Rroxscaffold_2G00143540

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
81527797 .. 81531379
3583 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00143540.1

Sequence Viewer

Length: 1512 bp
ATGTCTCGGTGTTTTCCTTACCCTCCTCCCGGGTATGTGAAGAAGGAGATCTGCGATGAGGCTTTGATCGAACCGATTAAGCTCCAAGGAGAAGCTGAGAAGGCCAAGAAAGAAAAGAAGAGAGAGAAAAAACGAGAGAAGAAAGAAAAGAAGGCTAGAGAAAATGGGGAGGTTGAAGACAAGAAGCACCATCACAAAAAAGGGAACAAAGATGAAAGGCAGCAAGAAGATGAGAAAGTCAGGGAACATTGCAAGAAGAGAGAACATGAAGAGGCTGAAATTCTGGACATGAGTACCCTAACGGAAGAGCATCCAGTTGGTTCCCAGAATTCTTCTGACAGTACCCTTAATAGCAATAGCAGCAACAAAAGGCAGAAGCAGAACTTGTCTCCTGAGTGCAGGCAAAATACCGGGAGCATTCTTCGTATCCGGTTGCCTCTCCAAAGGCACAAAGATCAAGAAGTGCTACCGAGAGAGGAATTCCCTTCCCGGTTGCCTCCCCACAGGAACAATGCTCCAGAGGAACAGCCTTTTCGGTTGCCTCTCCAAAGGACCAATGCTCCAGAAGTTTCTCCCAGAGAGAAACTGCCTAGCCGGTTGCCTCTTCAAAGAAACAAAGATTCAGCATTGTTACCCAAAGATGAACAGCCTTGCAGGTTGCCTCTACAAAGGAACAAACATCTGGAAGTGTTGCCCAAAGAGGAACAACCCTGCAGGTTGCCTCTACAAAGGAACAAACATCTGGAAGTATTGCCCAAAGAGGAACAACCCTGCAGGTTGCCTCTTAAGACACAGAAAGAACCACCAGTGCTAACTCGAGAGAAACAGCCTTCTCTTAAAAGGCAAAAGGATCAAGATGTTCTACCCAAAGAGAAGAAGACTTGCCTGGTGTCTCTCCAAAGGACCAAGGATTCAGAAGTATTACCCAGGGAGAAACAACAGCCTAGCCAGCTGCCTCTCCAAACGAACAAAGATCGAAAAATAGTACCCAGGGAGAAACAGCTTAGCCAGTTGCCTCTCCAAAGGAACAAGGATCCAGCAGTGTTATCTAGAGAGGAACAGCCCAGCCAGTTGCTTCTCCAAAAGCAGAAAGTTCCACAAGTGCTGCTCAGAGAAGAACAGCTGTGTTCTGTATCTGGAAGGACGGCTGATGCCTCTGTTCAAGGTAGGTGTGAACCTGCTCCTGTACTTGGAAGGGATGAGGGAGAAAAACCCTGTTCTACTTCTAGAATTGAGGGCAAAGAAGACCGAAAAAGCAAGCGAAGAGCATCACAATACAAAGAGCTATTTGAGAAATGGGTTGAGCCTCCTCTTTTGTCAAGTTTACCACCCACAGATATTGATGATGATCAGGGATGGTTGCTTAAGACGAATAAGAACCCAATCTGTGGGGTTGAGAAATGTGTTGCTGCAAGTGACAGGTTGAGCTGTGGAGAGTCGGTGTCTTGGCCACGTGCTCGCCTCTTGCCTGAGGTTGATATGTATGCTTTGCCATATACCGTACCATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

503

Amino Acids

58.25

Weight (kDa)

9.27

Isoelectric Point (pI)

75.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 4 cut(s) 645, 705, 765, 1186
AccB7I CCANNNNNTGG 1 cut(s) 1388
AclWI GGATC 3 cut(s) 858, 1028, 1041
AcoI YGGCCR 1 cut(s) 1448
AcsI RAATTY 3 cut(s) 279, 328, 479
AcvI CACGTG 1 cut(s) 1454
AfaI GTAC 5 cut(s) 295, 343, 987, 1188, 1503
AfiI CCNNNNNNNGG 3 cut(s) 29, 1190, 1388
AflII CTTAAG 2 cut(s) 785, 1364
AgsI TTSAA 3 cut(s) 176, 608, 1163
AjnI CCWGG 3 cut(s) 885, 926, 989
AluBI AGCT 7 cut(s) 82, 95, 952, 1003, 1123, 1285, 1428
AluI AGCT 7 cut(s) 82, 95, 952, 1003, 1123, 1285, 1428
Alw21I GWGCWC 1 cut(s) 1459
Alw26I GTCTC 3 cut(s) 9, 393, 897
AlwI GGATC 3 cut(s) 858, 1028, 1041
Ama87I CYCGRG 2 cut(s) 29, 816
AoxI GGCC 2 cut(s) 102, 1448
ApeKI GCWGC 5 cut(s) 220, 360, 952, 1105, 1409
ApoI RAATTY 3 cut(s) 279, 328, 479
AspS9I GGNCC 2 cut(s) 552, 903
AsuC2I CCSGG 4 cut(s) 30, 31, 412, 490
AvaI CYCGRG 2 cut(s) 29, 816
AvaII GGWCC 2 cut(s) 552, 903
AxyI CCTNAGG 1 cut(s) 1470
BaeI ACNNNNGTAYC 2 cut(s) 277, 310
BalI TGGCCA 1 cut(s) 1450
BamHI GGATCC 1 cut(s) 1033
BbrPI CACGTG 1 cut(s) 1454
BbsI GAAGAC 3 cut(s) 183, 884, 1251
Bbv12I GWGCWC 1 cut(s) 1459
BbvI GCAGC 5 cut(s) 232, 372, 939, 1092, 1396
BccI CCATC 2 cut(s) 198, 1350
BceAI ACGGC 1 cut(s) 1161
BciT130I CCWGG 3 cut(s) 887, 928, 991
BciVI GTATCC 1 cut(s) 437
BclI TGATCA 1 cut(s) 1348
BcnI CCSGG 4 cut(s) 30, 31, 412, 490
BcoDI GTCTC 3 cut(s) 9, 393, 897
BfaI CTAG 5 cut(s) 156, 591, 945, 1050, 1227
BfmI CTRYAG 2 cut(s) 712, 772
BfrI CTTAAG 2 cut(s) 785, 1364
BfuAI ACCTGC 4 cut(s) 645, 705, 765, 1186
BfuI GTATCC 1 cut(s) 437
BglII AGATCT 1 cut(s) 48
BisI GCNGC 5 cut(s) 221, 361, 953, 1106, 1410
BlpI GCTNAGC 1 cut(s) 1004
BlsI GCNGC 5 cut(s) 222, 362, 954, 1107, 1411
Bme1390I CCNGG 7 cut(s) 30, 31, 412, 490, 887, 928, 991
Bme18I GGWCC 2 cut(s) 552, 903
BmeT110I CYCGRG 2 cut(s) 29, 816
BmgT120I GGNCC 2 cut(s) 552, 903
BmiI GGNNCC 2 cut(s) 322, 1035
BmrFI CCNGG 7 cut(s) 30, 31, 412, 490, 887, 928, 991
BmsI GCATC 3 cut(s) 319, 1141, 1277
BpiI GAAGAC 3 cut(s) 183, 884, 1251
BpmI CTGGAG 2 cut(s) 501, 546
Bpu1102I GCTNAGC 1 cut(s) 1004
BpuMI CCSGG 4 cut(s) 30, 31, 412, 490
BsaAI YACGTR 1 cut(s) 1454
BsaBI GATNNNNATC 1 cut(s) 1347
BsaJI CCNNGG 7 cut(s) 29, 85, 906, 926, 927, 989, 990
BsaWI WCCGGW 1 cut(s) 429
BsaXI ACNNNNNCTCC 4 cut(s) 544, 574, 1425, 1455
Bsc4I CCNNNNNNNGG 3 cut(s) 29, 1190, 1388
Bse118I RCCGGY 1 cut(s) 594
Bse1I ACTGG 4 cut(s) 314, 806, 1009, 1069
Bse21I CCTNAGG 1 cut(s) 1470
Bse3DI GCAATG 1 cut(s) 247
Bse8I GATNNNNATC 1 cut(s) 1347
BseBI CCWGG 3 cut(s) 887, 928, 991
BseDI CCNNGG 7 cut(s) 29, 85, 906, 926, 927, 989, 990
BseGI GGATG 3 cut(s) 310, 1204, 1361
BseJI GATNNNNATC 1 cut(s) 1347
BseLI CCNNNNNNNGG 3 cut(s) 29, 1190, 1388
BseMI GCAATG 1 cut(s) 247
BseMII CTCAG 4 cut(s) 87, 384, 1123, 1461
BseNI ACTGG 4 cut(s) 314, 806, 1009, 1069
BseRI GAGGAG 2 cut(s) 15, 1299
BseXI GCAGC 5 cut(s) 232, 372, 939, 1092, 1396
BseYI CCCAGC 1 cut(s) 1064
BsgI GTGCAG 1 cut(s) 418
BshFI GGCC 2 cut(s) 104, 1450
BsiHKAI GWGCWC 1 cut(s) 1459
BsiHKCI CYCGRG 2 cut(s) 29, 816
BsiSI CCGG 5 cut(s) 30, 411, 430, 490, 595
BslI CCNNNNNNNGG 3 cut(s) 29, 1190, 1388
BsmAI GTCTC 3 cut(s) 9, 393, 897
BsmI GAATGC 1 cut(s) 417
BsnI GGCC 2 cut(s) 104, 1450
BsoBI CYCGRG 2 cut(s) 29, 816
Bsp1286I GDGCHC 1 cut(s) 1459
Bsp143I GATC 7 cut(s) 48, 66, 454, 850, 973, 1033, 1348
Bsp1720I GCTNAGC 1 cut(s) 1004
BspANI GGCC 2 cut(s) 104, 1450
BspCNI CTCAG 4 cut(s) 88, 385, 1122, 1462
BspLI GGNNCC 2 cut(s) 322, 1035
BspMAI CTGCAG 2 cut(s) 716, 776
BspMI ACCTGC 4 cut(s) 645, 705, 765, 1186
BspPI GGATC 3 cut(s) 858, 1028, 1041
BspQI GCTCTTC 2 cut(s) 300, 1258
BspTI CTTAAG 2 cut(s) 785, 1364
BsrDI GCAATG 1 cut(s) 247
BsrFI RCCGGY 1 cut(s) 594
BsrI ACTGG 4 cut(s) 314, 806, 1009, 1069
BssAI RCCGGY 1 cut(s) 594
BssECI CCNNGG 7 cut(s) 29, 85, 906, 926, 927, 989, 990
BssMI GATC 7 cut(s) 48, 66, 454, 850, 973, 1033, 1348
BssT1I CCWWGG 2 cut(s) 85, 906
Bst2UI CCWGG 3 cut(s) 887, 928, 991
Bst4CI ACNGT 2 cut(s) 341, 1501
Bst6I CTCTTC 6 cut(s) 113, 251, 264, 300, 609, 1258
BstAFI CTTAAG 2 cut(s) 785, 1364
BstBAI YACGTR 1 cut(s) 1454
BstC8I GCNNGC 4 cut(s) 401, 950, 1259, 1459
BstDEI CTNAG 5 cut(s) 96, 393, 1004, 1109, 1470
BstF5I GGATG 3 cut(s) 310, 1204, 1361
BstKTI GATC 7 cut(s) 51, 69, 457, 853, 976, 1036, 1351
BstMAI GTCTC 3 cut(s) 9, 393, 897
BstMBI GATC 7 cut(s) 48, 66, 454, 850, 973, 1033, 1348
BstMWI GCNNNNNNNGC 3 cut(s) 101, 360, 949
BstNI CCWGG 3 cut(s) 887, 928, 991
BstSCI CCNGG 7 cut(s) 28, 29, 410, 488, 885, 926, 989
BstSFI CTRYAG 2 cut(s) 712, 772
BstV1I GCAGC 5 cut(s) 232, 372, 939, 1092, 1396
BstV2I GAAGAC 3 cut(s) 183, 884, 1251
BstX2I RGATCY 2 cut(s) 48, 1033
BstYI RGATCY 2 cut(s) 48, 1033
Bsu36I CCTNAGG 1 cut(s) 1470
BsuI GTATCC 1 cut(s) 437
BsuRI GGCC 2 cut(s) 104, 1450
BtgZI GCGATG 1 cut(s) 69
BtsCI GGATG 3 cut(s) 310, 1204, 1361
BtsI GCAGTG 1 cut(s) 1047
BtsIMutI CAGTG 2 cut(s) 813, 1047
BveI ACCTGC 4 cut(s) 645, 705, 765, 1186
Cac8I GCNNGC 4 cut(s) 401, 950, 1259, 1459
Cfr10I RCCGGY 1 cut(s) 594
Cfr13I GGNCC 2 cut(s) 552, 903
Cfr9I CCCGGG 1 cut(s) 29
Csp6I GTAC 5 cut(s) 294, 342, 986, 1187, 1502
CspCI CAANNNNNGTGG 2 cut(s) 1321, 1356
CviAII CATG 2 cut(s) 266, 289
CviQI GTAC 5 cut(s) 294, 342, 986, 1187, 1502
DdeI CTNAG 5 cut(s) 96, 393, 1004, 1109, 1470
DpnI GATC 7 cut(s) 50, 68, 456, 852, 975, 1035, 1350
DpnII GATC 7 cut(s) 48, 66, 454, 850, 973, 1033, 1348
EaeI YGGCCR 1 cut(s) 1448
Eam1104I CTCTTC 6 cut(s) 113, 251, 264, 300, 609, 1258
EarI CTCTTC 6 cut(s) 113, 251, 264, 300, 609, 1258
Eco130I CCWWGG 2 cut(s) 85, 906
Eco47I GGWCC 2 cut(s) 552, 903
Eco72I CACGTG 1 cut(s) 1454
Eco81I CCTNAGG 1 cut(s) 1470
Eco88I CYCGRG 2 cut(s) 29, 816
EcoRI GAATTC 2 cut(s) 328, 479
EcoRII CCWGG 3 cut(s) 885, 926, 989
EcoT14I CCWWGG 2 cut(s) 85, 906
ErhI CCWWGG 2 cut(s) 85, 906
FaeI CATG 2 cut(s) 269, 292
FaiI YATR 7 cut(s) 36, 267, 290, 1481, 1485, 1495, 1497
FalI AAGNNNNNCTT 2 cut(s) 368, 400
FatI CATG 2 cut(s) 265, 288
FbaI TGATCA 1 cut(s) 1348
Fnu4HI GCNGC 5 cut(s) 221, 361, 953, 1106, 1410
FokI GGATG 3 cut(s) 297, 1211, 1368
Fsp4HI GCNGC 5 cut(s) 221, 361, 953, 1106, 1410
FspBI CTAG 5 cut(s) 156, 591, 945, 1050, 1227
GluI GCNGC 5 cut(s) 221, 361, 953, 1106, 1410
GsaI CCCAGC 1 cut(s) 1068
GsuI CTGGAG 2 cut(s) 501, 546
HaeIII GGCC 2 cut(s) 104, 1450
HapII CCGG 5 cut(s) 30, 411, 430, 490, 595
Hin1II CATG 2 cut(s) 269, 292
HinfI GANTC 3 cut(s) 620, 911, 1436
HpaII CCGG 5 cut(s) 30, 411, 430, 490, 595
Hpy166II GTNNAC 2 cut(s) 1175, 1325
Hpy188I TCNGA 3 cut(s) 337, 916, 1112
Hpy8I GTNNAC 2 cut(s) 1175, 1325
HpyAV CCTTC 7 cut(s) 37, 94, 145, 495, 840, 1134, 1188
HpyCH4III ACNGT 2 cut(s) 341, 1501
HpyCH4IV ACGT 1 cut(s) 1453
HpyCH4V TGCA 6 cut(s) 252, 399, 654, 714, 774, 1412
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 360, 949
HpyF3I CTNAG 5 cut(s) 96, 393, 1004, 1109, 1470
HpySE526I ACGT 1 cut(s) 1453
Hsp92II CATG 2 cut(s) 269, 292
Ksp22I TGATCA 1 cut(s) 1348
Kzo9I GATC 7 cut(s) 48, 66, 454, 850, 973, 1033, 1348
LguI GCTCTTC 2 cut(s) 300, 1258
LmnI GCTCC 5 cut(s) 87, 414, 520, 565, 1186
Lsp1109I GCAGC 5 cut(s) 232, 372, 939, 1092, 1396
LweI GCATC 3 cut(s) 319, 1141, 1277
MaeI CTAG 5 cut(s) 156, 591, 945, 1050, 1227
MaeII ACGT 1 cut(s) 1453
MaeIII GTNAC 2 cut(s) 630, 1415
MalI GATC 7 cut(s) 50, 68, 456, 852, 975, 1035, 1350
MboI GATC 7 cut(s) 48, 66, 454, 850, 973, 1033, 1348
MflI RGATCY 2 cut(s) 48, 1033
MhlI GDGCHC 1 cut(s) 1459
MlsI TGGCCA 1 cut(s) 1450
MluCI AATT 4 cut(s) 279, 328, 479, 1230
MluNI TGGCCA 1 cut(s) 1450
MlyI GAGTC 1 cut(s) 1445
Mox20I TGGCCA 1 cut(s) 1450
MscI TGGCCA 1 cut(s) 1450
MseI TTAA 6 cut(s) 78, 348, 786, 837, 1365, 1510
Msp20I TGGCCA 1 cut(s) 1450
MspA1I CMGCKG 2 cut(s) 952, 1123
MspCI CTTAAG 2 cut(s) 785, 1364
MspI CCGG 5 cut(s) 30, 411, 430, 490, 595
MspR9I CCNGG 7 cut(s) 30, 31, 412, 490, 887, 928, 991
Mva1269I GAATGC 1 cut(s) 417
MvaI CCWGG 3 cut(s) 887, 928, 991
MwoI GCNNNNNNNGC 3 cut(s) 101, 360, 949
NciI CCSGG 4 cut(s) 30, 31, 412, 490
NdeII GATC 7 cut(s) 48, 66, 454, 850, 973, 1033, 1348
NlaIII CATG 2 cut(s) 269, 292
NlaIV GGNNCC 2 cut(s) 322, 1035
NmuCI GTSAC 1 cut(s) 1415
PaeR7I CTCGAG 1 cut(s) 816
PasI CCCWGGG 2 cut(s) 927, 990
PciSI GCTCTTC 2 cut(s) 300, 1258
PctI GAATGC 1 cut(s) 417
PfeI GAWTC 2 cut(s) 620, 911
PflMI CCANNNNNTGG 1 cut(s) 1388
PkrI GCNGC 5 cut(s) 222, 362, 954, 1107, 1411
PleI GAGTC 1 cut(s) 1444
PmaCI CACGTG 1 cut(s) 1454
PmlI CACGTG 1 cut(s) 1454
PpsI GAGTC 1 cut(s) 1444
Ppu21I YACGTR 1 cut(s) 1454
Psp6I CCWGG 3 cut(s) 885, 926, 989
PspCI CACGTG 1 cut(s) 1454
PspFI CCCAGC 1 cut(s) 1064
PspGI CCWGG 3 cut(s) 885, 926, 989
PspN4I GGNNCC 2 cut(s) 322, 1035
PspPI GGNCC 2 cut(s) 552, 903
PstI CTGCAG 2 cut(s) 716, 776
PsuI RGATCY 2 cut(s) 48, 1033
PvuII CAGCTG 2 cut(s) 952, 1123
RsaI GTAC 5 cut(s) 295, 343, 987, 1188, 1503
RsaNI GTAC 5 cut(s) 294, 342, 986, 1187, 1502
SapI GCTCTTC 2 cut(s) 300, 1258
SaqAI TTAA 6 cut(s) 78, 348, 786, 837, 1365, 1510
SatI GCNGC 5 cut(s) 221, 361, 953, 1106, 1410
Sau3AI GATC 7 cut(s) 48, 66, 454, 850, 973, 1033, 1348
Sau96I GGNCC 2 cut(s) 552, 903
SbfI CCTGCAGG 2 cut(s) 716, 776
SchI GAGTC 1 cut(s) 1445
ScrFI CCNGG 7 cut(s) 30, 31, 412, 490, 887, 928, 991
SdaI CCTGCAGG 2 cut(s) 716, 776
SduI GDGCHC 1 cut(s) 1459
SfaNI GCATC 3 cut(s) 319, 1141, 1277
SfcI CTRYAG 2 cut(s) 712, 772
Sfr274I CTCGAG 1 cut(s) 816
SinI GGWCC 2 cut(s) 552, 903
SlaI CTCGAG 1 cut(s) 816
SmaI CCCGGG 1 cut(s) 31
SmlI CTYRAG 3 cut(s) 785, 816, 1364
SmoI CTYRAG 3 cut(s) 785, 816, 1364
Sse8387I CCTGCAGG 2 cut(s) 716, 776
Sse9I AATT 4 cut(s) 279, 328, 479, 1230
SspMI CTAG 5 cut(s) 156, 591, 945, 1050, 1227
StyD4I CCNGG 7 cut(s) 28, 29, 410, 488, 885, 926, 989
StyI CCWWGG 2 cut(s) 85, 906
TaaI ACNGT 2 cut(s) 341, 1501
TaiI ACGT 1 cut(s) 1456
TaqI TCGA 3 cut(s) 69, 817, 976
TaqII GACCGA 1 cut(s) 1263
TasI AATT 4 cut(s) 279, 328, 479, 1230
TatI WGTACW 1 cut(s) 1186
TfiI GAWTC 2 cut(s) 620, 911
Tru1I TTAA 6 cut(s) 78, 348, 786, 837, 1365, 1510
Tru9I TTAA 6 cut(s) 78, 348, 786, 837, 1365, 1510
TscAI CASTG 2 cut(s) 813, 1047
TseFI GTSAC 1 cut(s) 1415
TseI GCWGC 5 cut(s) 220, 360, 952, 1105, 1409
Tsp45I GTSAC 1 cut(s) 1415
TspDTI ATGAA 3 cut(s) 228, 282, 657
TspGWI ACGGA 1 cut(s) 317
TspMI CCCGGG 1 cut(s) 29
TspRI CASTG 2 cut(s) 813, 1047
Van91I CCANNNNNTGG 1 cut(s) 1388
Vha464I CTTAAG 2 cut(s) 785, 1364
VpaK11BI GGWCC 2 cut(s) 552, 903
XapI RAATTY 3 cut(s) 279, 328, 479
XbaI TCTAGA 2 cut(s) 1049, 1226
XhoI CTCGAG 1 cut(s) 816
XmaI CCCGGG 1 cut(s) 29
XspI CTAG 5 cut(s) 156, 591, 945, 1050, 1227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.