Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0006081

Physical Location & Seq

Genomic Coordinates Forward (+)

11333051 .. 11336765

Gene Structure 3715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG124800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGAGTACCCTAACGGAAGAGCATCCAGTTGGTTCCCAGAATTCTTCTGACAGTACCCTTAACAGCAATAACAGCAACAAAAGGCAGAAGCAGAACTTGTCTCCTGAGTGTAGGCAAAATACCGGGAGCATTCTTCGTATCCGGTTGCCTCTCCAAAGGCACAAAGATCAAGAAGTGCTACTGAGAGAGGAATTGCCTTCCCGGTTGCCTCCCCACAGGAACAATGCTCCAGAGGAACAGCTTTTTCGGTTGCCTCTCCAAAGGACCAATGCTCCAGAAGTTTCTCCCAGAGAGAAACTGCCTAGCCGGTTGCCTCTTCAAAGAAACAAAGATTTAGCATTGTTACCCAAAGAGGAACAGCCTTGCAGGTTGCCTCTACAAAGGAACAAACATCTGGAAGTGTTACCCAAAGAGGAACAACCCTGCAGGTTGCCTCTACAAAGGAACAAACATCTGGAAGTATTGCCCAAAGAGGAACAACCCTGCAGGTTGCCTCTTAAGACACAGAAAGAACCACCAGTGCTAACTCGAGAGAAACAGTTGCCTTCTCTTAAAAGGCAAAAGGATCAAGATGTTCTACCCAAAGAGAAAAAGACTTGCCTGGTGTCTCTCCAAAGGACCAAGGATTCAGAAGTATTACCCAGGGAGAAACAACAGCCTAGCCAGCTACCTCTCCAAGCGAACAAAGATCGAAAAATAGTACCCAGGGAGAAACAGCTTAGCCAGTTGCCTCTCCAAAGGAGCAAGGATCCAGCAGTGCTATCTAGAGAGGAACAGCCCAGCCTGTTGCTTCTCCAAAAGCAGAAAGTTCCACAAGTGCTGCTCAGAGAAGAACAGCCGTGTTCTGTCTCTGGAAGGACTGCTGATGCCTCTGTTCAAGGTAGGTGTGAACCTGCTCCTGTACTTGGAAGTGATGAGGGAGAAAAACCCTGTTCTACTTCTGGAATTGAGGGCAAAGAAAACCGAAAAAGCAAGCGAAGAGCATCACAATACATAGAGCTATTTGAGAAATGGGTTGAGCCTCCTCTTTTATTGAGTTTACCACCCACGGATATTGATGATGATCAGGGATGGTTGCTTAAGACGAATAAGAACCCAAACCGTGGGGTTGAGAAATGTGTTGCTGCCAGTGACAGCTTGAGCTGTGGAGACTCGGTGTCTTGGCCACGTGCTCGCCTCTTGCCTGAGGTTGATGTATTTGCTTTGCCATATACCGTACCATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

408

Amino Acids

46.58

Weight (kDa)

9.32

Isoelectric Point (pI)

77.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17787 AT4G35940 AT4G35940 AT4G35940 AT4G35940 AT4G35940 AT4G35940 AT4G35940 AT4G35940
fragaria_vesca	FvH4_1g11400
malus_domestica	MD02G1126500.v1.1 MD15G1242000.v1.1 MD15G1242200.v1.1
prunus_persica	Prupe.7G171900_v2.0.a1 Prupe.7G171900_v2.0.a1
pyrus_communis	pycom02g09880 pycom15g21350
rosa_chinensis	RchiOBHm_Chr2g0098961
rosa_laevigata	RLG00000016837
rosa_multiflora	Rmu_sc0000577.1_g000007
rosa_roxburghii	Rroxscaffold_2G00143540
rosa_rugosa	Rorug02G0075300
rosa_samantha	Rh2AG124800 Rh2BG128000 Rh2CG128900 Rh2DG129100
rosa_wichuraiana	Rw2G009580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	4 cut(s)	357, 417, 477, 901
AccB7I	CCANNNNNTGG	1 cut(s)	1103
AclWI	GGATC	3 cut(s)	573, 743, 756
AcoI	YGGCCR	1 cut(s)	1163
AcsI	RAATTY	1 cut(s)	40
AcvI	CACGTG	1 cut(s)	1169
AfaI	GTAC	5 cut(s)	7, 55, 702, 903, 1218
AfiI	CCNNNNNNNGG	2 cut(s)	905, 1103
AflII	CTTAAG	2 cut(s)	497, 1079
AgsI	TTSAA	2 cut(s)	320, 878
AhdI	GACNNNNNGTC	1 cut(s)	1156
AjnI	CCWGG	3 cut(s)	600, 641, 704
AluBI	AGCT	6 cut(s)	241, 667, 718, 1000, 1137, 1143
AluI	AGCT	6 cut(s)	241, 667, 718, 1000, 1137, 1143
Alw21I	GWGCWC	1 cut(s)	1174
Alw26I	GTCTC	4 cut(s)	105, 612, 853, 1143
AlwI	GGATC	3 cut(s)	573, 743, 756
Ama87I	CYCGRG	1 cut(s)	528
AoxI	GGCC	1 cut(s)	1163
ApeKI	GCWGC	2 cut(s)	820, 1124
ApoI	RAATTY	1 cut(s)	40
AspS9I	GGNCC	2 cut(s)	264, 618
AsuC2I	CCSGG	2 cut(s)	124, 202
AvaI	CYCGRG	1 cut(s)	528
AvaII	GGWCC	2 cut(s)	264, 618
AxyI	CCTNAGG	1 cut(s)	1185
BalI	TGGCCA	1 cut(s)	1165
BamHI	GGATCC	1 cut(s)	748
BbrPI	CACGTG	1 cut(s)	1169
Bbv12I	GWGCWC	1 cut(s)	1174
BbvI	GCAGC	2 cut(s)	807, 1111
BccI	CCATC	1 cut(s)	1065
BceAI	ACGGC	1 cut(s)	823
BciT130I	CCWGG	3 cut(s)	602, 643, 706
BciVI	GTATCC	1 cut(s)	149
BclI	TGATCA	1 cut(s)	1063
BcnI	CCSGG	2 cut(s)	124, 202
BcoDI	GTCTC	4 cut(s)	105, 612, 853, 1143
BfaI	CTAG	3 cut(s)	303, 660, 765
BfmI	CTRYAG	2 cut(s)	424, 484
BfrI	CTTAAG	2 cut(s)	497, 1079
BfuAI	ACCTGC	4 cut(s)	357, 417, 477, 901
BfuI	GTATCC	1 cut(s)	149
BisI	GCNGC	2 cut(s)	821, 1125
BlpI	GCTNAGC	1 cut(s)	719
BlsI	GCNGC	2 cut(s)	822, 1126
Bme1390I	CCNGG	5 cut(s)	124, 202, 602, 643, 706
Bme18I	GGWCC	2 cut(s)	264, 618
BmeRI	GACNNNNNGTC	1 cut(s)	1156
BmeT110I	CYCGRG	1 cut(s)	528
BmgT120I	GGNCC	2 cut(s)	264, 618
BmiI	GGNNCC	2 cut(s)	34, 750
BmrFI	CCNGG	5 cut(s)	124, 202, 602, 643, 706
BmsI	GCATC	3 cut(s)	31, 856, 992
BpmI	CTGGAG	2 cut(s)	213, 258
Bpu1102I	GCTNAGC	1 cut(s)	719
BpuEI	CTTGAG	1 cut(s)	1159
BpuMI	CCSGG	2 cut(s)	124, 202
BsaAI	YACGTR	1 cut(s)	1169
BsaBI	GATNNNNATC	1 cut(s)	1062
BsaJI	CCNNGG	7 cut(s)	621, 641, 642, 704, 705, 1047, 1102
BsaWI	WCCGGW	1 cut(s)	141
BsaXI	ACNNNNNCTCC	4 cut(s)	256, 286, 1140, 1170
Bsc4I	CCNNNNNNNGG	2 cut(s)	905, 1103
Bse118I	RCCGGY	1 cut(s)	306
Bse1I	ACTGG	4 cut(s)	26, 518, 724, 1128
Bse21I	CCTNAGG	1 cut(s)	1185
Bse8I	GATNNNNATC	1 cut(s)	1062
BseBI	CCWGG	3 cut(s)	602, 643, 706
BseDI	CCNNGG	7 cut(s)	621, 641, 642, 704, 705, 1047, 1102
BseGI	GGATG	2 cut(s)	22, 1076
BseJI	GATNNNNATC	1 cut(s)	1062
BseLI	CCNNNNNNNGG	2 cut(s)	905, 1103
BseMII	CTCAG	4 cut(s)	96, 173, 838, 1176
BseNI	ACTGG	4 cut(s)	26, 518, 724, 1128
BseRI	GAGGAG	1 cut(s)	1014
BseXI	GCAGC	2 cut(s)	807, 1111
BseYI	CCCAGC	1 cut(s)	779
BshFI	GGCC	1 cut(s)	1165
BsiHKAI	GWGCWC	1 cut(s)	1174
BsiHKCI	CYCGRG	1 cut(s)	528
BsiSI	CCGG	4 cut(s)	123, 142, 202, 307
BslI	CCNNNNNNNGG	2 cut(s)	905, 1103
BsmAI	GTCTC	4 cut(s)	105, 612, 853, 1143
BsmI	GAATGC	1 cut(s)	129
BsnI	GGCC	1 cut(s)	1165
BsoBI	CYCGRG	1 cut(s)	528
Bsp1286I	GDGCHC	1 cut(s)	1174
Bsp143I	GATC	5 cut(s)	166, 565, 688, 748, 1063
Bsp1720I	GCTNAGC	1 cut(s)	719
BspANI	GGCC	1 cut(s)	1165
BspCNI	CTCAG	4 cut(s)	97, 174, 837, 1177
BspLI	GGNNCC	2 cut(s)	34, 750
BspMAI	CTGCAG	2 cut(s)	428, 488
BspMI	ACCTGC	4 cut(s)	357, 417, 477, 901
BspPI	GGATC	3 cut(s)	573, 743, 756
BspQI	GCTCTTC	2 cut(s)	12, 973
BspTI	CTTAAG	2 cut(s)	497, 1079
BsrFI	RCCGGY	1 cut(s)	306
BsrI	ACTGG	4 cut(s)	26, 518, 724, 1128
BssAI	RCCGGY	1 cut(s)	306
BssECI	CCNNGG	7 cut(s)	621, 641, 642, 704, 705, 1047, 1102
BssMI	GATC	5 cut(s)	166, 565, 688, 748, 1063
BssT1I	CCWWGG	1 cut(s)	621
Bst2UI	CCWGG	3 cut(s)	602, 643, 706
Bst4CI	ACNGT	4 cut(s)	53, 540, 1103, 1216
Bst6I	CTCTTC	3 cut(s)	12, 321, 973
BstAFI	CTTAAG	2 cut(s)	497, 1079
BstBAI	YACGTR	1 cut(s)	1169
BstC8I	GCNNGC	3 cut(s)	665, 974, 1174
BstDEI	CTNAG	5 cut(s)	105, 182, 719, 824, 1185
BstDSI	CCRYGG	2 cut(s)	1047, 1102
BstF5I	GGATG	2 cut(s)	22, 1076
BstKTI	GATC	5 cut(s)	169, 568, 691, 751, 1066
BstMAI	GTCTC	4 cut(s)	105, 612, 853, 1143
BstMBI	GATC	5 cut(s)	166, 565, 688, 748, 1063
BstMWI	GCNNNNNNNGC	2 cut(s)	72, 664
BstNI	CCWGG	3 cut(s)	602, 643, 706
BstSCI	CCNGG	5 cut(s)	122, 200, 600, 641, 704
BstSFI	CTRYAG	2 cut(s)	424, 484
BstV1I	GCAGC	2 cut(s)	807, 1111
BstX2I	RGATCY	1 cut(s)	748
BstYI	RGATCY	1 cut(s)	748
Bsu36I	CCTNAGG	1 cut(s)	1185
BsuI	GTATCC	1 cut(s)	149
BsuRI	GGCC	1 cut(s)	1165
BtgI	CCRYGG	2 cut(s)	1047, 1102
BtsCI	GGATG	2 cut(s)	22, 1076
BtsI	GCAGTG	1 cut(s)	762
BtsIMutI	CAGTG	3 cut(s)	525, 762, 1135
BveI	ACCTGC	4 cut(s)	357, 417, 477, 901
Cac8I	GCNNGC	3 cut(s)	665, 974, 1174
Cfr10I	RCCGGY	1 cut(s)	306
Cfr13I	GGNCC	2 cut(s)	264, 618
Csp6I	GTAC	5 cut(s)	6, 54, 701, 902, 1217
CspCI	CAANNNNNGTGG	2 cut(s)	1036, 1071
CviQI	GTAC	5 cut(s)	6, 54, 701, 902, 1217
DdeI	CTNAG	5 cut(s)	105, 182, 719, 824, 1185
DpnI	GATC	5 cut(s)	168, 567, 690, 750, 1065
DpnII	GATC	5 cut(s)	166, 565, 688, 748, 1063
DriI	GACNNNNNGTC	1 cut(s)	1156
EaeI	YGGCCR	1 cut(s)	1163
Eam1104I	CTCTTC	3 cut(s)	12, 321, 973
Eam1105I	GACNNNNNGTC	1 cut(s)	1156
EarI	CTCTTC	3 cut(s)	12, 321, 973
Eco130I	CCWWGG	1 cut(s)	621
Eco47I	GGWCC	2 cut(s)	264, 618
Eco72I	CACGTG	1 cut(s)	1169
Eco81I	CCTNAGG	1 cut(s)	1185
Eco88I	CYCGRG	1 cut(s)	528
EcoRI	GAATTC	1 cut(s)	40
EcoRII	CCWGG	3 cut(s)	600, 641, 704
EcoT14I	CCWWGG	1 cut(s)	621
ErhI	CCWWGG	1 cut(s)	621
FaiI	YATR	3 cut(s)	995, 1210, 1212
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FbaI	TGATCA	1 cut(s)	1063
Fnu4HI	GCNGC	2 cut(s)	821, 1125
FokI	GGATG	2 cut(s)	9, 1083
Fsp4HI	GCNGC	2 cut(s)	821, 1125
FspBI	CTAG	3 cut(s)	303, 660, 765
GluI	GCNGC	2 cut(s)	821, 1125
GsaI	CCCAGC	1 cut(s)	783
GsuI	CTGGAG	2 cut(s)	213, 258
HaeIII	GGCC	1 cut(s)	1165
HapII	CCGG	4 cut(s)	123, 142, 202, 307
HinfI	GANTC	2 cut(s)	626, 1151
HpaII	CCGG	4 cut(s)	123, 142, 202, 307
Hpy166II	GTNNAC	2 cut(s)	890, 1040
Hpy188I	TCNGA	3 cut(s)	49, 631, 827
Hpy8I	GTNNAC	2 cut(s)	890, 1040
HpyAV	CCTTC	3 cut(s)	207, 555, 849
HpyCH4III	ACNGT	4 cut(s)	53, 540, 1103, 1216
HpyCH4IV	ACGT	1 cut(s)	1168
HpyCH4V	TGCA	3 cut(s)	366, 426, 486
HpyF10VI	GCNNNNNNNGC	2 cut(s)	72, 664
HpyF3I	CTNAG	5 cut(s)	105, 182, 719, 824, 1185
HpySE526I	ACGT	1 cut(s)	1168
Ksp22I	TGATCA	1 cut(s)	1063
Kzo9I	GATC	5 cut(s)	166, 565, 688, 748, 1063
LguI	GCTCTTC	2 cut(s)	12, 973
LmnI	GCTCC	5 cut(s)	126, 232, 277, 741, 901
Lsp1109I	GCAGC	2 cut(s)	807, 1111
LweI	GCATC	3 cut(s)	31, 856, 992
MaeI	CTAG	3 cut(s)	303, 660, 765
MaeII	ACGT	1 cut(s)	1168
MaeIII	GTNAC	3 cut(s)	342, 402, 1130
MalI	GATC	5 cut(s)	168, 567, 690, 750, 1065
MboI	GATC	5 cut(s)	166, 565, 688, 748, 1063
MboII	GAAGA	6 cut(s)	29, 36, 125, 308, 842, 990
MflI	RGATCY	1 cut(s)	748
MhlI	GDGCHC	1 cut(s)	1174
MlsI	TGGCCA	1 cut(s)	1165
MluCI	AATT	3 cut(s)	40, 191, 945
MluNI	TGGCCA	1 cut(s)	1165
MlyI	GAGTC	1 cut(s)	1145
Mox20I	TGGCCA	1 cut(s)	1165
MscI	TGGCCA	1 cut(s)	1165
MseI	TTAA	5 cut(s)	60, 498, 552, 1080, 1225
Msp20I	TGGCCA	1 cut(s)	1165
MspCI	CTTAAG	2 cut(s)	497, 1079
MspI	CCGG	4 cut(s)	123, 142, 202, 307
MspR9I	CCNGG	5 cut(s)	124, 202, 602, 643, 706
Mva1269I	GAATGC	1 cut(s)	129
MvaI	CCWGG	3 cut(s)	602, 643, 706
MwoI	GCNNNNNNNGC	2 cut(s)	72, 664
NciI	CCSGG	2 cut(s)	124, 202
NdeII	GATC	5 cut(s)	166, 565, 688, 748, 1063
NlaIV	GGNNCC	2 cut(s)	34, 750
NmuCI	GTSAC	1 cut(s)	1130
PaeR7I	CTCGAG	1 cut(s)	528
PasI	CCCWGGG	2 cut(s)	642, 705
PciSI	GCTCTTC	2 cut(s)	12, 973
PctI	GAATGC	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	626
PflMI	CCANNNNNTGG	1 cut(s)	1103
PkrI	GCNGC	2 cut(s)	822, 1126
PleI	GAGTC	1 cut(s)	1145
PmaCI	CACGTG	1 cut(s)	1169
PmlI	CACGTG	1 cut(s)	1169
PpsI	GAGTC	1 cut(s)	1145
Ppu21I	YACGTR	1 cut(s)	1169
Psp6I	CCWGG	3 cut(s)	600, 641, 704
PspCI	CACGTG	1 cut(s)	1169
PspFI	CCCAGC	1 cut(s)	779
PspGI	CCWGG	3 cut(s)	600, 641, 704
PspN4I	GGNNCC	2 cut(s)	34, 750
PspPI	GGNCC	2 cut(s)	264, 618
PstI	CTGCAG	2 cut(s)	428, 488
PsuI	RGATCY	1 cut(s)	748
RsaI	GTAC	5 cut(s)	7, 55, 702, 903, 1218
RsaNI	GTAC	5 cut(s)	6, 54, 701, 902, 1217
SapI	GCTCTTC	2 cut(s)	12, 973
SaqAI	TTAA	5 cut(s)	60, 498, 552, 1080, 1225
SatI	GCNGC	2 cut(s)	821, 1125
Sau3AI	GATC	5 cut(s)	166, 565, 688, 748, 1063
Sau96I	GGNCC	2 cut(s)	264, 618
SbfI	CCTGCAGG	2 cut(s)	428, 488
SchI	GAGTC	1 cut(s)	1145
ScrFI	CCNGG	5 cut(s)	124, 202, 602, 643, 706
SdaI	CCTGCAGG	2 cut(s)	428, 488
SduI	GDGCHC	1 cut(s)	1174
SfaNI	GCATC	3 cut(s)	31, 856, 992
SfcI	CTRYAG	2 cut(s)	424, 484
Sfr274I	CTCGAG	1 cut(s)	528
SinI	GGWCC	2 cut(s)	264, 618
SlaI	CTCGAG	1 cut(s)	528
SmlI	CTYRAG	4 cut(s)	497, 528, 1079, 1138
SmoI	CTYRAG	4 cut(s)	497, 528, 1079, 1138
Sse8387I	CCTGCAGG	2 cut(s)	428, 488
Sse9I	AATT	3 cut(s)	40, 191, 945
SspMI	CTAG	3 cut(s)	303, 660, 765
StyD4I	CCNGG	5 cut(s)	122, 200, 600, 641, 704
StyI	CCWWGG	1 cut(s)	621
TaaI	ACNGT	4 cut(s)	53, 540, 1103, 1216
TaiI	ACGT	1 cut(s)	1171
TaqI	TCGA	2 cut(s)	529, 691
TasI	AATT	3 cut(s)	40, 191, 945
TatI	WGTACW	1 cut(s)	901
TfiI	GAWTC	1 cut(s)	626
Tru1I	TTAA	5 cut(s)	60, 498, 552, 1080, 1225
Tru9I	TTAA	5 cut(s)	60, 498, 552, 1080, 1225
TscAI	CASTG	3 cut(s)	525, 762, 1135
TseFI	GTSAC	1 cut(s)	1130
TseI	GCWGC	2 cut(s)	820, 1124
Tsp45I	GTSAC	1 cut(s)	1130
TspGWI	ACGGA	2 cut(s)	29, 1064
TspRI	CASTG	3 cut(s)	525, 762, 1135
Van91I	CCANNNNNTGG	1 cut(s)	1103
Vha464I	CTTAAG	2 cut(s)	497, 1079
VpaK11BI	GGWCC	2 cut(s)	264, 618
XapI	RAATTY	1 cut(s)	40
XbaI	TCTAGA	1 cut(s)	764
XhoI	CTCGAG	1 cut(s)	528
XspI	CTAG	3 cut(s)	303, 660, 765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.