Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0006081

Physical Location & Seq

Genomic Coordinates Reverse (-)

10247563 .. 10249639

Gene Structure 2077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1126500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGTACAAACTCCAAAGAGAAGATGAGAAGGCCAAGAAGGAAAAGAAGAGGGAGAAAAAACGAGAGAAGAAAGAAAAGAAGGCTCGAGAAAATGGGGAGCCTGAAAATAAGAAGCACAGTCAGAAGAAAAGGCACAAAGATGAAAGGCATCAAGAAGACAAGAAAGGTACAGACCATGGAAAGAAGAGAAAACATGAAACGGAAAACCTTGACAAGAGTGGCCTTACTGAAGAACACGAGCAACCAGTTGGTTCCCAGAACTCTTCTGATAGCACCGTTGACAGCAACAAAAGGCAGAAGCAGGACTCTCCCCCTGATGGCAGGCATAATTCTGCAAGCATTCTTCGGATCCGGTTGCCTCTCCAAAGGCACAAAGATCCTGAACTGCTACCCAGAGAGGAGCAGCCTTGCCAGTTCCCTCTTAAAACGCACAAAGATCCAGTGGTGCTATCCAGAGAGAAACAACCTTGCCAGTTGCCTCTCCAAAAGCACAAGGATCGAGTAGTGCTACCCAAAGAGGAACAGCCTTGCCGGTTGTCTCTTCAGAGGAACAAAGATCCAGAAGCGCTACCCAGTCCTGAACAGCCTTGCCGGTTGTCTCTCCAAAGGCAAAAAGGTGCAGAAGTTCTATCCAGCCAGGAACAGCCTTCCAGGTTGTCTTTCCAAAGGCCTAAAGGTCCAGATGTTCTCCCAAGCCAGGAACAGCCTTCCCGGTTGTCACTTCAAAGGCCTAAAGGTCCAGAAGTGCTACCTAGCCAAGGACACCCTTGCTCTTCCTCAGGAAGGACAGATAATGCCTTTGTTGAAGGACTGCAAGAACCTGCTCCTAAACAAGGTGTGGATGAGGGACGGCATCCGTGCTCTACTTCTGGAAATGCTAGCAATGAACGCTCTTCCAGGCGTGGTAAAGAAAAACACCGAAAATCTGGCAGTGGTTCTTTTCCTTCACAATACAGAGAGCTAATTGAAAACTGGGTTCAACCTCCTCTCTCACAATGTCTTCCCGTGGATATCGACGATGAGGGATGGTTTGAGGCAAAGACAAAATGGAACTGTGGCGTTGAGAAACCTACAGTCGTCAGTGACAGCCTGAGCTACAGTGATGCAACGTCTTGGCCATGTGCTCGCCTCTTCCCTGAGTCCGATATATGTGCATTGCCATACACAGTACCGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

393

Amino Acids

44.75

Weight (kDa)

9.17

Isoelectric Point (pI)

70.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17787 AT4G35940 AT4G35940 AT4G35940 AT4G35940 AT4G35940 AT4G35940 AT4G35940 AT4G35940
fragaria_vesca	FvH4_1g11400
malus_domestica	MD02G1126500.v1.1 MD15G1242000.v1.1 MD15G1242200.v1.1
prunus_persica	Prupe.7G171900_v2.0.a1 Prupe.7G171900_v2.0.a1
pyrus_communis	pycom02g09880 pycom15g21350
rosa_chinensis	RchiOBHm_Chr2g0098961
rosa_laevigata	RLG00000016837
rosa_multiflora	Rmu_sc0000577.1_g000007
rosa_roxburghii	Rroxscaffold_2G00143540
rosa_rugosa	Rorug02G0075300
rosa_samantha	Rh2AG124800 Rh2BG128000 Rh2CG128900 Rh2DG129100
rosa_wichuraiana	Rw2G009580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	829
AclWI	GGATC	6 cut(s)	343, 356, 371, 431, 504, 551
AcoI	YGGCCR	1 cut(s)	1115
AcuI	CTGAAG	2 cut(s)	249, 527
AfaI	GTAC	3 cut(s)	5, 169, 1170
AfeI	AGCGCT	1 cut(s)	567
AfiI	CCNNNNNNNGG	5 cut(s)	317, 697, 758, 783, 833
AgsI	TTSAA	4 cut(s)	725, 806, 968, 980
AjnI	CCWGG	4 cut(s)	636, 650, 696, 896
AluBI	AGCT	2 cut(s)	961, 1095
AluI	AGCT	2 cut(s)	961, 1095
Alw21I	GWGCWC	2 cut(s)	863, 1126
Alw26I	GTCTC	2 cut(s)	543, 603
AlwI	GGATC	6 cut(s)	343, 356, 371, 431, 504, 551
Ama87I	CYCGRG	1 cut(s)	84
Aor51HI	AGCGCT	1 cut(s)	567
AoxI	GGCC	5 cut(s)	30, 220, 668, 728, 1115
ApeKI	GCWGC	1 cut(s)	403
AspLEI	GCGC	1 cut(s)	568
AspS9I	GGNCC	2 cut(s)	677, 737
AsuC2I	CCSGG	1 cut(s)	712
AsuNHI	GCTAGC	1 cut(s)	878
AvaI	CYCGRG	1 cut(s)	84
AvaII	GGWCC	2 cut(s)	677, 737
AxyI	CCTNAGG	1 cut(s)	778
BalI	TGGCCA	1 cut(s)	1117
BamHI	GGATCC	1 cut(s)	348
BauI	CACGAG	1 cut(s)	236
BbsI	GAAGAC	2 cut(s)	162, 992
Bbv12I	GWGCWC	2 cut(s)	863, 1126
BbvI	GCAGC	1 cut(s)	415
BccI	CCATC	2 cut(s)	311, 1020
BceAI	ACGGC	1 cut(s)	866
BcgI	CGANNNNNNTGC	4 cut(s)	479, 513, 1133, 1167
BciT130I	CCWGG	4 cut(s)	638, 652, 698, 898
BcnI	CCSGG	1 cut(s)	712
BcoDI	GTCTC	2 cut(s)	543, 603
BfaI	CTAG	2 cut(s)	753, 879
BfmI	CTRYAG	2 cut(s)	1071, 1096
BfoI	RGCGCY	1 cut(s)	569
BfuAI	ACCTGC	1 cut(s)	829
BisI	GCNGC	1 cut(s)	404
BlsI	GCNGC	1 cut(s)	405
Bme1390I	CCNGG	5 cut(s)	638, 652, 698, 712, 898
Bme18I	GGWCC	2 cut(s)	677, 737
BmeT110I	CYCGRG	1 cut(s)	84
BmgT120I	GGNCC	2 cut(s)	677, 737
BmiI	GGNNCC	3 cut(s)	99, 253, 350
BmrFI	CCNGG	5 cut(s)	638, 652, 698, 712, 898
BmrI	ACTGGG	2 cut(s)	567, 982
BmsI	GCATC	3 cut(s)	157, 862, 1093
BmtI	GCTAGC	1 cut(s)	882
BmuI	ACTGGG	2 cut(s)	567, 982
BpiI	GAAGAC	2 cut(s)	162, 992
Bpu10I	CCTNAGC	1 cut(s)	1091
BpuMI	CCSGG	1 cut(s)	712
BsaJI	CCNNGG	3 cut(s)	175, 757, 1005
BsaWI	WCCGGW	1 cut(s)	351
Bsc4I	CCNNNNNNNGG	5 cut(s)	317, 697, 758, 783, 833
Bse118I	RCCGGY	2 cut(s)	531, 591
Bse1I	ACTGG	6 cut(s)	245, 412, 440, 472, 573, 977
Bse21I	CCTNAGG	1 cut(s)	778
Bse3DI	GCAATG	2 cut(s)	889, 1154
BseBI	CCWGG	4 cut(s)	638, 652, 698, 898
BseDI	CCNNGG	3 cut(s)	175, 757, 1005
BseGI	GGATG	3 cut(s)	847, 853, 1031
BseLI	CCNNNNNNNGG	5 cut(s)	317, 697, 758, 783, 833
BseMI	GCAATG	2 cut(s)	889, 1154
BseMII	CTCAG	3 cut(s)	792, 1082, 1128
BseNI	ACTGG	6 cut(s)	245, 412, 440, 472, 573, 977
BseRI	GAGGAG	2 cut(s)	413, 975
BseXI	GCAGC	1 cut(s)	415
BsgI	GTGCAG	1 cut(s)	639
BshFI	GGCC	5 cut(s)	32, 222, 670, 730, 1117
BsiHKAI	GWGCWC	2 cut(s)	863, 1126
BsiHKCI	CYCGRG	1 cut(s)	84
BsiSI	CCGG	4 cut(s)	352, 532, 592, 712
BslFI	GGGAC	1 cut(s)	861
BslI	CCNNNNNNNGG	5 cut(s)	317, 697, 758, 783, 833
BsmAI	GTCTC	2 cut(s)	543, 603
BsmFI	GGGAC	1 cut(s)	861
BsmI	GAATGC	1 cut(s)	339
BsnI	GGCC	5 cut(s)	32, 222, 670, 730, 1117
BsoBI	CYCGRG	1 cut(s)	84
Bsp1286I	GDGCHC	2 cut(s)	863, 1126
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	5 cut(s)	348, 376, 436, 496, 556
Bsp19I	CCATGG	1 cut(s)	175
BspANI	GGCC	5 cut(s)	32, 222, 670, 730, 1117
BspCNI	CTCAG	3 cut(s)	791, 1083, 1129
BspLI	GGNNCC	3 cut(s)	99, 253, 350
BspMI	ACCTGC	1 cut(s)	829
BspOI	GCTAGC	1 cut(s)	882
BspPI	GGATC	6 cut(s)	343, 356, 371, 431, 504, 551
BspQI	GCTCTTC	2 cut(s)	778, 898
BsrDI	GCAATG	2 cut(s)	889, 1154
BsrFI	RCCGGY	2 cut(s)	531, 591
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	6 cut(s)	245, 412, 440, 472, 573, 977
BssAI	RCCGGY	2 cut(s)	531, 591
BssECI	CCNNGG	3 cut(s)	175, 757, 1005
BssMI	GATC	5 cut(s)	348, 376, 436, 496, 556
BssSI	CACGAG	1 cut(s)	236
BssT1I	CCWWGG	2 cut(s)	175, 757
Bst2BI	CACGAG	1 cut(s)	236
Bst2UI	CCWGG	4 cut(s)	638, 652, 698, 898
Bst4CI	ACNGT	7 cut(s)	119, 277, 1055, 1075, 1100, 1168, 1173
Bst6I	CTCTTC	7 cut(s)	41, 179, 268, 546, 778, 898, 1136
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	4 cut(s)	323, 337, 880, 1126
BstDEI	CTNAG	3 cut(s)	778, 1091, 1137
BstDSI	CCRYGG	2 cut(s)	175, 1005
BstENI	CCTNNNNNAGG	3 cut(s)	756, 781, 831
BstF5I	GGATG	3 cut(s)	847, 853, 1031
BstH2I	RGCGCY	1 cut(s)	569
BstHHI	GCGC	1 cut(s)	568
BstKTI	GATC	5 cut(s)	351, 379, 439, 499, 559
BstMAI	GTCTC	2 cut(s)	543, 603
BstMBI	GATC	5 cut(s)	348, 376, 436, 496, 556
BstMWI	GCNNNNNNNGC	1 cut(s)	888
BstNI	CCWGG	4 cut(s)	638, 652, 698, 898
BstSCI	CCNGG	5 cut(s)	636, 650, 696, 710, 896
BstSFI	CTRYAG	2 cut(s)	1071, 1096
BstV1I	GCAGC	1 cut(s)	415
BstV2I	GAAGAC	2 cut(s)	162, 992
BstX2I	RGATCY	4 cut(s)	348, 376, 436, 556
BstYI	RGATCY	4 cut(s)	348, 376, 436, 556
Bsu36I	CCTNAGG	1 cut(s)	778
BsuRI	GGCC	5 cut(s)	32, 222, 670, 730, 1117
BtgI	CCRYGG	2 cut(s)	175, 1005
BtsCI	GGATG	3 cut(s)	847, 853, 1031
BtsI	GCAGTG	1 cut(s)	937
BtsIMutI	CAGTG	4 cut(s)	447, 937, 1087, 1105
BveI	ACCTGC	1 cut(s)	829
Cac8I	GCNNGC	4 cut(s)	323, 337, 880, 1126
CfoI	GCGC	1 cut(s)	568
Cfr10I	RCCGGY	2 cut(s)	531, 591
Cfr13I	GGNCC	2 cut(s)	677, 737
Csp6I	GTAC	3 cut(s)	4, 168, 1169
CviAII	CATG	3 cut(s)	176, 194, 1119
CviQI	GTAC	3 cut(s)	4, 168, 1169
DdeI	CTNAG	3 cut(s)	778, 1091, 1137
DpnI	GATC	5 cut(s)	350, 378, 438, 498, 558
DpnII	GATC	5 cut(s)	348, 376, 436, 496, 556
EaeI	YGGCCR	1 cut(s)	1115
Eam1104I	CTCTTC	7 cut(s)	41, 179, 268, 546, 778, 898, 1136
EarI	CTCTTC	7 cut(s)	41, 179, 268, 546, 778, 898, 1136
Eco130I	CCWWGG	2 cut(s)	175, 757
Eco147I	AGGCCT	2 cut(s)	670, 730
Eco32I	GATATC	1 cut(s)	1012
Eco47I	GGWCC	2 cut(s)	677, 737
Eco47III	AGCGCT	1 cut(s)	567
Eco57I	CTGAAG	2 cut(s)	249, 527
Eco81I	CCTNAGG	1 cut(s)	778
Eco88I	CYCGRG	1 cut(s)	84
EcoNI	CCTNNNNNAGG	3 cut(s)	756, 781, 831
EcoRII	CCWGG	4 cut(s)	636, 650, 696, 896
EcoRV	GATATC	1 cut(s)	1012
EcoT14I	CCWWGG	2 cut(s)	175, 757
ErhI	CCWWGG	2 cut(s)	175, 757
FaeI	CATG	3 cut(s)	179, 197, 1122
FaiI	YATR	7 cut(s)	177, 195, 327, 1120, 1148, 1150, 1162
FaqI	GGGAC	1 cut(s)	861
FatI	CATG	3 cut(s)	175, 193, 1118
Fnu4HI	GCNGC	1 cut(s)	404
FokI	GGATG	3 cut(s)	840, 854, 1038
Fsp4HI	GCNGC	1 cut(s)	404
FspBI	CTAG	2 cut(s)	753, 879
GlaI	GCGC	1 cut(s)	567
GluI	GCNGC	1 cut(s)	404
HaeII	RGCGCY	1 cut(s)	569
HaeIII	GGCC	5 cut(s)	32, 222, 670, 730, 1117
HapII	CCGG	4 cut(s)	352, 532, 592, 712
HhaI	GCGC	1 cut(s)	568
Hin1II	CATG	3 cut(s)	179, 197, 1122
Hin6I	GCGC	1 cut(s)	566
HinP1I	GCGC	1 cut(s)	566
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HinfI	GANTC	2 cut(s)	305, 1139
HpaII	CCGG	4 cut(s)	352, 532, 592, 712
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	5 cut(s)	123, 268, 348, 546, 1144
Hpy8I	GTNNAC	1 cut(s)	280
Hpy99I	CGWCG	1 cut(s)	1019
HpyAV	CCTTC	8 cut(s)	22, 31, 73, 657, 717, 777, 800, 954
HpyCH4III	ACNGT	7 cut(s)	119, 277, 1055, 1075, 1100, 1168, 1173
HpyCH4IV	ACGT	1 cut(s)	1109
HpyCH4V	TGCA	5 cut(s)	335, 620, 814, 1106, 1154
HpyF10VI	GCNNNNNNNGC	1 cut(s)	888
HpyF3I	CTNAG	3 cut(s)	778, 1091, 1137
HpySE526I	ACGT	1 cut(s)	1109
Hsp92II	CATG	3 cut(s)	179, 197, 1122
HspAI	GCGC	1 cut(s)	566
Kzo9I	GATC	5 cut(s)	348, 376, 436, 496, 556
LguI	GCTCTTC	2 cut(s)	778, 898
LmnI	GCTCC	3 cut(s)	97, 400, 829
Lsp1109I	GCAGC	1 cut(s)	415
LweI	GCATC	3 cut(s)	157, 862, 1093
MaeI	CTAG	2 cut(s)	753, 879
MaeII	ACGT	1 cut(s)	1109
MaeIII	GTNAC	2 cut(s)	717, 1082
MalI	GATC	5 cut(s)	350, 378, 438, 498, 558
MboI	GATC	5 cut(s)	348, 376, 436, 496, 556
MflI	RGATCY	4 cut(s)	348, 376, 436, 556
MhlI	GDGCHC	2 cut(s)	863, 1126
MlsI	TGGCCA	1 cut(s)	1117
MluCI	AATT	2 cut(s)	328, 963
MluNI	TGGCCA	1 cut(s)	1117
MlyI	GAGTC	2 cut(s)	299, 1148
Mox20I	TGGCCA	1 cut(s)	1117
MscI	TGGCCA	1 cut(s)	1117
MseI	TTAA	1 cut(s)	423
MslI	CAYNNNNRTG	1 cut(s)	138
Msp20I	TGGCCA	1 cut(s)	1117
MspI	CCGG	4 cut(s)	352, 532, 592, 712
MspR9I	CCNGG	5 cut(s)	638, 652, 698, 712, 898
Mva1269I	GAATGC	1 cut(s)	339
MvaI	CCWGG	4 cut(s)	638, 652, 698, 898
MwoI	GCNNNNNNNGC	1 cut(s)	888
NciI	CCSGG	1 cut(s)	712
NcoI	CCATGG	1 cut(s)	175
NdeII	GATC	5 cut(s)	348, 376, 436, 496, 556
NheI	GCTAGC	1 cut(s)	878
NlaIII	CATG	3 cut(s)	179, 197, 1122
NlaIV	GGNNCC	3 cut(s)	99, 253, 350
NmuCI	GTSAC	2 cut(s)	717, 1082
PaeR7I	CTCGAG	1 cut(s)	84
PceI	AGGCCT	2 cut(s)	670, 730
PciSI	GCTCTTC	2 cut(s)	778, 898
PctI	GAATGC	1 cut(s)	339
PkrI	GCNGC	1 cut(s)	405
PleI	GAGTC	2 cut(s)	299, 1147
PpsI	GAGTC	2 cut(s)	299, 1147
Psp6I	CCWGG	4 cut(s)	636, 650, 696, 896
PspGI	CCWGG	4 cut(s)	636, 650, 696, 896
PspN4I	GGNNCC	3 cut(s)	99, 253, 350
PspPI	GGNCC	2 cut(s)	677, 737
PsuI	RGATCY	4 cut(s)	348, 376, 436, 556
RsaI	GTAC	3 cut(s)	5, 169, 1170
RsaNI	GTAC	3 cut(s)	4, 168, 1169
RseI	CAYNNNNRTG	1 cut(s)	138
SapI	GCTCTTC	2 cut(s)	778, 898
SaqAI	TTAA	1 cut(s)	423
SatI	GCNGC	1 cut(s)	404
Sau3AI	GATC	5 cut(s)	348, 376, 436, 496, 556
Sau96I	GGNCC	2 cut(s)	677, 737
SchI	GAGTC	2 cut(s)	299, 1148
ScrFI	CCNGG	5 cut(s)	638, 652, 698, 712, 898
SduI	GDGCHC	2 cut(s)	863, 1126
SfaNI	GCATC	3 cut(s)	157, 862, 1093
SfcI	CTRYAG	2 cut(s)	1071, 1096
Sfr274I	CTCGAG	1 cut(s)	84
SinI	GGWCC	2 cut(s)	677, 737
SlaI	CTCGAG	1 cut(s)	84
SmiMI	CAYNNNNRTG	1 cut(s)	138
SmlI	CTYRAG	1 cut(s)	84
SmoI	CTYRAG	1 cut(s)	84
Sse9I	AATT	2 cut(s)	328, 963
SseBI	AGGCCT	2 cut(s)	670, 730
SspMI	CTAG	2 cut(s)	753, 879
StuI	AGGCCT	2 cut(s)	670, 730
StyD4I	CCNGG	5 cut(s)	636, 650, 696, 710, 896
StyI	CCWWGG	2 cut(s)	175, 757
TaaI	ACNGT	7 cut(s)	119, 277, 1055, 1075, 1100, 1168, 1173
TaiI	ACGT	1 cut(s)	1112
TaqI	TCGA	3 cut(s)	85, 499, 1014
TasI	AATT	2 cut(s)	328, 963
TatI	WGTACW	1 cut(s)	3
Tru1I	TTAA	1 cut(s)	423
Tru9I	TTAA	1 cut(s)	423
TscAI	CASTG	4 cut(s)	447, 937, 1087, 1105
TseFI	GTSAC	2 cut(s)	717, 1082
TseI	GCWGC	1 cut(s)	403
Tsp45I	GTSAC	2 cut(s)	717, 1082
TspDTI	ATGAA	3 cut(s)	156, 210, 900
TspGWI	ACGGA	2 cut(s)	215, 846
TspRI	CASTG	4 cut(s)	447, 937, 1087, 1105
VpaK11BI	GGWCC	2 cut(s)	677, 737
XagI	CCTNNNNNAGG	3 cut(s)	756, 781, 831
XhoI	CTCGAG	1 cut(s)	84
XspI	CTAG	2 cut(s)	753, 879

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.