RLG00000016837

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0006081
Physical Location & Seq
Forward (+)
10511311 .. 10514388
3078 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016837

Sequence Viewer

Length: 1515 bp
ATGTCTCGGTGTTTTCCTTACCCTCCTCCCGGGTATGTGAAGAAGGGGATCTGCGATGAGGCTTTGATCGAACCGATTAAGCTCCAAGGAGAAGCTGAGAAGGCCAAGAAAGAAAAGAAGAGAGAGAAAAAACGAGAGAAGAAAGAAAAGAAGGCTAGAGAAAATGGGGAGGTTGAAGACAAGAAGCACCATTACAAAAAAGGGAACAAAGATGAAAGGCAGCAAGAAGATGAGAAAGTCAGGGAACATGGCAAGAAGAGAGAACGTGAAGAAGCTGAAATTCTGGACATGAGTACCCTAACGGAAGAGCATCCAGTTGGTTCCCAGAATTCTTCTGACAGTACCCTTAACAGCAATAACAGCAACAAAAGGCAGAAGCAGAACTTGTCTCCTGAGTGCAGGCAAAATACCGGGAGCATTCTTCGTATCCGGTTGCCTCTCCAAAGGCACAAAGATCAAGAAGTTCTACCGAGAGAGGAATTGCCTTCCCGGTTGCCTCCCCACAGGAACAAGGCTCCCGAGGAACAGCCTTTTCGGTTGCCTCTCCAAAGGACCAATGCTCCAGAAGTTTCTCCCAGAAAGAAACTGCCTAGCCAGTTGCCTCTTCAAAGAAACAAAGATTCAGCAGTGTTACCCAAAGAGGAACAGCCTTGCAGGTTGCCTCTACAAAGGAACAAACATCTGGAAGTGTTGCCCAAAGAGGAACAGTCCTGCAGGTTGCCTCTACAAAGGAACAAACATCTGGAAGTGTTGCCCAAAGAGGAACAACCCTGCAGGTTGCCTCTTAAGACACAGAAAGAACCACCAGTGCTAACTCGAGAGAAACAGCCTTCTCTTAAAAGGCAAAAGGATCAAGATGTTCTACCCAAAGAGAAAAAGACTTGCCTGGTGTCTCTCCAAAGGACCAAGGATTCAGAAGTATTACCCAGGGAGAAACAACAGCCTAACCAGCTGCCTCTTCAAACGAACATAGATAAAAAAATAGTACCCAGGGAGAAACAGCTTAGCCAGTTGCCTCTCCAAAGGAACAAGGATCCAGCAGTGCTATCTAGAGAGGAACAGCCAAGCCAGTCGCTTCTCCAAAAGCAGAAAGTTCCACAAGTGCTGCTCAGAGAAGAACAGCCGTGTTCTGTCTCTGGAAGGACTGCTGATGCCTCTGTTCAAGGTAGGTGTGAACCTGCTCCTGTACTTGGAAGAGATGAGGGAGAAAAACCCTGTTCTACTTCTGGAGTTGAGGGCAAAGAAGACCGAAAAAAAGGCAAGCGAAGAGCATCACAATACAAAGAGCTATTTGAGAAATGGGTTGAGCCTCCTCTTTTATTAAGTTTACCACCCACAGATACTGATGATGATCAGGGATGGTTGCTTAAGACGAATAAGAACCCAAACTGTGGGGTTGAGAAATGTGTTGATGCCAGTGACAGCTTGAGCTGTGGAGACTCGGTGTCTTGGCCACGTGCTCGCCTGTTGCCTGAGGTTGATATATATGCTTTGCCATATACCGTACCATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

505

Amino Acids

58.03

Weight (kDa)

9.31

Isoelectric Point (pI)

74.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 4 cut(s) 645, 705, 765, 1186
AccB7I CCANNNNNTGG 1 cut(s) 1391
AclWI GGATC 4 cut(s) 56, 858, 1028, 1041
AcoI YGGCCR 1 cut(s) 1451
AcsI RAATTY 2 cut(s) 279, 328
AcvI CACGTG 1 cut(s) 1457
AfaI GTAC 5 cut(s) 295, 343, 987, 1188, 1506
AfiI CCNNNNNNNGG 3 cut(s) 29, 1190, 1391
AflII CTTAAG 2 cut(s) 785, 1367
AgsI TTSAA 4 cut(s) 176, 608, 962, 1163
AhdI GACNNNNNGTC 1 cut(s) 1444
AjnI CCWGG 3 cut(s) 885, 926, 989
AluBI AGCT 8 cut(s) 82, 95, 275, 952, 1003, 1288, 1425, 1431
AluI AGCT 8 cut(s) 82, 95, 275, 952, 1003, 1288, 1425, 1431
Alw21I GWGCWC 1 cut(s) 1462
Alw26I GTCTC 5 cut(s) 9, 393, 897, 1138, 1431
AlwI GGATC 4 cut(s) 56, 858, 1028, 1041
AlwNI CAGNNNCTG 1 cut(s) 1343
Ama87I CYCGRG 3 cut(s) 29, 518, 816
AoxI GGCC 2 cut(s) 102, 1451
ApeKI GCWGC 3 cut(s) 220, 952, 1105
ApoI RAATTY 2 cut(s) 279, 328
AspS9I GGNCC 2 cut(s) 552, 903
AsuC2I CCSGG 4 cut(s) 30, 31, 412, 490
AvaI CYCGRG 3 cut(s) 29, 518, 816
AvaII GGWCC 2 cut(s) 552, 903
AxyI CCTNAGG 1 cut(s) 1473
BaeI ACNNNNGTAYC 2 cut(s) 277, 310
BalI TGGCCA 1 cut(s) 1453
BamHI GGATCC 1 cut(s) 1033
BarI GAAGNNNNNNTAC 2 cut(s) 176, 208
BbrPI CACGTG 1 cut(s) 1457
BbsI GAAGAC 2 cut(s) 183, 1251
Bbv12I GWGCWC 1 cut(s) 1462
BbvI GCAGC 3 cut(s) 232, 939, 1092
BccI CCATC 1 cut(s) 1353
BceAI ACGGC 1 cut(s) 1108
BciT130I CCWGG 3 cut(s) 887, 928, 991
BciVI GTATCC 1 cut(s) 437
BclI TGATCA 1 cut(s) 1351
BcnI CCSGG 4 cut(s) 30, 31, 412, 490
BcoDI GTCTC 5 cut(s) 9, 393, 897, 1138, 1431
BfaI CTAG 3 cut(s) 156, 591, 1050
BfmI CTRYAG 2 cut(s) 712, 772
BfrI CTTAAG 2 cut(s) 785, 1367
BfuAI ACCTGC 4 cut(s) 645, 705, 765, 1186
BfuI GTATCC 1 cut(s) 437
BisI GCNGC 3 cut(s) 221, 953, 1106
BlpI GCTNAGC 1 cut(s) 1004
BlsI GCNGC 3 cut(s) 222, 954, 1107
Bme1390I CCNGG 7 cut(s) 30, 31, 412, 490, 887, 928, 991
Bme18I GGWCC 2 cut(s) 552, 903
BmeRI GACNNNNNGTC 1 cut(s) 1444
BmeT110I CYCGRG 3 cut(s) 29, 518, 816
BmgT120I GGNCC 2 cut(s) 552, 903
BmiI GGNNCC 3 cut(s) 322, 516, 1035
BmrFI CCNGG 7 cut(s) 30, 31, 412, 490, 887, 928, 991
BmsI GCATC 4 cut(s) 319, 1141, 1280, 1402
BpiI GAAGAC 2 cut(s) 183, 1251
BpmI CTGGAG 2 cut(s) 546, 1248
Bpu1102I GCTNAGC 1 cut(s) 1004
BpuEI CTTGAG 1 cut(s) 1447
BpuMI CCSGG 4 cut(s) 30, 31, 412, 490
BsaAI YACGTR 1 cut(s) 1457
BsaBI GATNNNNATC 1 cut(s) 1350
BsaJI CCNNGG 8 cut(s) 29, 85, 519, 906, 926, 927, 989, 990
BsaWI WCCGGW 1 cut(s) 429
BsaXI ACNNNNNCTCC 4 cut(s) 544, 574, 1428, 1458
Bsc4I CCNNNNNNNGG 3 cut(s) 29, 1190, 1391
Bse1I ACTGG 6 cut(s) 314, 595, 806, 1009, 1069, 1416
Bse21I CCTNAGG 1 cut(s) 1473
Bse8I GATNNNNATC 1 cut(s) 1350
BseBI CCWGG 3 cut(s) 887, 928, 991
BseDI CCNNGG 8 cut(s) 29, 85, 519, 906, 926, 927, 989, 990
BseGI GGATG 2 cut(s) 310, 1364
BseJI GATNNNNATC 1 cut(s) 1350
BseLI CCNNNNNNNGG 3 cut(s) 29, 1190, 1391
BseMII CTCAG 4 cut(s) 87, 384, 1123, 1464
BseNI ACTGG 6 cut(s) 314, 595, 806, 1009, 1069, 1416
BseRI GAGGAG 2 cut(s) 15, 1302
BseXI GCAGC 3 cut(s) 232, 939, 1092
BsgI GTGCAG 1 cut(s) 418
BshFI GGCC 2 cut(s) 104, 1453
BsiHKAI GWGCWC 1 cut(s) 1462
BsiHKCI CYCGRG 3 cut(s) 29, 518, 816
BsiSI CCGG 4 cut(s) 30, 411, 430, 490
BslI CCNNNNNNNGG 3 cut(s) 29, 1190, 1391
BsmAI GTCTC 5 cut(s) 9, 393, 897, 1138, 1431
BsmI GAATGC 1 cut(s) 417
BsnI GGCC 2 cut(s) 104, 1453
BsoBI CYCGRG 3 cut(s) 29, 518, 816
Bsp1286I GDGCHC 1 cut(s) 1462
Bsp143I GATC 6 cut(s) 48, 66, 454, 850, 1033, 1351
Bsp1720I GCTNAGC 1 cut(s) 1004
BspANI GGCC 2 cut(s) 104, 1453
BspCNI CTCAG 4 cut(s) 88, 385, 1122, 1465
BspLI GGNNCC 3 cut(s) 322, 516, 1035
BspMAI CTGCAG 2 cut(s) 716, 776
BspMI ACCTGC 4 cut(s) 645, 705, 765, 1186
BspPI GGATC 4 cut(s) 56, 858, 1028, 1041
BspQI GCTCTTC 2 cut(s) 300, 1261
BspTI CTTAAG 2 cut(s) 785, 1367
BsrI ACTGG 6 cut(s) 314, 595, 806, 1009, 1069, 1416
BssECI CCNNGG 8 cut(s) 29, 85, 519, 906, 926, 927, 989, 990
BssMI GATC 6 cut(s) 48, 66, 454, 850, 1033, 1351
BssT1I CCWWGG 2 cut(s) 85, 906
Bst2UI CCWGG 3 cut(s) 887, 928, 991
Bst4CI ACNGT 4 cut(s) 341, 708, 1391, 1504
Bst6I CTCTTC 7 cut(s) 113, 251, 300, 609, 963, 1189, 1261
BstAFI CTTAAG 2 cut(s) 785, 1367
BstBAI YACGTR 1 cut(s) 1457
BstC8I GCNNGC 3 cut(s) 401, 1262, 1462
BstDEI CTNAG 5 cut(s) 96, 393, 1004, 1109, 1473
BstF5I GGATG 2 cut(s) 310, 1364
BstKTI GATC 6 cut(s) 51, 69, 457, 853, 1036, 1354
BstMAI GTCTC 5 cut(s) 9, 393, 897, 1138, 1431
BstMBI GATC 6 cut(s) 48, 66, 454, 850, 1033, 1351
BstMWI GCNNNNNNNGC 3 cut(s) 101, 360, 949
BstNI CCWGG 3 cut(s) 887, 928, 991
BstSCI CCNGG 7 cut(s) 28, 29, 410, 488, 885, 926, 989
BstSFI CTRYAG 2 cut(s) 712, 772
BstV1I GCAGC 3 cut(s) 232, 939, 1092
BstV2I GAAGAC 2 cut(s) 183, 1251
BstX2I RGATCY 2 cut(s) 48, 1033
BstYI RGATCY 2 cut(s) 48, 1033
Bsu36I CCTNAGG 1 cut(s) 1473
BsuI GTATCC 1 cut(s) 437
BsuRI GGCC 2 cut(s) 104, 1453
BtgZI GCGATG 1 cut(s) 69
BtsCI GGATG 2 cut(s) 310, 1364
BtsI GCAGTG 2 cut(s) 633, 1047
BtsIMutI CAGTG 4 cut(s) 633, 813, 1047, 1423
BveI ACCTGC 4 cut(s) 645, 705, 765, 1186
Cac8I GCNNGC 3 cut(s) 401, 1262, 1462
CaiI CAGNNNCTG 1 cut(s) 1343
Cfr13I GGNCC 2 cut(s) 552, 903
Cfr9I CCCGGG 1 cut(s) 29
Csp6I GTAC 5 cut(s) 294, 342, 986, 1187, 1505
CviAII CATG 2 cut(s) 248, 289
CviQI GTAC 5 cut(s) 294, 342, 986, 1187, 1505
DdeI CTNAG 5 cut(s) 96, 393, 1004, 1109, 1473
DpnI GATC 6 cut(s) 50, 68, 456, 852, 1035, 1353
DpnII GATC 6 cut(s) 48, 66, 454, 850, 1033, 1351
DriI GACNNNNNGTC 1 cut(s) 1444
EaeI YGGCCR 1 cut(s) 1451
Eam1104I CTCTTC 7 cut(s) 113, 251, 300, 609, 963, 1189, 1261
Eam1105I GACNNNNNGTC 1 cut(s) 1444
EarI CTCTTC 7 cut(s) 113, 251, 300, 609, 963, 1189, 1261
Eco130I CCWWGG 2 cut(s) 85, 906
Eco47I GGWCC 2 cut(s) 552, 903
Eco72I CACGTG 1 cut(s) 1457
Eco81I CCTNAGG 1 cut(s) 1473
Eco88I CYCGRG 3 cut(s) 29, 518, 816
EcoRI GAATTC 1 cut(s) 328
EcoRII CCWGG 3 cut(s) 885, 926, 989
EcoT14I CCWWGG 2 cut(s) 85, 906
ErhI CCWWGG 2 cut(s) 85, 906
FaeI CATG 2 cut(s) 251, 292
FaiI YATR 9 cut(s) 36, 249, 290, 971, 1484, 1486, 1488, 1498, 1500
FalI AAGNNNNNCTT 2 cut(s) 368, 400
FatI CATG 2 cut(s) 247, 288
FbaI TGATCA 1 cut(s) 1351
Fnu4HI GCNGC 3 cut(s) 221, 953, 1106
FokI GGATG 2 cut(s) 297, 1371
Fsp4HI GCNGC 3 cut(s) 221, 953, 1106
FspBI CTAG 3 cut(s) 156, 591, 1050
GluI GCNGC 3 cut(s) 221, 953, 1106
GsuI CTGGAG 2 cut(s) 546, 1248
HaeIII GGCC 2 cut(s) 104, 1453
HapII CCGG 4 cut(s) 30, 411, 430, 490
Hin1II CATG 2 cut(s) 251, 292
HinfI GANTC 3 cut(s) 620, 911, 1439
HpaII CCGG 4 cut(s) 30, 411, 430, 490
Hpy166II GTNNAC 2 cut(s) 1175, 1328
Hpy188I TCNGA 3 cut(s) 337, 916, 1112
Hpy8I GTNNAC 2 cut(s) 1175, 1328
HpyAV CCTTC 6 cut(s) 37, 94, 145, 495, 840, 1134
HpyCH4III ACNGT 4 cut(s) 341, 708, 1391, 1504
HpyCH4IV ACGT 2 cut(s) 265, 1456
HpyCH4V TGCA 4 cut(s) 399, 654, 714, 774
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 360, 949
HpyF3I CTNAG 5 cut(s) 96, 393, 1004, 1109, 1473
HpySE526I ACGT 2 cut(s) 265, 1456
Hsp92II CATG 2 cut(s) 251, 292
Ksp22I TGATCA 1 cut(s) 1351
Kzo9I GATC 6 cut(s) 48, 66, 454, 850, 1033, 1351
LguI GCTCTTC 2 cut(s) 300, 1261
LmnI GCTCC 5 cut(s) 87, 414, 520, 565, 1186
Lsp1109I GCAGC 3 cut(s) 232, 939, 1092
LweI GCATC 4 cut(s) 319, 1141, 1280, 1402
MaeI CTAG 3 cut(s) 156, 591, 1050
MaeII ACGT 2 cut(s) 265, 1456
MaeIII GTNAC 2 cut(s) 630, 1418
MalI GATC 6 cut(s) 50, 68, 456, 852, 1035, 1353
MboI GATC 6 cut(s) 48, 66, 454, 850, 1033, 1351
MflI RGATCY 2 cut(s) 48, 1033
MhlI GDGCHC 1 cut(s) 1462
MlsI TGGCCA 1 cut(s) 1453
MluCI AATT 3 cut(s) 279, 328, 479
MluNI TGGCCA 1 cut(s) 1453
MlyI GAGTC 1 cut(s) 1433
Mox20I TGGCCA 1 cut(s) 1453
MscI TGGCCA 1 cut(s) 1453
MseI TTAA 7 cut(s) 78, 348, 786, 837, 1322, 1368, 1513
Msp20I TGGCCA 1 cut(s) 1453
MspA1I CMGCKG 1 cut(s) 952
MspCI CTTAAG 2 cut(s) 785, 1367
MspI CCGG 4 cut(s) 30, 411, 430, 490
MspR9I CCNGG 7 cut(s) 30, 31, 412, 490, 887, 928, 991
Mva1269I GAATGC 1 cut(s) 417
MvaI CCWGG 3 cut(s) 887, 928, 991
MwoI GCNNNNNNNGC 3 cut(s) 101, 360, 949
NciI CCSGG 4 cut(s) 30, 31, 412, 490
NdeII GATC 6 cut(s) 48, 66, 454, 850, 1033, 1351
NlaIII CATG 2 cut(s) 251, 292
NlaIV GGNNCC 3 cut(s) 322, 516, 1035
NmuCI GTSAC 1 cut(s) 1418
PaeR7I CTCGAG 1 cut(s) 816
PasI CCCWGGG 2 cut(s) 927, 990
PciSI GCTCTTC 2 cut(s) 300, 1261
PctI GAATGC 1 cut(s) 417
PfeI GAWTC 2 cut(s) 620, 911
PflMI CCANNNNNTGG 1 cut(s) 1391
PkrI GCNGC 3 cut(s) 222, 954, 1107
PleI GAGTC 1 cut(s) 1433
PmaCI CACGTG 1 cut(s) 1457
PmlI CACGTG 1 cut(s) 1457
PpsI GAGTC 1 cut(s) 1433
Ppu21I YACGTR 1 cut(s) 1457
Psp6I CCWGG 3 cut(s) 885, 926, 989
PspCI CACGTG 1 cut(s) 1457
PspGI CCWGG 3 cut(s) 885, 926, 989
PspN4I GGNNCC 3 cut(s) 322, 516, 1035
PspPI GGNCC 2 cut(s) 552, 903
PstI CTGCAG 2 cut(s) 716, 776
PstNI CAGNNNCTG 1 cut(s) 1343
PsuI RGATCY 2 cut(s) 48, 1033
PvuII CAGCTG 1 cut(s) 952
RsaI GTAC 5 cut(s) 295, 343, 987, 1188, 1506
RsaNI GTAC 5 cut(s) 294, 342, 986, 1187, 1505
SapI GCTCTTC 2 cut(s) 300, 1261
SaqAI TTAA 7 cut(s) 78, 348, 786, 837, 1322, 1368, 1513
SatI GCNGC 3 cut(s) 221, 953, 1106
Sau3AI GATC 6 cut(s) 48, 66, 454, 850, 1033, 1351
Sau96I GGNCC 2 cut(s) 552, 903
SbfI CCTGCAGG 2 cut(s) 716, 776
SchI GAGTC 1 cut(s) 1433
ScrFI CCNGG 7 cut(s) 30, 31, 412, 490, 887, 928, 991
SdaI CCTGCAGG 2 cut(s) 716, 776
SduI GDGCHC 1 cut(s) 1462
SfaNI GCATC 4 cut(s) 319, 1141, 1280, 1402
SfcI CTRYAG 2 cut(s) 712, 772
Sfr274I CTCGAG 1 cut(s) 816
SinI GGWCC 2 cut(s) 552, 903
SlaI CTCGAG 1 cut(s) 816
SmaI CCCGGG 1 cut(s) 31
SmlI CTYRAG 4 cut(s) 785, 816, 1367, 1426
SmoI CTYRAG 4 cut(s) 785, 816, 1367, 1426
Sse8387I CCTGCAGG 2 cut(s) 716, 776
Sse9I AATT 3 cut(s) 279, 328, 479
SspMI CTAG 3 cut(s) 156, 591, 1050
StyD4I CCNGG 7 cut(s) 28, 29, 410, 488, 885, 926, 989
StyI CCWWGG 2 cut(s) 85, 906
TaaI ACNGT 4 cut(s) 341, 708, 1391, 1504
TaiI ACGT 2 cut(s) 268, 1459
TaqI TCGA 2 cut(s) 69, 817
TaqII GACCGA 1 cut(s) 1263
TasI AATT 3 cut(s) 279, 328, 479
TatI WGTACW 1 cut(s) 1186
TfiI GAWTC 2 cut(s) 620, 911
Tru1I TTAA 7 cut(s) 78, 348, 786, 837, 1322, 1368, 1513
Tru9I TTAA 7 cut(s) 78, 348, 786, 837, 1322, 1368, 1513
TscAI CASTG 4 cut(s) 633, 813, 1047, 1423
TseFI GTSAC 1 cut(s) 1418
TseI GCWGC 3 cut(s) 220, 952, 1105
Tsp45I GTSAC 1 cut(s) 1418
TspDTI ATGAA 1 cut(s) 228
TspGWI ACGGA 1 cut(s) 317
TspMI CCCGGG 1 cut(s) 29
TspRI CASTG 4 cut(s) 633, 813, 1047, 1423
Van91I CCANNNNNTGG 1 cut(s) 1391
Vha464I CTTAAG 2 cut(s) 785, 1367
VpaK11BI GGWCC 2 cut(s) 552, 903
XapI RAATTY 2 cut(s) 279, 328
XbaI TCTAGA 1 cut(s) 1049
XhoI CTCGAG 1 cut(s) 816
XmaI CCCGGG 1 cut(s) 29
XspI CTAG 3 cut(s) 156, 591, 1050
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.