Prupe.7G171900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0006081
Physical Location & Seq
Reverse (-)
17315498 .. 17319338
3841 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G171900.1

Sequence Viewer

Length: 1260 bp
ATGTCTCGGTGCTTTCCGTATCCCTCTCCTCGATACGTGAAGAAGGGGATCAACGATGAGGCCCTAATCGAATCGATTAAGCTCCAAAGAGAAGATGGAAAGGCCGAGAAAGAAAAGAAGAGAGAGAAAAAACGAGAGAAGAAAGAAAAGAAGGCTAGAGAAAATGGGGAGCTTGAAAATAAGAAGCACGGTCATAAAAAAAGGCACAAAGATGAAAGGCATCAAGAAGACGAGAAAGGTAGAGACCATGGAAAGAAAAGAAAGCATGAAATAGAAAACCTTGACAAGAGTACCCTTACTGAAGAGCACGAACATCCAGTTGGTTCCCAGAATTCTTCTGATAGCACTGTTGACAGCAACAAAAGGCCGAAGCAGAAATCGTACCCTGATGGCATGCATAATTCTGCAAGCATTTTCCGGATCCGGTTGCCTCTCCAAAGGCACAAAGATCCTGAAGTGCTACTCAGAGAGGAACAACCTTGCCAGTTGCCTATTCAGAAGCACAAAGATCCACAAATGCTACCCAGCCAAGAACAACCTTCCCGGTTGTCTCTTCAAAGGCACAAAGATCCACAAGTGCTTCCCAGCCAAGAACAGCCTTCCCGTCTGTCTCTCCAAAGGCACAAAGATCCACAAGTGCTTCCAAGCCAAGAACAGCCTTCTCAGTTGTCTCTCCAAAGGCATAAAGATCCACAAGTGCTTCCAAGCCAAGAACAGCCTTACCGACTGTCTCTCCAAAGGCACACAGGTCCACAAATGCTACCCAGCCAACAACAGCCTTCCCGGTTGTCTCTCCAAAGGCACAAAGATCCGCAAGTGCTACCCAGCCAAGAACAGCCTTGCTCTGCCTCGGGAAGGACTGATAATGCCTTTGTACAAGGAATGCATGAAGCTGCTCCTAGACAAGGCAGAGATGAGGGACAACATCGCTGCTCTACTTTTGGAAATTCTGGCAAAGAAGTCCCTGTCAGACTTGGTAAAGAAAAGCTCCGAGCAACTGGTAGTGCTTCACTTTCTATAACATCGAAATACACAGAGCTAATTGAAAACTGGGATCAACATCCTTTGTTGCAAAGCTTTCCCATGGATGTTGATGATCAGGGATGGTTGTTTGAGACAAAGCAGAACCGGAGCTGCATGGCTGATGAACGAATATTTGTGAGTGGCAGCTTGAGCTATGGAGACTCAGCGTCTTGGCCATGTGCTCGCGAGTTGCCCGAGGCCGATATATACACTTTGCCCTTTACAGTACCGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

420

Amino Acids

48.34

Weight (kDa)

9.14

Isoelectric Point (pI)

75.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1209
AccIII TCCGGA 1 cut(s) 417
AciI CCGC 1 cut(s) 812
AcoI YGGCCR 1 cut(s) 1196
AcsI RAATTY 2 cut(s) 331, 946
AcuI CTGAAG 2 cut(s) 321, 474
AfaI GTAC 4 cut(s) 292, 383, 876, 1251
AfiI CCNNNNNNNGG 2 cut(s) 855, 905
AgsI TTSAA 3 cut(s) 176, 557, 1046
AhdI GACNNNNNGTC 1 cut(s) 1189
AjuI GAANNNNNNNTTGG 2 cut(s) 303, 335
AluBI AGCT 9 cut(s) 82, 172, 893, 988, 1039, 1077, 1134, 1170, 1176
AluI AGCT 9 cut(s) 82, 172, 893, 988, 1039, 1077, 1134, 1170, 1176
Alw21I GWGCWC 2 cut(s) 309, 1207
Alw26I GTCTC 9 cut(s) 9, 237, 555, 615, 675, 735, 795, 1109, 1176
Ama87I CYCGRG 2 cut(s) 850, 1217
Aor13HI TCCGGA 1 cut(s) 417
AoxI GGCC 5 cut(s) 60, 102, 365, 1196, 1221
ApeKI GCWGC 4 cut(s) 893, 930, 1134, 1167
ApoI RAATTY 2 cut(s) 331, 946
AspS9I GGNCC 2 cut(s) 61, 749
AsuC2I CCSGG 2 cut(s) 544, 784
AvaI CYCGRG 2 cut(s) 850, 1217
AvaII GGWCC 1 cut(s) 749
BaeI ACNNNNGTAYC 2 cut(s) 274, 307
BalI TGGCCA 1 cut(s) 1198
BamHI GGATCC 1 cut(s) 420
BbsI GAAGAC 1 cut(s) 234
Bbv12I GWGCWC 2 cut(s) 309, 1207
BbvI GCAGC 4 cut(s) 880, 917, 1121, 1179
BccI CCATC 3 cut(s) 89, 383, 1098
BciVI GTATCC 1 cut(s) 30
BclI TGATCA 1 cut(s) 1096
BcnI CCSGG 2 cut(s) 544, 784
BcoDI GTCTC 9 cut(s) 9, 237, 555, 615, 675, 735, 795, 1109, 1176
BfaI CTAG 2 cut(s) 156, 900
BfuI GTATCC 1 cut(s) 30
BisI GCNGC 4 cut(s) 894, 931, 1135, 1168
BlsI GCNGC 4 cut(s) 895, 932, 1136, 1169
Bme1390I CCNGG 2 cut(s) 544, 784
Bme18I GGWCC 1 cut(s) 749
BmeRI GACNNNNNGTC 1 cut(s) 1189
BmeT110I CYCGRG 2 cut(s) 850, 1217
BmgT120I GGNCC 2 cut(s) 61, 749
BmiI GGNNCC 2 cut(s) 325, 422
BmrFI CCNGG 2 cut(s) 544, 784
BmrI ACTGGG 1 cut(s) 1060
BmsI GCATC 1 cut(s) 229
BmuI ACTGGG 1 cut(s) 1060
BpiI GAAGAC 1 cut(s) 234
BpuEI CTTGAG 1 cut(s) 1192
BpuMI CCSGG 2 cut(s) 544, 784
Bsa29I ATCGAT 1 cut(s) 74
BsaAI YACGTR 1 cut(s) 37
BsaBI GATNNNNATC 1 cut(s) 1059
BsaI GGTCTC 1 cut(s) 237
BsaJI CCNNGG 4 cut(s) 247, 849, 1083, 1218
BsaWI WCCGGW 3 cut(s) 417, 423, 1128
BsaXI ACNNNNNCTCC 2 cut(s) 717, 747
Bsc4I CCNNNNNNNGG 2 cut(s) 855, 905
Bse1I ACTGG 4 cut(s) 317, 484, 1003, 1055
Bse8I GATNNNNATC 1 cut(s) 1059
BseAI TCCGGA 1 cut(s) 417
BseCI ATCGAT 1 cut(s) 74
BseDI CCNNGG 4 cut(s) 247, 849, 1083, 1218
BseGI GGATG 4 cut(s) 313, 1060, 1093, 1109
BseJI GATNNNNATC 1 cut(s) 1059
BseLI CCNNNNNNNGG 2 cut(s) 855, 905
BseMII CTCAG 3 cut(s) 478, 677, 1200
BseNI ACTGG 4 cut(s) 317, 484, 1003, 1055
BseRI GAGGAG 1 cut(s) 18
BseXI GCAGC 4 cut(s) 880, 917, 1121, 1179
BseYI CCCAGC 4 cut(s) 524, 584, 764, 824
Bsh1236I CGCG 1 cut(s) 1209
BshFI GGCC 5 cut(s) 62, 104, 367, 1198, 1223
BshVI ATCGAT 1 cut(s) 74
BsiHKAI GWGCWC 2 cut(s) 309, 1207
BsiHKCI CYCGRG 2 cut(s) 850, 1217
BsiSI CCGG 5 cut(s) 418, 424, 544, 784, 1129
BslFI GGGAC 2 cut(s) 933, 947
BslI CCNNNNNNNGG 2 cut(s) 855, 905
BsmAI GTCTC 9 cut(s) 9, 237, 555, 615, 675, 735, 795, 1109, 1176
BsmFI GGGAC 2 cut(s) 933, 947
BsmI GAATGC 1 cut(s) 888
BsnI GGCC 5 cut(s) 62, 104, 367, 1198, 1223
Bso31I GGTCTC 1 cut(s) 237
BsoBI CYCGRG 2 cut(s) 850, 1217
Bsp1286I GDGCHC 2 cut(s) 309, 1207
Bsp13I TCCGGA 1 cut(s) 417
Bsp1407I TGTACA 1 cut(s) 874
Bsp19I CCATGG 2 cut(s) 247, 1083
Bsp68I TCGCGA 1 cut(s) 1209
BspACI CCGC 1 cut(s) 812
BspANI GGCC 5 cut(s) 62, 104, 367, 1198, 1223
BspCNI CTCAG 3 cut(s) 477, 676, 1199
BspDI ATCGAT 1 cut(s) 74
BspEI TCCGGA 1 cut(s) 417
BspFNI CGCG 1 cut(s) 1209
BspLI GGNNCC 2 cut(s) 325, 422
BspQI GCTCTTC 1 cut(s) 297
BspTNI GGTCTC 1 cut(s) 237
BsrGI TGTACA 1 cut(s) 874
BsrI ACTGG 4 cut(s) 317, 484, 1003, 1055
BssECI CCNNGG 4 cut(s) 247, 849, 1083, 1218
BssT1I CCWWGG 2 cut(s) 247, 1083
Bst4CI ACNGT 5 cut(s) 191, 349, 729, 1249, 1254
Bst6I CTCTTC 3 cut(s) 113, 297, 558
BstAUI TGTACA 1 cut(s) 874
BstBAI YACGTR 1 cut(s) 37
BstC8I GCNNGC 3 cut(s) 395, 409, 1207
BstDEI CTNAG 3 cut(s) 464, 663, 1186
BstDSI CCRYGG 2 cut(s) 247, 1083
BstENI CCTNNNNNAGG 2 cut(s) 853, 903
BstF5I GGATG 4 cut(s) 313, 1060, 1093, 1109
BstFNI CGCG 1 cut(s) 1209
BstMAI GTCTC 9 cut(s) 9, 237, 555, 615, 675, 735, 795, 1109, 1176
BstMWI GCNNNNNNNGC 1 cut(s) 1173
BstNSI RCATGY 1 cut(s) 397
BstSCI CCNGG 2 cut(s) 542, 782
BstUI CGCG 1 cut(s) 1209
BstV1I GCAGC 4 cut(s) 880, 917, 1121, 1179
BstV2I GAAGAC 1 cut(s) 234
BstX2I RGATCY 7 cut(s) 420, 448, 508, 568, 628, 688, 808
BstYI RGATCY 7 cut(s) 420, 448, 508, 568, 628, 688, 808
Bsu15I ATCGAT 1 cut(s) 74
BsuI GTATCC 1 cut(s) 30
BsuRI GGCC 5 cut(s) 62, 104, 367, 1198, 1223
BsuTUI ATCGAT 1 cut(s) 74
BtgI CCRYGG 2 cut(s) 247, 1083
BtgZI GCGATG 1 cut(s) 911
BtsCI GGATG 4 cut(s) 313, 1060, 1093, 1109
BtsIMutI CAGTG 1 cut(s) 345
BtuMI TCGCGA 1 cut(s) 1209
Cac8I GCNNGC 3 cut(s) 395, 409, 1207
Cfr13I GGNCC 2 cut(s) 61, 749
ClaI ATCGAT 1 cut(s) 74
CseI GACGC 1 cut(s) 1179
Csp6I GTAC 4 cut(s) 291, 382, 875, 1250
CviAII CATG 7 cut(s) 248, 266, 394, 887, 1084, 1138, 1200
CviQI GTAC 4 cut(s) 291, 382, 875, 1250
DdeI CTNAG 3 cut(s) 464, 663, 1186
DriI GACNNNNNGTC 1 cut(s) 1189
EaeI YGGCCR 1 cut(s) 1196
Eam1104I CTCTTC 3 cut(s) 113, 297, 558
Eam1105I GACNNNNNGTC 1 cut(s) 1189
EarI CTCTTC 3 cut(s) 113, 297, 558
Eco130I CCWWGG 2 cut(s) 247, 1083
Eco31I GGTCTC 1 cut(s) 237
Eco47I GGWCC 1 cut(s) 749
Eco57I CTGAAG 2 cut(s) 321, 474
Eco88I CYCGRG 2 cut(s) 850, 1217
EcoNI CCTNNNNNAGG 2 cut(s) 853, 903
EcoO109I RGGNCCY 1 cut(s) 61
EcoRI GAATTC 1 cut(s) 331
EcoT14I CCWWGG 2 cut(s) 247, 1083
EcoT22I ATGCAT 2 cut(s) 399, 888
ErhI CCWWGG 2 cut(s) 247, 1083
FaeI CATG 7 cut(s) 251, 269, 397, 890, 1087, 1141, 1203
FaqI GGGAC 2 cut(s) 933, 947
FatI CATG 7 cut(s) 247, 265, 393, 886, 1083, 1137, 1199
FbaI TGATCA 1 cut(s) 1096
Fnu4HI GCNGC 4 cut(s) 894, 931, 1135, 1168
FokI GGATG 4 cut(s) 300, 1047, 1100, 1116
Fsp4HI GCNGC 4 cut(s) 894, 931, 1135, 1168
FspBI CTAG 2 cut(s) 156, 900
GluI GCNGC 4 cut(s) 894, 931, 1135, 1168
GsaI CCCAGC 4 cut(s) 528, 588, 768, 828
HaeIII GGCC 5 cut(s) 62, 104, 367, 1198, 1223
HapII CCGG 5 cut(s) 418, 424, 544, 784, 1129
HgaI GACGC 1 cut(s) 1179
Hin1II CATG 7 cut(s) 251, 269, 397, 890, 1087, 1141, 1203
HincII GTYRAC 1 cut(s) 352
HindII GTYRAC 1 cut(s) 352
HindIII AAGCTT 1 cut(s) 1075
HinfI GANTC 2 cut(s) 71, 1184
HpaII CCGG 5 cut(s) 418, 424, 544, 784, 1129
Hpy166II GTNNAC 2 cut(s) 352, 752
Hpy188I TCNGA 6 cut(s) 340, 467, 498, 971, 992, 1259
Hpy188III TCNNGA 5 cut(s) 224, 418, 452, 852, 1208
Hpy8I GTNNAC 2 cut(s) 352, 752
HpyAV CCTTC 7 cut(s) 37, 145, 549, 609, 669, 789, 849
HpyCH4III ACNGT 5 cut(s) 191, 349, 729, 1249, 1254
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 5 cut(s) 397, 407, 886, 1072, 1137
HpyF10VI GCNNNNNNNGC 1 cut(s) 1173
HpyF3I CTNAG 3 cut(s) 464, 663, 1186
HpySE526I ACGT 1 cut(s) 36
Hsp92II CATG 7 cut(s) 251, 269, 397, 890, 1087, 1141, 1203
Kpn2I TCCGGA 1 cut(s) 417
Ksp22I TGATCA 1 cut(s) 1096
LguI GCTCTTC 1 cut(s) 297
LmnI GCTCC 5 cut(s) 87, 169, 901, 993, 1131
Lsp1109I GCAGC 4 cut(s) 880, 917, 1121, 1179
LweI GCATC 1 cut(s) 229
MaeI CTAG 2 cut(s) 156, 900
MaeII ACGT 1 cut(s) 36
MboII GAAGA 8 cut(s) 52, 104, 130, 151, 239, 314, 327, 545
MflI RGATCY 7 cut(s) 420, 448, 508, 568, 628, 688, 808
MhlI GDGCHC 2 cut(s) 309, 1207
MlsI TGGCCA 1 cut(s) 1198
MluCI AATT 4 cut(s) 331, 400, 946, 1041
MluNI TGGCCA 1 cut(s) 1198
MlyI GAGTC 1 cut(s) 1178
MnlI CCTC 8 cut(s) 34, 39, 52, 441, 463, 859, 910, 1213
Mox20I TGGCCA 1 cut(s) 1198
Mph1103I ATGCAT 2 cut(s) 399, 888
MroI TCCGGA 1 cut(s) 417
MscI TGGCCA 1 cut(s) 1198
MseI TTAA 1 cut(s) 78
MslI CAYNNNNRTG 1 cut(s) 210
Msp20I TGGCCA 1 cut(s) 1198
MspI CCGG 5 cut(s) 418, 424, 544, 784, 1129
MspR9I CCNGG 2 cut(s) 544, 784
Mva1269I GAATGC 1 cut(s) 888
MvnI CGCG 1 cut(s) 1209
MwoI GCNNNNNNNGC 1 cut(s) 1173
NciI CCSGG 2 cut(s) 544, 784
NcoI CCATGG 2 cut(s) 247, 1083
NlaIII CATG 7 cut(s) 251, 269, 397, 890, 1087, 1141, 1203
NlaIV GGNNCC 2 cut(s) 325, 422
NmeAIII GCCGAG 1 cut(s) 130
NruI TCGCGA 1 cut(s) 1209
NsiI ATGCAT 2 cut(s) 399, 888
NspI RCATGY 1 cut(s) 397
PaeI GCATGC 1 cut(s) 397
PciSI GCTCTTC 1 cut(s) 297
PctI GAATGC 1 cut(s) 888
PfeI GAWTC 1 cut(s) 71
PkrI GCNGC 4 cut(s) 895, 932, 1136, 1169
PleI GAGTC 1 cut(s) 1178
PpsI GAGTC 1 cut(s) 1178
Ppu21I YACGTR 1 cut(s) 37
PspFI CCCAGC 4 cut(s) 524, 584, 764, 824
PspN4I GGNNCC 2 cut(s) 325, 422
PspPI GGNCC 2 cut(s) 61, 749
PsuI RGATCY 7 cut(s) 420, 448, 508, 568, 628, 688, 808
RruI TCGCGA 1 cut(s) 1209
RsaI GTAC 4 cut(s) 292, 383, 876, 1251
RsaNI GTAC 4 cut(s) 291, 382, 875, 1250
RseI CAYNNNNRTG 1 cut(s) 210
SapI GCTCTTC 1 cut(s) 297
SaqAI TTAA 1 cut(s) 78
SatI GCNGC 4 cut(s) 894, 931, 1135, 1168
Sau96I GGNCC 2 cut(s) 61, 749
SchI GAGTC 1 cut(s) 1178
ScrFI CCNGG 2 cut(s) 544, 784
SduI GDGCHC 2 cut(s) 309, 1207
SfaNI GCATC 1 cut(s) 229
SinI GGWCC 1 cut(s) 749
SmiMI CAYNNNNRTG 1 cut(s) 210
SmlI CTYRAG 1 cut(s) 1171
SmoI CTYRAG 1 cut(s) 1171
SphI GCATGC 1 cut(s) 397
Sse9I AATT 4 cut(s) 331, 400, 946, 1041
SsiI CCGC 1 cut(s) 812
SspI AATATT 1 cut(s) 1155
SspMI CTAG 2 cut(s) 156, 900
StyD4I CCNGG 2 cut(s) 542, 782
StyI CCWWGG 2 cut(s) 247, 1083
TaaI ACNGT 5 cut(s) 191, 349, 729, 1249, 1254
TaiI ACGT 1 cut(s) 39
TaqI TCGA 4 cut(s) 31, 69, 74, 1025
TasI AATT 4 cut(s) 331, 400, 946, 1041
TatI WGTACW 1 cut(s) 874
TfiI GAWTC 1 cut(s) 71
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TscAI CASTG 1 cut(s) 352
TseI GCWGC 4 cut(s) 893, 930, 1134, 1167
TspDTI ATGAA 4 cut(s) 228, 282, 903, 1161
TspGWI ACGGA 1 cut(s) 6
TspRI CASTG 1 cut(s) 352
VpaK11BI GGWCC 1 cut(s) 749
XagI CCTNNNNNAGG 2 cut(s) 853, 903
XapI RAATTY 2 cut(s) 331, 946
XceI RCATGY 1 cut(s) 397
XcmI CCANNNNNNNNNTGG 1 cut(s) 92
XspI CTAG 2 cut(s) 156, 900
Zsp2I ATGCAT 2 cut(s) 399, 888
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.