pycom02g09880

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Reverse (-)
6835246 .. 6838929
3684 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g09880.3

Sequence Viewer

Length: 1254 bp
ATGTCTCGGTGTTTTCCGTACCCTCCTCCTGGGTACGTGAAGAAGGGGATCCACGATGAGGCCCTGATCGATTCGATTAAGCTCCAAAGAGAAGATGAGAAGGCCATTAAAGAAAAGAAGAGGGAGAAAAAACGAGAGAAGAAAGAAAAGAAGGCTCGAGAAAATGGGGAGCCTGAAAATAAGAAGCAGAGTCATAAGAAAAGGCACAAAGTTGAAAGGCACCAAGAAGACAAGAAAGGTAGAGACTATGGAAAGAAGAGAAAACATGAAACGGAAAACCTTGACAAGAGTGACCTTACTGAAGAACATGAGCAACCAGTTGGTTCCCAGAACTCTTCTGATAGCACCGTTAACAGCAACAAAAGGCAGAAGCAGGACTCTCCCCCTGATGGCAGGCAAAATTCTGCAAGCATTCTTCGGATCGATCGGTTGCCTCTCCAAAGGCACAAAGATCCTGAACTGCTACCCGGTGAGGAGCAGCCTTGCCGGTTCCCTCTCAAATCGCACAAAGATCCAGTGGTGCTATCCAGAGAGAAACAACCTTGCCAGTTGCCTCTCCAAAAGCACAAGGATCCAGTAGTGCTACCCAAAGAGGAACAGCCTTGCCGGTTGTCTCTTCAAAGGAACAAAGATCCAGATTTGCTACCCAGTCCTGAACAGCCTTGCCGGTTGTCTCTCCAAAGGCAAAAAGGTGCAGAAGTTCTACCCAGCCAGGAACAGCCTTCCAGGTTTTCTTTCCAAAGGCCTAAAGGTACAGATGTTCTCCCCAGCCAGGAACAGCCTTCCTGGTTGTTCCTCCAAAGGCCCAAAGGTCCAGAAGTGCTACCCAGCCAAGAACAGCCTTGCTCTTCCTCAGGAAGGACAGATAATGCCTTTGTTGTAGGACTGCAAGAACCTGCTCCTAAACAAGGCATAGAGGAGGGACAACATCCATGCGCTACTTCTGGAAATGCTAGCAATGAACGCTCTTCCAGGCGTGGTAAAGAAAAACACCGGAAGTCTGGCAGTGGTTCTCTTCCTTCACAATACAGAGAGCTAATTGAAAACTGGGTTCAACCTCCTCTCTCACAATGTCTTCACATGGATGTCGACGATGAGGGATGGTTCGAGGCAAAGACAAAATGGAATTGTGGCGTTGAGAAACCTACAGTCGTCAGTGACAGCCTGAGCTATGGTGACGCAACGTCTTGGCCATGTGCTTGCCTCTTCCCCGAGTCCGATATATATGCATTGCCATACACAGTACCGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

418

Amino Acids

47.62

Weight (kDa)

8.86

Isoelectric Point (pI)

74.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 904
AccB1I GGYRCC 1 cut(s) 219
AccI GTMKAC 1 cut(s) 1089
AclWI GGATC 8 cut(s) 43, 56, 428, 446, 506, 566, 579, 626
AcoI YGGCCR 1 cut(s) 1190
AcsI RAATTY 1 cut(s) 400
AcuI CTGAAG 1 cut(s) 321
AfaI GTAC 4 cut(s) 20, 35, 754, 1245
AfiI CCNNNNNNNGG 6 cut(s) 29, 58, 389, 772, 858, 908
AgsI TTSAA 4 cut(s) 215, 620, 1043, 1055
AhdI GACNNNNNGTC 1 cut(s) 1183
AjnI CCWGG 6 cut(s) 28, 711, 725, 771, 785, 971
AluBI AGCT 3 cut(s) 82, 1036, 1170
AluI AGCT 3 cut(s) 82, 1036, 1170
Alw26I GTCTC 4 cut(s) 9, 237, 618, 678
AlwI GGATC 8 cut(s) 43, 56, 428, 446, 506, 566, 579, 626
Ama87I CYCGRG 2 cut(s) 156, 1211
AoxI GGCC 5 cut(s) 60, 102, 743, 803, 1190
ApeKI GCWGC 1 cut(s) 478
ApoI RAATTY 1 cut(s) 400
AspLEI GCGC 1 cut(s) 938
AspS9I GGNCC 3 cut(s) 61, 804, 812
AsuC2I CCSGG 1 cut(s) 468
AsuHPI GGTGA 2 cut(s) 482, 1187
AsuNHI GCTAGC 1 cut(s) 953
AvaI CYCGRG 2 cut(s) 156, 1211
AvaII GGWCC 1 cut(s) 812
AxyI CCTNAGG 1 cut(s) 853
BaeI ACNNNNGTAYC 2 cut(s) 744, 777
BalI TGGCCA 1 cut(s) 1192
BamHI GGATCC 2 cut(s) 48, 571
BanI GGYRCC 1 cut(s) 219
BbsI GAAGAC 2 cut(s) 234, 1067
BbvI GCAGC 1 cut(s) 490
BccI CCATC 2 cut(s) 383, 1095
BcgI CGANNNNNNTGC 2 cut(s) 1208, 1242
BciT130I CCWGG 6 cut(s) 30, 713, 727, 773, 787, 973
BcnI CCSGG 1 cut(s) 468
BcoDI GTCTC 4 cut(s) 9, 237, 618, 678
BfaI CTAG 1 cut(s) 954
BfmI CTRYAG 1 cut(s) 1146
BfuAI ACCTGC 1 cut(s) 904
BisI GCNGC 1 cut(s) 479
BlsI GCNGC 1 cut(s) 480
Bme1390I CCNGG 7 cut(s) 30, 468, 713, 727, 773, 787, 973
Bme18I GGWCC 1 cut(s) 812
BmeRI GACNNNNNGTC 1 cut(s) 1183
BmeT110I CYCGRG 2 cut(s) 156, 1211
BmgT120I GGNCC 3 cut(s) 61, 804, 812
BmiI GGNNCC 6 cut(s) 50, 171, 221, 325, 491, 573
BmrFI CCNGG 7 cut(s) 30, 468, 713, 727, 773, 787, 973
BmrI ACTGGG 2 cut(s) 642, 1057
BmtI GCTAGC 1 cut(s) 957
BmuI ACTGGG 2 cut(s) 642, 1057
BpiI GAAGAC 2 cut(s) 234, 1067
Bpu10I CCTNAGC 1 cut(s) 1166
BpuMI CCSGG 1 cut(s) 468
Bsa29I ATCGAT 2 cut(s) 69, 423
BsaAI YACGTR 1 cut(s) 37
BsaJI CCNNGG 1 cut(s) 29
BsaWI WCCGGW 1 cut(s) 993
Bsc4I CCNNNNNNNGG 6 cut(s) 29, 58, 389, 772, 858, 908
Bse118I RCCGGY 3 cut(s) 486, 606, 666
Bse1I ACTGG 6 cut(s) 317, 515, 547, 575, 648, 1052
Bse21I CCTNAGG 1 cut(s) 853
Bse3DI GCAATG 2 cut(s) 964, 1229
BseBI CCWGG 6 cut(s) 30, 713, 727, 773, 787, 973
BseCI ATCGAT 2 cut(s) 69, 423
BseDI CCNNGG 1 cut(s) 29
BseGI GGATG 3 cut(s) 928, 1090, 1106
BseLI CCNNNNNNNGG 6 cut(s) 29, 58, 389, 772, 858, 908
BseMI GCAATG 2 cut(s) 964, 1229
BseMII CTCAG 2 cut(s) 867, 1157
BseNI ACTGG 6 cut(s) 317, 515, 547, 575, 648, 1052
BseRI GAGGAG 4 cut(s) 15, 488, 932, 1050
BseXI GCAGC 1 cut(s) 490
BseYI CCCAGC 3 cut(s) 707, 767, 827
BsgI GTGCAG 1 cut(s) 714
Bsh1285I CGRYCG 1 cut(s) 427
BshFI GGCC 5 cut(s) 62, 104, 745, 805, 1192
BshNI GGYRCC 1 cut(s) 219
BshVI ATCGAT 2 cut(s) 69, 423
BsiEI CGRYCG 1 cut(s) 427
BsiHKCI CYCGRG 2 cut(s) 156, 1211
BsiSI CCGG 5 cut(s) 468, 487, 607, 667, 994
BslFI GGGAC 1 cut(s) 936
BslI CCNNNNNNNGG 6 cut(s) 29, 58, 389, 772, 858, 908
BsmAI GTCTC 4 cut(s) 9, 237, 618, 678
BsmFI GGGAC 1 cut(s) 936
BsmI GAATGC 1 cut(s) 411
BsnI GGCC 5 cut(s) 62, 104, 745, 805, 1192
BsoBI CYCGRG 2 cut(s) 156, 1211
Bsp143I GATC 8 cut(s) 48, 66, 420, 424, 451, 511, 571, 631
BspANI GGCC 5 cut(s) 62, 104, 745, 805, 1192
BspCNI CTCAG 2 cut(s) 866, 1158
BspDI ATCGAT 2 cut(s) 69, 423
BspLI GGNNCC 6 cut(s) 50, 171, 221, 325, 491, 573
BspMI ACCTGC 1 cut(s) 904
BspOI GCTAGC 1 cut(s) 957
BspPI GGATC 8 cut(s) 43, 56, 428, 446, 506, 566, 579, 626
BspQI GCTCTTC 2 cut(s) 853, 973
BspT107I GGYRCC 1 cut(s) 219
BsrDI GCAATG 2 cut(s) 964, 1229
BsrFI RCCGGY 3 cut(s) 486, 606, 666
BsrI ACTGG 6 cut(s) 317, 515, 547, 575, 648, 1052
BssAI RCCGGY 3 cut(s) 486, 606, 666
BssECI CCNNGG 1 cut(s) 29
BssMI GATC 8 cut(s) 48, 66, 420, 424, 451, 511, 571, 631
Bst2UI CCWGG 6 cut(s) 30, 713, 727, 773, 787, 973
Bst4CI ACNGT 4 cut(s) 349, 1150, 1243, 1248
Bst6I CTCTTC 8 cut(s) 113, 251, 340, 621, 853, 973, 1020, 1211
BstBAI YACGTR 1 cut(s) 37
BstC8I GCNNGC 4 cut(s) 395, 409, 955, 1201
BstDEI CTNAG 2 cut(s) 853, 1166
BstENI CCTNNNNNAGG 2 cut(s) 856, 906
BstF5I GGATG 3 cut(s) 928, 1090, 1106
BstHHI GCGC 1 cut(s) 938
BstKTI GATC 8 cut(s) 51, 69, 423, 427, 454, 514, 574, 634
BstMAI GTCTC 4 cut(s) 9, 237, 618, 678
BstMBI GATC 8 cut(s) 48, 66, 420, 424, 451, 511, 571, 631
BstMCI CGRYCG 1 cut(s) 427
BstMWI GCNNNNNNNGC 1 cut(s) 963
BstNI CCWGG 6 cut(s) 30, 713, 727, 773, 787, 973
BstSCI CCNGG 7 cut(s) 28, 466, 711, 725, 771, 785, 971
BstSFI CTRYAG 1 cut(s) 1146
BstV1I GCAGC 1 cut(s) 490
BstV2I GAAGAC 2 cut(s) 234, 1067
BstX2I RGATCY 5 cut(s) 48, 451, 511, 571, 631
BstYI RGATCY 5 cut(s) 48, 451, 511, 571, 631
Bsu15I ATCGAT 2 cut(s) 69, 423
Bsu36I CCTNAGG 1 cut(s) 853
BsuRI GGCC 5 cut(s) 62, 104, 745, 805, 1192
BsuTUI ATCGAT 2 cut(s) 69, 423
BtsCI GGATG 3 cut(s) 928, 1090, 1106
BtsI GCAGTG 1 cut(s) 1012
BtsIMutI CAGTG 3 cut(s) 522, 1012, 1162
BveI ACCTGC 1 cut(s) 904
Cac8I GCNNGC 4 cut(s) 395, 409, 955, 1201
CfoI GCGC 1 cut(s) 938
Cfr10I RCCGGY 3 cut(s) 486, 606, 666
Cfr13I GGNCC 3 cut(s) 61, 804, 812
ClaI ATCGAT 2 cut(s) 69, 423
CseI GACGC 1 cut(s) 1187
Csp6I GTAC 4 cut(s) 19, 34, 753, 1244
CviAII CATG 5 cut(s) 266, 308, 933, 1081, 1194
CviQI GTAC 4 cut(s) 19, 34, 753, 1244
DdeI CTNAG 2 cut(s) 853, 1166
DpnI GATC 8 cut(s) 50, 68, 422, 426, 453, 513, 573, 633
DpnII GATC 8 cut(s) 48, 66, 420, 424, 451, 511, 571, 631
DriI GACNNNNNGTC 1 cut(s) 1183
EaeI YGGCCR 1 cut(s) 1190
Eam1104I CTCTTC 8 cut(s) 113, 251, 340, 621, 853, 973, 1020, 1211
Eam1105I GACNNNNNGTC 1 cut(s) 1183
EarI CTCTTC 8 cut(s) 113, 251, 340, 621, 853, 973, 1020, 1211
Eco147I AGGCCT 1 cut(s) 745
Eco47I GGWCC 1 cut(s) 812
Eco57I CTGAAG 1 cut(s) 321
Eco81I CCTNAGG 1 cut(s) 853
Eco88I CYCGRG 2 cut(s) 156, 1211
EcoNI CCTNNNNNAGG 2 cut(s) 856, 906
EcoO109I RGGNCCY 1 cut(s) 61
EcoRII CCWGG 6 cut(s) 28, 711, 725, 771, 785, 971
EcoT22I ATGCAT 1 cut(s) 1231
FaeI CATG 5 cut(s) 269, 311, 936, 1084, 1197
FaqI GGGAC 1 cut(s) 936
FatI CATG 5 cut(s) 265, 307, 932, 1080, 1193
FblI GTMKAC 1 cut(s) 1089
Fnu4HI GCNGC 1 cut(s) 479
FokI GGATG 3 cut(s) 915, 1097, 1113
Fsp4HI GCNGC 1 cut(s) 479
FspBI CTAG 1 cut(s) 954
GlaI GCGC 1 cut(s) 937
GluI GCNGC 1 cut(s) 479
GsaI CCCAGC 3 cut(s) 711, 771, 831
HaeIII GGCC 5 cut(s) 62, 104, 745, 805, 1192
HapII CCGG 5 cut(s) 468, 487, 607, 667, 994
HgaI GACGC 1 cut(s) 1187
HhaI GCGC 1 cut(s) 938
Hin1II CATG 5 cut(s) 269, 311, 936, 1084, 1197
Hin6I GCGC 1 cut(s) 936
HinP1I GCGC 1 cut(s) 936
HincII GTYRAC 2 cut(s) 352, 1090
HindII GTYRAC 2 cut(s) 352, 1090
HinfI GANTC 4 cut(s) 71, 190, 377, 1214
HpaI GTTAAC 1 cut(s) 352
HpaII CCGG 5 cut(s) 468, 487, 607, 667, 994
HphI GGTGA 2 cut(s) 482, 1187
Hpy166II GTNNAC 2 cut(s) 352, 1090
Hpy188I TCNGA 3 cut(s) 340, 420, 1219
Hpy188III TCNNGA 8 cut(s) 158, 455, 528, 635, 653, 815, 855, 945
Hpy8I GTNNAC 2 cut(s) 352, 1090
Hpy99I CGWCG 1 cut(s) 1094
HpyAV CCTTC 7 cut(s) 37, 94, 145, 732, 792, 852, 1029
HpyCH4III ACNGT 4 cut(s) 349, 1150, 1243, 1248
HpyCH4IV ACGT 2 cut(s) 36, 1184
HpyCH4V TGCA 4 cut(s) 407, 695, 889, 1229
HpyF10VI GCNNNNNNNGC 1 cut(s) 963
HpyF3I CTNAG 2 cut(s) 853, 1166
HpySE526I ACGT 2 cut(s) 36, 1184
Hsp92II CATG 5 cut(s) 269, 311, 936, 1084, 1197
HspAI GCGC 1 cut(s) 936
KspAI GTTAAC 1 cut(s) 352
Kzo9I GATC 8 cut(s) 48, 66, 420, 424, 451, 511, 571, 631
LguI GCTCTTC 2 cut(s) 853, 973
LmnI GCTCC 4 cut(s) 87, 169, 475, 904
Lsp1109I GCAGC 1 cut(s) 490
MaeI CTAG 1 cut(s) 954
MaeII ACGT 2 cut(s) 36, 1184
MaeIII GTNAC 3 cut(s) 290, 1157, 1175
MalI GATC 8 cut(s) 50, 68, 422, 426, 453, 513, 573, 633
MboI GATC 8 cut(s) 48, 66, 420, 424, 451, 511, 571, 631
MflI RGATCY 5 cut(s) 48, 451, 511, 571, 631
MlsI TGGCCA 1 cut(s) 1192
MluCI AATT 3 cut(s) 400, 1038, 1126
MluNI TGGCCA 1 cut(s) 1192
MlyI GAGTC 3 cut(s) 199, 371, 1223
Mox20I TGGCCA 1 cut(s) 1192
Mph1103I ATGCAT 1 cut(s) 1231
MscI TGGCCA 1 cut(s) 1192
MseI TTAA 3 cut(s) 78, 108, 351
MslI CAYNNNNRTG 1 cut(s) 1083
Msp20I TGGCCA 1 cut(s) 1192
MspI CCGG 5 cut(s) 468, 487, 607, 667, 994
MspR9I CCNGG 7 cut(s) 30, 468, 713, 727, 773, 787, 973
Mva1269I GAATGC 1 cut(s) 411
MvaI CCWGG 6 cut(s) 30, 713, 727, 773, 787, 973
MwoI GCNNNNNNNGC 1 cut(s) 963
NciI CCSGG 1 cut(s) 468
NdeII GATC 8 cut(s) 48, 66, 420, 424, 451, 511, 571, 631
NheI GCTAGC 1 cut(s) 953
NlaIII CATG 5 cut(s) 269, 311, 936, 1084, 1197
NlaIV GGNNCC 6 cut(s) 50, 171, 221, 325, 491, 573
NmuCI GTSAC 3 cut(s) 290, 1157, 1175
NsiI ATGCAT 1 cut(s) 1231
PaeR7I CTCGAG 1 cut(s) 156
PceI AGGCCT 1 cut(s) 745
PciSI GCTCTTC 2 cut(s) 853, 973
PctI GAATGC 1 cut(s) 411
PfeI GAWTC 1 cut(s) 71
PkrI GCNGC 1 cut(s) 480
Ple19I CGATCG 1 cut(s) 427
PleI GAGTC 3 cut(s) 198, 371, 1222
PpsI GAGTC 3 cut(s) 198, 371, 1222
Ppu21I YACGTR 1 cut(s) 37
Psp6I CCWGG 6 cut(s) 28, 711, 725, 771, 785, 971
PspFI CCCAGC 3 cut(s) 707, 767, 827
PspGI CCWGG 6 cut(s) 28, 711, 725, 771, 785, 971
PspN4I GGNNCC 6 cut(s) 50, 171, 221, 325, 491, 573
PspPI GGNCC 3 cut(s) 61, 804, 812
PsuI RGATCY 5 cut(s) 48, 451, 511, 571, 631
PvuI CGATCG 1 cut(s) 427
RsaI GTAC 4 cut(s) 20, 35, 754, 1245
RsaNI GTAC 4 cut(s) 19, 34, 753, 1244
RseI CAYNNNNRTG 1 cut(s) 1083
SalI GTCGAC 1 cut(s) 1088
SapI GCTCTTC 2 cut(s) 853, 973
SaqAI TTAA 3 cut(s) 78, 108, 351
SatI GCNGC 1 cut(s) 479
Sau3AI GATC 8 cut(s) 48, 66, 420, 424, 451, 511, 571, 631
Sau96I GGNCC 3 cut(s) 61, 804, 812
SchI GAGTC 3 cut(s) 199, 371, 1223
ScrFI CCNGG 7 cut(s) 30, 468, 713, 727, 773, 787, 973
SfcI CTRYAG 1 cut(s) 1146
Sfr274I CTCGAG 1 cut(s) 156
SinI GGWCC 1 cut(s) 812
SlaI CTCGAG 1 cut(s) 156
SmiMI CAYNNNNRTG 1 cut(s) 1083
SmlI CTYRAG 1 cut(s) 156
SmoI CTYRAG 1 cut(s) 156
Sse9I AATT 3 cut(s) 400, 1038, 1126
SseBI AGGCCT 1 cut(s) 745
SspMI CTAG 1 cut(s) 954
StuI AGGCCT 1 cut(s) 745
StyD4I CCNGG 7 cut(s) 28, 466, 711, 725, 771, 785, 971
TaaI ACNGT 4 cut(s) 349, 1150, 1243, 1248
TaiI ACGT 2 cut(s) 39, 1187
TaqI TCGA 6 cut(s) 69, 74, 157, 423, 1089, 1107
TasI AATT 3 cut(s) 400, 1038, 1126
TfiI GAWTC 1 cut(s) 71
Tru1I TTAA 3 cut(s) 78, 108, 351
Tru9I TTAA 3 cut(s) 78, 108, 351
TscAI CASTG 3 cut(s) 522, 1012, 1162
TseFI GTSAC 3 cut(s) 290, 1157, 1175
TseI GCWGC 1 cut(s) 478
Tsp45I GTSAC 3 cut(s) 290, 1157, 1175
TspDTI ATGAA 2 cut(s) 282, 975
TspGWI ACGGA 2 cut(s) 6, 287
TspRI CASTG 3 cut(s) 522, 1012, 1162
VpaK11BI GGWCC 1 cut(s) 812
XagI CCTNNNNNAGG 2 cut(s) 856, 906
XapI RAATTY 1 cut(s) 400
XhoI CTCGAG 1 cut(s) 156
XmiI GTMKAC 1 cut(s) 1089
XspI CTAG 1 cut(s) 954
Zsp2I ATGCAT 1 cut(s) 1231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.