 903
Eco24I GRGCYC 1 cut(s) 784
Eco31I GGTCTC 1 cut(s) 316
Eco47I GGWCC 1 cut(s) 707
Eco47III AGCGCT 1 cut(s) 443
Eco57I CTGAAG 2 cut(s) 837, 954
Eco81I CCTNAGG 1 cut(s) 402
Eco88I CYCGRG 1 cut(s) 450
Eco91I GGTNACC 1 cut(s) 375
EcoNI CCTNNNNNAGG 1 cut(s) 384
EcoO65I GGTNACC 1 cut(s) 375
EcoRI GAATTC 1 cut(s) 289
EcoRII CCWGG 3 cut(s) 28, 703, 888
EcoT14I CCWWGG 2 cut(s) 744, 903
EcoT38I GRGCYC 1 cut(s) 784
EgeI GGCGCC 1 cut(s) 196
EheI GGCGCC 1 cut(s) 196
ErhI CCWWGG 2 cut(s) 744, 903
Esp3I CGTCTC 2 cut(s) 169, 288
FaeI CATG 3 cut(s) 657, 748, 907
FaiI YATR 8 cut(s) 36, 171, 312, 365, 655, 724, 746, 905
FaqI GGGAC 1 cut(s) 950
FatI CATG 3 cut(s) 653, 744, 903
FauI CCCGC 1 cut(s) 139
Fnu4HI GCNGC 2 cut(s) 250, 477
FokI GGATG 1 cut(s) 419
FriOI GRGCYC 1 cut(s) 784
Fsp4HI GCNGC 2 cut(s) 250, 477
FspBI CTAG 3 cut(s) 204, 687, 921
GlaI GCGC 2 cut(s) 196, 443
GluI GCNGC 2 cut(s) 250, 477
GsaI CCCAGC 1 cut(s) 753
HaeII RGCGCY 2 cut(s) 198, 445
HaeIII GGCC 1 cut(s) 913
HapII CCGG 1 cut(s) 451
HhaI GCGC 2 cut(s) 197, 444
Hin1I GRCGYC 1 cut(s) 195
Hin1II CATG 3 cut(s) 657, 748, 907
Hin6I GCGC 2 cut(s) 195, 442
HinP1I GCGC 2 cut(s) 195, 442
HinfI GANTC 6 cut(s) 59, 340, 370, 494, 763, 812
HpaII CCGG 1 cut(s) 451
HphI GGTGA 1 cut(s) 424
Hpy166II GTNNAC 2 cut(s) 863, 946
Hpy188I TCNGA 6 cut(s) 54, 288, 339, 817, 879, 974
Hpy8I GTNNAC 2 cut(s) 863, 946
Hpy99I CGWCG 1 cut(s) 556
HpyAV CCTTC 4 cut(s) 185, 609, 720, 750
HpyCH4III ACNGT 2 cut(s) 259, 964
HpyCH4V TGCA 1 cut(s) 726
HpyF10VI GCNNNNNNNGC 3 cut(s) 473, 482, 732
HpyF3I CTNAG 2 cut(s) 285, 402
Hsp92I GRCGYC 1 cut(s) 195
Hsp92II CATG 3 cut(s) 657, 748, 907
HspAI GCGC 2 cut(s) 195, 442
KasI GGCGCC 1 cut(s) 194
Kzo9I GATC 8 cut(s) 54, 63, 397, 430, 535, 561, 787, 820
LguI GCTCTTC 1 cut(s) 239
LmnI GCTCC 4 cut(s) 153, 490, 787, 851
Lsp1109I GCAGC 2 cut(s) 236, 463
LweI GCATC 3 cut(s) 172, 454, 627
MabI ACCWGGT 1 cut(s) 28
MaeI CTAG 3 cut(s) 204, 687, 921
MaeIII GTNAC 2 cut(s) 375, 656
MalI GATC 8 cut(s) 56, 65, 399, 432, 537, 563, 789, 822
MboI GATC 8 cut(s) 54, 63, 397, 430, 535, 561, 787, 820
MflI RGATCY 2 cut(s) 397, 535
MhlI GDGCHC 1 cut(s) 784
MluCI AATT 3 cut(s) 212, 289, 333
Mly113I GGCGCC 1 cut(s) 195
MlyI GAGTC 4 cut(s) 349, 364, 503, 806
MmeI TCCRAC 1 cut(s) 563
MnlI CCTC 9 cut(s) 73, 102, 136, 144, 220, 397, 672, 694, 747
MroXI GAANNNNTTC 1 cut(s) 898
MslI CAYNNNNRTG 1 cut(s) 315
MspI CCGG 1 cut(s) 451
MspR9I CCNGG 5 cut(s) 30, 451, 452, 705, 890
MvaI CCWGG 3 cut(s) 30, 705, 890
MwoI GCNNNNNNNGC 3 cut(s) 473, 482, 732
NarI GGCGCC 1 cut(s) 195
NciI CCSGG 2 cut(s) 451, 452
NcoI CCATGG 2 cut(s) 744, 903
NdeII GATC 8 cut(s) 54, 63, 397, 430, 535, 561, 787, 820
NlaIII CATG 3 cut(s) 657, 748, 907
NlaIV GGNNCC 3 cut(s) 196, 783, 853
NspV TTCGAA 1 cut(s) 602
PciSI GCTCTTC 1 cut(s) 239
PdmI GAANNNNTTC 1 cut(s) 898
PfeI GAWTC 2 cut(s) 59, 763
PflMI CCANNNNNTGG 4 cut(s) 29, 259, 545, 909
PkrI GCNGC 2 cut(s) 251, 478
PleI GAGTC 4 cut(s) 348, 364, 502, 806
PluTI GGCGCC 1 cut(s) 198
PpsI GAGTC 4 cut(s) 348, 364, 502, 806
Psp6I CCWGG 3 cut(s) 28, 703, 888
PspEI GGTNACC 1 cut(s) 375
PspFI CCCAGC 1 cut(s) 749
PspGI CCWGG 3 cut(s) 28, 703, 888
PspN4I GGNNCC 3 cut(s) 196, 783, 853
PspPI GGNCC 1 cut(s) 707
PsuI RGATCY 2 cut(s) 397, 535
RsaI GTAC 1 cut(s) 945
RsaNI GTAC 1 cut(s) 944
RseI CAYNNNNRTG 1 cut(s) 315
SapI GCTCTTC 1 cut(s) 239
SatI GCNGC 2 cut(s) 250, 477
Sau3AI GATC 8 cut(s) 54, 63, 397, 430, 535, 561, 787, 820
Sau96I GGNCC 1 cut(s) 707
SchI GAGTC 4 cut(s) 349, 364, 503, 806
ScrFI CCNGG 5 cut(s) 30, 451, 452, 705, 890
SduI GDGCHC 1 cut(s) 784
SexAI ACCWGGT 1 cut(s) 28
SfaNI GCATC 3 cut(s) 172, 454, 627
SfoI GGCGCC 1 cut(s) 196
SfuI TTCGAA 1 cut(s) 602
SinI GGWCC 1 cut(s) 707
SmaI CCCGGG 1 cut(s) 452
SmiMI CAYNNNNRTG 1 cut(s) 315
SmlI CTYRAG 2 cut(s) 266, 471
SmoI CTYRAG 2 cut(s) 266, 471
Sse9I AATT 3 cut(s) 212, 289, 333
SsiI CCGC 2 cut(s) 146, 181
SspDI GGCGCC 1 cut(s) 194
SspMI CTAG 3 cut(s) 204, 687, 921
StyD4I CCNGG 5 cut(s) 28, 449, 450, 703, 888
StyI CCWWGG 2 cut(s) 744, 903
TaaI ACNGT 2 cut(s) 259, 964
TaqI TCGA 6 cut(s) 57, 62, 231, 554, 602, 771
TasI AATT 3 cut(s) 212, 289, 333
TatI WGTACW 1 cut(s) 943
TfiI GAWTC 2 cut(s) 59, 763
TscAI CASTG 3 cut(s) 229, 814, 967
TseI GCWGC 2 cut(s) 249, 476
TspDTI ATGAA 6 cut(s) 129, 204, 299, 369, 642, 829
TspGWI ACGGA 2 cut(s) 6, 382
TspMI CCCGGG 1 cut(s) 450
TspRI CASTG 3 cut(s) 229, 814, 967
Van91I CCANNNNNTGG 4 cut(s) 29, 259, 545, 909
VpaK11BI GGWCC 1 cut(s) 707
XagI CCTNNNNNAGG 1 cut(s) 384
XapI RAATTY 2 cut(s) 289, 333
XmaI CCCGGG 1 cut(s) 450
XmnI GAANNNNTTC 1 cut(s) 898
XspI CTAG 3 cut(s) 204, 687, 921
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.