Rorug02G0075300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0006081
Physical Location & Seq
Reverse (-)
5963376 .. 5966720
3345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0075300.1

Sequence Viewer

Length: 1518 bp
ATGGAACCAAGAGGCCTAGGGTACAGGTTGGGTGGTTTCGTTACGGTGGTGGTGGTGCTTGTTTCGGCATTGGTCATTAATGTTTCCGGTAACTTGGTTTTCCCGGTGAGCCATAAGTTTAATGGTAGACACGGAGCGTCGTTGAGTGAACTCAAAGCCCATGATCATCGCCGTCATGCTAGATTTCTCGGGGCCACCCAGAATGCTGTGGATATGGTTTTGGGCGGCAGCACTGAGCAAACTGGGCTCTACTTCACTAAACTTGGGATTGGGAATCCTTCACACGACTATTACTTGCAAATTGATACCGGAAGTAATCTATTTTGGGTGAGTTGCGCTGAGTGCGGCAAAGGCTGCCCTGACAGATCTGAACTCACTGGTGTAAAACTCACACTCTACGATCGAAACAGTTCTTCCACTTCAAAGGTGGTGTCTTGTGGTGATAACTTTTGCACTTCCCCATCCGTAAAATCAATCTCTGATTGCAAGCCAGACGAGAAATGCAACTACCATCTTCAATATGTAGGTAAAGATAAAACTTCCGGATACTATGTCAAGGATGATGTGCAATTTCAGAAAGCCAGCGGGAACTTTCAAACATCCTCCACTAGTGGATCTGTAATATTCGGGTGCGGGACTGAACAATCTGGCTCGATAAATAACCCCAATGGAGCACTTTCCGGGGTAATTGGTTTTGACCAGGACAATATAACCATGCTTTCACAGCTAGCGGCCGCAGGAAGGGTGAGGAATAAATTTGCACACTGCTTGGATAACACGAAACAATTGCAAGGTGGTGGAATCTGGGCTATAGGAGAAGTCGTCGAACCCAAAATGATGCACACATCACCTATCGTACCAAATCAGACTCGTTACAATATTGTGGTGGAGAAAATTGAGGTTGGAAGTGATGCCATAGAACTTCCTACTAGTGGTGGTGGTGTTTTGGATGAAACATCTGACAGCAATTCAGACCAAATTATTGCATTTTTTGATAGTGGTACAACATTTGCTCATTTACCACCAAAGTTGCGTGAACCAATAGTGAAGAAGATATTCGCTACGGAGCCTGGATTGAAATTCCTAAAAGATAATGACGGCGAGTACTCATGTTTCAAGTATTCCAAAAACATTGATGAGAAGTTTCCTATTGTCAAGTTCACTTTCAAGAATTCCGCTTCATTGTGGGTGTATCCTCATGATTATCTGTATGAAACGGAAGAGGGTGCCTGGTGTCATGGTTGGATGAAAATGATTGGGGAAGACCCCGACATTATTCTGGGAGATATGACGCTTTCGAATAAGTTAGTTGTATACGATCTTGAAAACCAGGTCCTTGGGTGGACTGATCACAACTGTTCTTCAAGCATAAAAGTGAAAGATGACAAGTCGGGGTCAGACTACTCTGTTCAGTACCACAATCTTTCTTCTTCAGATGCTTCCAGCCCAAGACTACTGATGTCATTCGTGTTATTAGTAACTGCTGCTGCTGCTATGCTGCAAATGATCTCAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

505

Amino Acids

55.15

Weight (kDa)

5.79

Isoelectric Point (pI)

39.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 84 - 272 8.9e-37 Xylanase inhibitor N-terminal
Asp PF00026 84 - 447 6.8e-18 Eukaryotic aspartyl protease
TAXi_C PF14541 292 - 449 3.5e-16 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1226
AccI GTMKAC 2 cut(s) 127, 1314
AccIII TCCGGA 1 cut(s) 542
AciI CCGC 7 cut(s) 225, 345, 585, 633, 731, 735, 1176
AclWI GGATC 1 cut(s) 622
AcoI YGGCCR 1 cut(s) 732
AcsI RAATTY 3 cut(s) 755, 1079, 1171
AcuI CTGAAG 1 cut(s) 1416
AfaI GTAC 5 cut(s) 23, 858, 1003, 1106, 1415
AfiI CCNNNNNNNGG 2 cut(s) 741, 932
AgsI TTSAA 8 cut(s) 423, 518, 596, 1078, 1117, 1168, 1325, 1365
AhlI ACTAGT 2 cut(s) 608, 929
AjnI CCWGG 4 cut(s) 699, 1069, 1229, 1329
AluBI AGCT 1 cut(s) 727
AluI AGCT 1 cut(s) 727
Alw21I GWGCWC 1 cut(s) 676
AlwI GGATC 1 cut(s) 622
Ama87I CYCGRG 1 cut(s) 188
Aor13HI TCCGGA 1 cut(s) 542
AoxI GGCC 3 cut(s) 13, 192, 732
ApeKI GCWGC 6 cut(s) 228, 354, 1484, 1487, 1490, 1498
ApoI RAATTY 3 cut(s) 755, 1079, 1171
ArsI GACNNNNNNTTYG 2 cut(s) 416, 448
AseI ATTAAT 1 cut(s) 78
Asp700I GAANNNNTTC 2 cut(s) 409, 1055
AspA2I CCTAGG 1 cut(s) 16
AspLEI GCGC 1 cut(s) 338
AspS9I GGNCC 2 cut(s) 192, 1333
AsuC2I CCSGG 2 cut(s) 104, 682
AsuHPI GGTGA 5 cut(s) 118, 340, 452, 757, 840
AsuII TTCGAA 1 cut(s) 1298
AsuNHI GCTAGC 1 cut(s) 727
AvaI CYCGRG 1 cut(s) 188
AvaII GGWCC 1 cut(s) 1333
AvrII CCTAGG 1 cut(s) 16
BanI GGYRCC 1 cut(s) 1226
BanII GRGCYC 1 cut(s) 249
BbsI GAAGAC 1 cut(s) 1269
Bbv12I GWGCWC 1 cut(s) 676
BbvI GCAGC 6 cut(s) 240, 341, 1471, 1474, 1477, 1485
BccI CCATC 2 cut(s) 469, 519
BceAI ACGGC 2 cut(s) 156, 1114
BcgI CGANNNNNNTGC 2 cut(s) 769, 803
BciT130I CCWGG 4 cut(s) 701, 1071, 1231, 1331
BciVI GTATCC 2 cut(s) 539, 1203
BclI TGATCA 2 cut(s) 163, 1348
BcnI CCSGG 2 cut(s) 104, 682
BcuI ACTAGT 2 cut(s) 608, 929
BfaI CTAG 5 cut(s) 17, 180, 609, 728, 930
BfmI CTRYAG 1 cut(s) 810
BfuI GTATCC 2 cut(s) 539, 1203
BglII AGATCT 1 cut(s) 365
BlnI CCTAGG 1 cut(s) 16
BmcAI AGTACT 1 cut(s) 1106
Bme1390I CCNGG 6 cut(s) 104, 682, 701, 1071, 1231, 1331
Bme18I GGWCC 1 cut(s) 1333
BmeT110I CYCGRG 1 cut(s) 188
BmgT120I GGNCC 2 cut(s) 192, 1333
BmiI GGNNCC 4 cut(s) 6, 193, 1068, 1228
BmrFI CCNGG 6 cut(s) 104, 682, 701, 1071, 1231, 1331
BmrI ACTGGG 1 cut(s) 252
BmsI GCATC 3 cut(s) 828, 901, 1426
BmtI GCTAGC 1 cut(s) 731
BmuI ACTGGG 1 cut(s) 252
BpiI GAAGAC 1 cut(s) 1269
Bpu14I TTCGAA 1 cut(s) 1298
BpuMI CCSGG 2 cut(s) 104, 682
BsaJI CCNNGG 3 cut(s) 16, 681, 1336
BsaWI WCCGGW 3 cut(s) 86, 308, 542
BsaXI ACNNNNNCTCC 2 cut(s) 807, 837
Bsc4I CCNNNNNNNGG 2 cut(s) 741, 932
Bse1I ACTGG 2 cut(s) 247, 382
BseAI TCCGGA 1 cut(s) 542
BseBI CCWGG 4 cut(s) 701, 1071, 1231, 1331
BseDI CCNNGG 3 cut(s) 16, 681, 1336
BseGI GGATG 5 cut(s) 461, 565, 599, 955, 1251
BseLI CCNNNNNNNGG 2 cut(s) 741, 932
BseMII CTCAG 2 cut(s) 225, 330
BseNI ACTGG 2 cut(s) 247, 382
BseX3I CGGCCG 1 cut(s) 732
BseXI GCAGC 6 cut(s) 240, 341, 1471, 1474, 1477, 1485
Bsh1285I CGRYCG 2 cut(s) 403, 735
BshFI GGCC 3 cut(s) 15, 194, 734
BshNI GGYRCC 1 cut(s) 1226
BsiEI CGRYCG 2 cut(s) 403, 735
BsiHKAI GWGCWC 1 cut(s) 676
BsiHKCI CYCGRG 1 cut(s) 188
BsiSI CCGG 5 cut(s) 87, 104, 309, 543, 681
BslFI GGGAC 1 cut(s) 649
BslI CCNNNNNNNGG 2 cut(s) 741, 932
BsmFI GGGAC 1 cut(s) 649
BsmI GAATGC 1 cut(s) 208
BsnI GGCC 3 cut(s) 15, 194, 734
BsoBI CYCGRG 1 cut(s) 188
Bsp119I TTCGAA 1 cut(s) 1298
Bsp1286I GDGCHC 2 cut(s) 249, 676
Bsp13I TCCGGA 1 cut(s) 542
Bsp143I GATC 7 cut(s) 163, 365, 400, 614, 1318, 1348, 1506
BspACI CCGC 7 cut(s) 225, 345, 585, 633, 731, 735, 1176
BspANI GGCC 3 cut(s) 15, 194, 734
BspCNI CTCAG 2 cut(s) 226, 331
BspEI TCCGGA 1 cut(s) 542
BspHI TCATGA 1 cut(s) 1198
BspLI GGNNCC 4 cut(s) 6, 193, 1068, 1228
BspOI GCTAGC 1 cut(s) 731
BspPI GGATC 1 cut(s) 622
BspT104I TTCGAA 1 cut(s) 1298
BspT107I GGYRCC 1 cut(s) 1226
BsrI ACTGG 2 cut(s) 247, 382
BssECI CCNNGG 3 cut(s) 16, 681, 1336
BssMI GATC 7 cut(s) 163, 365, 400, 614, 1318, 1348, 1506
BssNAI GTATAC 1 cut(s) 1315
BssT1I CCWWGG 2 cut(s) 16, 1336
Bst1107I GTATAC 1 cut(s) 1315
Bst2UI CCWGG 4 cut(s) 701, 1071, 1231, 1331
Bst4CI ACNGT 3 cut(s) 46, 410, 1358
Bst6I CTCTTC 1 cut(s) 1215
BstAPI GCANNNNNTGC 1 cut(s) 354
BstBI TTCGAA 1 cut(s) 1298
BstC8I GCNNGC 3 cut(s) 488, 583, 729
BstDEI CTNAG 2 cut(s) 234, 339
BstF5I GGATG 5 cut(s) 461, 565, 599, 955, 1251
BstHHI GCGC 1 cut(s) 338
BstKTI GATC 7 cut(s) 166, 368, 403, 617, 1321, 1351, 1509
BstMBI GATC 7 cut(s) 163, 365, 400, 614, 1318, 1348, 1506
BstMCI CGRYCG 2 cut(s) 403, 735
BstMWI GCNNNNNNNGC 6 cut(s) 244, 342, 351, 354, 724, 1490
BstNI CCWGG 4 cut(s) 701, 1071, 1231, 1331
BstSCI CCNGG 6 cut(s) 102, 680, 699, 1069, 1229, 1329
BstSFI CTRYAG 1 cut(s) 810
BstV1I GCAGC 6 cut(s) 240, 341, 1471, 1474, 1477, 1485
BstV2I GAAGAC 1 cut(s) 1269
BstX2I RGATCY 2 cut(s) 365, 614
BstXI CCANNNNNNTGG 1 cut(s) 1337
BstYI RGATCY 2 cut(s) 365, 614
BstZ17I GTATAC 1 cut(s) 1315
BstZI CGGCCG 1 cut(s) 732
BsuI GTATCC 2 cut(s) 539, 1203
BsuRI GGCC 3 cut(s) 15, 194, 734
BtgZI GCGATG 1 cut(s) 152
BtsCI GGATG 5 cut(s) 461, 565, 599, 955, 1251
BtsI GCAGTG 1 cut(s) 763
BtsIMutI CAGTG 3 cut(s) 231, 375, 763
Cac8I GCNNGC 3 cut(s) 488, 583, 729
CciI TCATGA 1 cut(s) 1198
CciNI GCGGCCGC 1 cut(s) 732
CfoI GCGC 1 cut(s) 338
Cfr13I GGNCC 2 cut(s) 192, 1333
CseI GACGC 2 cut(s) 126, 1300
CsiI ACCWGGT 1 cut(s) 1329
Csp6I GTAC 5 cut(s) 22, 857, 1002, 1105, 1414
CspCI CAANNNNNGTGG 2 cut(s) 1011, 1046
CviAII CATG 6 cut(s) 161, 176, 715, 1110, 1199, 1238
CviQI GTAC 5 cut(s) 22, 857, 1002, 1105, 1414
DdeI CTNAG 2 cut(s) 234, 339
DpnI GATC 7 cut(s) 165, 367, 402, 616, 1320, 1350, 1508
DpnII GATC 7 cut(s) 163, 365, 400, 614, 1318, 1348, 1506
EaeI YGGCCR 1 cut(s) 732
EagI CGGCCG 1 cut(s) 732
Eam1104I CTCTTC 1 cut(s) 1215
EarI CTCTTC 1 cut(s) 1215
EclXI CGGCCG 1 cut(s) 732
Eco130I CCWWGG 2 cut(s) 16, 1336
Eco147I AGGCCT 1 cut(s) 15
Eco24I GRGCYC 1 cut(s) 249
Eco47I GGWCC 1 cut(s) 1333
Eco52I CGGCCG 1 cut(s) 732
Eco57I CTGAAG 1 cut(s) 1416
Eco88I CYCGRG 1 cut(s) 188
EcoO109I RGGNCCY 1 cut(s) 1333
EcoRI GAATTC 1 cut(s) 1171
EcoRII CCWGG 4 cut(s) 699, 1069, 1229, 1329
EcoT14I CCWWGG 2 cut(s) 16, 1336
EcoT38I GRGCYC 1 cut(s) 249
ErhI CCWWGG 2 cut(s) 16, 1336
FaeI CATG 6 cut(s) 164, 179, 718, 1113, 1202, 1241
FaqI GGGAC 1 cut(s) 649
FatI CATG 6 cut(s) 160, 175, 714, 1109, 1198, 1237
FauI CCCGC 2 cut(s) 578, 626
FbaI TGATCA 2 cut(s) 163, 1348
FblI GTMKAC 2 cut(s) 127, 1314
FokI GGATG 5 cut(s) 448, 572, 586, 962, 1258
FriOI GRGCYC 1 cut(s) 249
FspBI CTAG 5 cut(s) 17, 180, 609, 728, 930
GlaI GCGC 1 cut(s) 337
HaeIII GGCC 3 cut(s) 15, 194, 734
HapII CCGG 5 cut(s) 87, 104, 309, 543, 681
HgaI GACGC 2 cut(s) 126, 1300
HhaI GCGC 1 cut(s) 338
Hin1II CATG 6 cut(s) 164, 179, 718, 1113, 1202, 1241
Hin6I GCGC 1 cut(s) 336
HinP1I GCGC 1 cut(s) 336
HinfI GANTC 3 cut(s) 274, 801, 868
HpaII CCGG 5 cut(s) 87, 104, 309, 543, 681
HphI GGTGA 5 cut(s) 118, 340, 452, 757, 840
Hpy166II GTNNAC 6 cut(s) 128, 149, 1037, 1161, 1315, 1344
Hpy188I TCNGA 8 cut(s) 370, 481, 576, 867, 961, 973, 1399, 1435
Hpy188III TCNNGA 4 cut(s) 543, 1168, 1199, 1322
Hpy8I GTNNAC 6 cut(s) 128, 149, 1037, 1161, 1315, 1344
Hpy99I CGWCG 2 cut(s) 142, 827
HpyAV CCTTC 2 cut(s) 288, 735
HpyCH4III ACNGT 3 cut(s) 46, 410, 1358
HpyF10VI GCNNNNNNNGC 6 cut(s) 244, 342, 351, 354, 724, 1490
HpyF3I CTNAG 2 cut(s) 234, 339
Hsp92II CATG 6 cut(s) 164, 179, 718, 1113, 1202, 1241
HspAI GCGC 1 cut(s) 336
Kpn2I TCCGGA 1 cut(s) 542
Ksp22I TGATCA 2 cut(s) 163, 1348
Kzo9I GATC 7 cut(s) 163, 365, 400, 614, 1318, 1348, 1506
LmnI GCTCC 3 cut(s) 134, 671, 1066
Lsp1109I GCAGC 6 cut(s) 240, 341, 1471, 1474, 1477, 1485
LweI GCATC 3 cut(s) 828, 901, 1426
MabI ACCWGGT 1 cut(s) 1329
MaeI CTAG 5 cut(s) 17, 180, 609, 728, 930
MaeIII GTNAC 4 cut(s) 40, 89, 872, 1477
MalI GATC 7 cut(s) 165, 367, 402, 616, 1320, 1350, 1508
MboI GATC 7 cut(s) 163, 365, 400, 614, 1318, 1348, 1506
MboII GAAGA 9 cut(s) 405, 506, 1060, 1063, 1232, 1274, 1353, 1419, 1422
MfeI CAATTG 1 cut(s) 785
MflI RGATCY 2 cut(s) 365, 614
MhlI GDGCHC 2 cut(s) 249, 676
MlyI GAGTC 1 cut(s) 862
MmeI TCCRAC 2 cut(s) 883, 1223
MnlI CCTC 6 cut(s) 5, 613, 741, 892, 1206, 1216
MroI TCCGGA 1 cut(s) 542
MroXI GAANNNNTTC 2 cut(s) 409, 1055
MseI TTAA 2 cut(s) 78, 120
MslI CAYNNNNRTG 1 cut(s) 1373
MspA1I CMGCKG 1 cut(s) 585
MspI CCGG 5 cut(s) 87, 104, 309, 543, 681
MspR9I CCNGG 6 cut(s) 104, 682, 701, 1071, 1231, 1331
MunI CAATTG 1 cut(s) 785
Mva1269I GAATGC 1 cut(s) 208
MvaI CCWGG 4 cut(s) 701, 1071, 1231, 1331
MwoI GCNNNNNNNGC 6 cut(s) 244, 342, 351, 354, 724, 1490
NciI CCSGG 2 cut(s) 104, 682
NdeII GATC 7 cut(s) 163, 365, 400, 614, 1318, 1348, 1506
NheI GCTAGC 1 cut(s) 727
NlaIII CATG 6 cut(s) 164, 179, 718, 1113, 1202, 1241
NlaIV GGNNCC 4 cut(s) 6, 193, 1068, 1228
NotI GCGGCCGC 1 cut(s) 732
NspV TTCGAA 1 cut(s) 1298
PagI TCATGA 1 cut(s) 1198
PceI AGGCCT 1 cut(s) 15
PctI GAATGC 1 cut(s) 208
PdmI GAANNNNTTC 2 cut(s) 409, 1055
PfeI GAWTC 2 cut(s) 274, 801
Ple19I CGATCG 1 cut(s) 403
PleI GAGTC 1 cut(s) 862
PpsI GAGTC 1 cut(s) 862
PpuMI RGGWCCY 1 cut(s) 1333
PshBI ATTAAT 1 cut(s) 78
Psp5II RGGWCCY 1 cut(s) 1333
Psp6I CCWGG 4 cut(s) 699, 1069, 1229, 1329
PspGI CCWGG 4 cut(s) 699, 1069, 1229, 1329
PspN4I GGNNCC 4 cut(s) 6, 193, 1068, 1228
PspPI GGNCC 2 cut(s) 192, 1333
PspPPI RGGWCCY 1 cut(s) 1333
PsuI RGATCY 2 cut(s) 365, 614
PvuI CGATCG 1 cut(s) 403
RsaI GTAC 5 cut(s) 23, 858, 1003, 1106, 1415
RsaNI GTAC 5 cut(s) 22, 857, 1002, 1105, 1414
RseI CAYNNNNRTG 1 cut(s) 1373
SaqAI TTAA 2 cut(s) 78, 120
Sau3AI GATC 7 cut(s) 163, 365, 400, 614, 1318, 1348, 1506
Sau96I GGNCC 2 cut(s) 192, 1333
ScaI AGTACT 1 cut(s) 1106
SchI GAGTC 1 cut(s) 862
ScrFI CCNGG 6 cut(s) 104, 682, 701, 1071, 1231, 1331
SduI GDGCHC 2 cut(s) 249, 676
SetI ASST 8 cut(s) 29, 429, 529, 729, 796, 853, 903, 1335
SexAI ACCWGGT 1 cut(s) 1329
SfaNI GCATC 3 cut(s) 828, 901, 1426
SfcI CTRYAG 1 cut(s) 810
SfuI TTCGAA 1 cut(s) 1298
SinI GGWCC 1 cut(s) 1333
SmiMI CAYNNNNRTG 1 cut(s) 1373
SpeI ACTAGT 2 cut(s) 608, 929
SseBI AGGCCT 1 cut(s) 15
SsiI CCGC 7 cut(s) 225, 345, 585, 633, 731, 735, 1176
SspI AATATT 2 cut(s) 624, 880
SspMI CTAG 5 cut(s) 17, 180, 609, 728, 930
StuI AGGCCT 1 cut(s) 15
StyD4I CCNGG 6 cut(s) 102, 680, 699, 1069, 1229, 1329
StyI CCWWGG 2 cut(s) 16, 1336
TaaI ACNGT 3 cut(s) 46, 410, 1358
TaqI TCGA 4 cut(s) 403, 653, 825, 1298
TatI WGTACW 1 cut(s) 1104
TauI GCSGC 4 cut(s) 228, 348, 734, 737
TfiI GAWTC 2 cut(s) 274, 801
Tru1I TTAA 2 cut(s) 78, 120
Tru9I TTAA 2 cut(s) 78, 120
TscAI CASTG 3 cut(s) 238, 382, 770
TseI GCWGC 6 cut(s) 228, 354, 1484, 1487, 1490, 1498
TspDTI ATGAA 4 cut(s) 966, 1170, 1227, 1262
TspGWI ACGGA 4 cut(s) 147, 454, 1079, 1232
TspRI CASTG 3 cut(s) 238, 382, 770
VpaK11BI GGWCC 1 cut(s) 1333
VspI ATTAAT 1 cut(s) 78
XapI RAATTY 3 cut(s) 755, 1079, 1171
XcmI CCANNNNNNNNNTGG 2 cut(s) 119, 424
XmaJI CCTAGG 1 cut(s) 16
XmiI GTMKAC 2 cut(s) 127, 1314
XmnI GAANNNNTTC 2 cut(s) 409, 1055
XspI CTAG 5 cut(s) 17, 180, 609, 728, 930
ZrmI AGTACT 1 cut(s) 1106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.