Rh2BG128000

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
10933450 .. 10936480
3031 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG128000.1

Sequence Viewer

Length: 1515 bp
ATGTCTCGGTGTTTTCCTTACCCTCCTCCCGGTTATGTGAAGAAGGGGATCTGCGATGAGGCTTTGATCGAACCGATTAAGCTCCAAGGAGAAGCTGAGAAGGCCAAGAAAGAAAAGAAGAGAGAGAAAAAACGAGAGAAGAAAGAAAAGAAGGCTAGAGAAAATGGGGAGGTTGAAGACAAGAAGCACCATCACAAAAAAGGGAACAAAGATGAAAGGCAGCAAGAAGATGAGAAAGTCAGGGAACATGGCAAGAAGAGAGAACATGAAGAAGCTGAAATTCTGGACATGAGTACCCTAACGGAAGAGCATCCAGTTGGTTCCCAGAATTCTTCTGACAGTACCCTTAACAGCAATAACAGCAACAAAAGGCAGAAGCAGAACTTGTCTCCTGAGTGTAGGCAAAATACCGGGAGCATTCTTCGTATCCGGTTGCCTCTCCAAAGGCACAAAGATCAAGAAGTGCTACTGAGAGAGGAATTGCCTTCCCGGTTGCCTCCCCACAGGAACAATGCTCCAGAGGAACAGCTTTTTCGGTTGCCTCTCCAAAGGACCAATGCTCCAGAAGTTTCTCCCAGAGAGAAACTGCCTAGCCGGTTGCCTCTTCAAAGAAACAAAGATTTAGCATTGTTACCCAAAGAGGAACAGCCTTGCAGGTTGCCTCTACAAAGGAACAAACATCTGGAAGTGTTACCCAAAGAGGAACAACCCTGCAGGTTGCCTCTACAAAGGAACAAACATCTGGAAGTATTGCCCAAAGAGGAACAACCCTGCAGGTTGCCTCTTAAGACACAGAAAGAACCACCAGTGCTAACTCGAGAGAAACAGTTGCCTTCTCTTAAAAGGCAAAAGGATCAAGATGTTCTACCCAAAGAGAAAAAGACTTGCCTGGTGTCTCTCCAAAGGACCAAGGATTCAGAAGTATTACCCAGGGAGAAACAACAGCCTAGCCAGCTACCTCTCCAAGCGAACAAAGATCGAAAAATAGTACCCAGGGAGAAACAGCTTAGCCAGTTGCCTCTCCAAAGGAGCAAGGATCCAGCAGTGCTATCTAGAGAGGAACAGCCCAGCCTGTTGCTTCTCCAAAAGCAGAAAGTTCCACAAGTGCTGCTCAGAGAAGAACAGCCGTGTTCTGTCTCTGGAAGGACTGCTGATGCCTCTGTTCAAGGTAGGTGTGAACCTGCTCCTGTACTTGGAAGTGATGAGGGAGAAAAACCCTGTTCTACTTCTGGAATTGAGGGCAAAGAAAACCGAAAAAGCAAGCGAAGAGCATCACAATACATAGAGCTATTTGAGAAATGGGTTGAGCCTCCTCTTTTATTGAGTTTACCACCCACGGATATTGATGATGATCAGGGATGGTTGCTTAAGACGAATAAGAACCCAAACCGTGGGGTTGAGAAATGTGTTGCTGCCAGTGACAGCTTGAGCTGTGGAGACTCGGTGTCTTGGCCACGTGCTCGCCTCTTGCCTGAGGTTGATGTATTTGCTTTGCCATATACCGTACCATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

504

Amino Acids

57.99

Weight (kDa)

9.3

Isoelectric Point (pI)

73.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 4 cut(s) 645, 705, 765, 1189
AccB7I CCANNNNNTGG 1 cut(s) 1391
AclWI GGATC 4 cut(s) 56, 861, 1031, 1044
AcoI YGGCCR 1 cut(s) 1451
AcsI RAATTY 2 cut(s) 279, 328
AcvI CACGTG 1 cut(s) 1457
AfaI GTAC 5 cut(s) 295, 343, 990, 1191, 1506
AfiI CCNNNNNNNGG 3 cut(s) 29, 1193, 1391
AflII CTTAAG 2 cut(s) 785, 1367
AgsI TTSAA 3 cut(s) 176, 608, 1166
AhdI GACNNNNNGTC 1 cut(s) 1444
AjnI CCWGG 3 cut(s) 888, 929, 992
AluBI AGCT 9 cut(s) 82, 95, 275, 529, 955, 1006, 1288, 1425, 1431
AluI AGCT 9 cut(s) 82, 95, 275, 529, 955, 1006, 1288, 1425, 1431
Alw21I GWGCWC 1 cut(s) 1462
Alw26I GTCTC 5 cut(s) 9, 393, 900, 1141, 1431
AlwI GGATC 4 cut(s) 56, 861, 1031, 1044
Ama87I CYCGRG 1 cut(s) 816
AoxI GGCC 2 cut(s) 102, 1451
ApeKI GCWGC 3 cut(s) 220, 1108, 1412
ApoI RAATTY 2 cut(s) 279, 328
AspS9I GGNCC 2 cut(s) 552, 906
AsuC2I CCSGG 3 cut(s) 30, 412, 490
AvaI CYCGRG 1 cut(s) 816
AvaII GGWCC 2 cut(s) 552, 906
AxyI CCTNAGG 1 cut(s) 1473
BaeI ACNNNNGTAYC 2 cut(s) 277, 310
BalI TGGCCA 1 cut(s) 1453
BamHI GGATCC 1 cut(s) 1036
BbrPI CACGTG 1 cut(s) 1457
BbsI GAAGAC 1 cut(s) 183
Bbv12I GWGCWC 1 cut(s) 1462
BbvI GCAGC 3 cut(s) 232, 1095, 1399
BccI CCATC 2 cut(s) 198, 1353
BceAI ACGGC 1 cut(s) 1111
BciT130I CCWGG 3 cut(s) 890, 931, 994
BciVI GTATCC 1 cut(s) 437
BclI TGATCA 1 cut(s) 1351
BcnI CCSGG 3 cut(s) 30, 412, 490
BcoDI GTCTC 5 cut(s) 9, 393, 900, 1141, 1431
BfaI CTAG 4 cut(s) 156, 591, 948, 1053
BfmI CTRYAG 2 cut(s) 712, 772
BfrI CTTAAG 2 cut(s) 785, 1367
BfuAI ACCTGC 4 cut(s) 645, 705, 765, 1189
BfuI GTATCC 1 cut(s) 437
BisI GCNGC 3 cut(s) 221, 1109, 1413
BlpI GCTNAGC 1 cut(s) 1007
BlsI GCNGC 3 cut(s) 222, 1110, 1414
Bme1390I CCNGG 6 cut(s) 30, 412, 490, 890, 931, 994
Bme18I GGWCC 2 cut(s) 552, 906
BmeRI GACNNNNNGTC 1 cut(s) 1444
BmeT110I CYCGRG 1 cut(s) 816
BmgT120I GGNCC 2 cut(s) 552, 906
BmiI GGNNCC 2 cut(s) 322, 1038
BmrFI CCNGG 6 cut(s) 30, 412, 490, 890, 931, 994
BmsI GCATC 3 cut(s) 319, 1144, 1280
BpiI GAAGAC 1 cut(s) 183
BpmI CTGGAG 2 cut(s) 501, 546
Bpu1102I GCTNAGC 1 cut(s) 1007
BpuEI CTTGAG 1 cut(s) 1447
BpuMI CCSGG 3 cut(s) 30, 412, 490
BsaAI YACGTR 1 cut(s) 1457
BsaBI GATNNNNATC 1 cut(s) 1350
BsaJI CCNNGG 8 cut(s) 85, 909, 929, 930, 992, 993, 1335, 1390
BsaWI WCCGGW 1 cut(s) 429
BsaXI ACNNNNNCTCC 4 cut(s) 544, 574, 1428, 1458
Bsc4I CCNNNNNNNGG 3 cut(s) 29, 1193, 1391
Bse118I RCCGGY 1 cut(s) 594
Bse1I ACTGG 4 cut(s) 314, 806, 1012, 1416
Bse21I CCTNAGG 1 cut(s) 1473
Bse8I GATNNNNATC 1 cut(s) 1350
BseBI CCWGG 3 cut(s) 890, 931, 994
BseDI CCNNGG 8 cut(s) 85, 909, 929, 930, 992, 993, 1335, 1390
BseGI GGATG 2 cut(s) 310, 1364
BseJI GATNNNNATC 1 cut(s) 1350
BseLI CCNNNNNNNGG 3 cut(s) 29, 1193, 1391
BseMII CTCAG 5 cut(s) 87, 384, 461, 1126, 1464
BseNI ACTGG 4 cut(s) 314, 806, 1012, 1416
BseRI GAGGAG 2 cut(s) 15, 1302
BseXI GCAGC 3 cut(s) 232, 1095, 1399
BseYI CCCAGC 1 cut(s) 1067
BshFI GGCC 2 cut(s) 104, 1453
BsiHKAI GWGCWC 1 cut(s) 1462
BsiHKCI CYCGRG 1 cut(s) 816
BsiSI CCGG 5 cut(s) 30, 411, 430, 490, 595
BslI CCNNNNNNNGG 3 cut(s) 29, 1193, 1391
BsmAI GTCTC 5 cut(s) 9, 393, 900, 1141, 1431
BsmI GAATGC 1 cut(s) 417
BsnI GGCC 2 cut(s) 104, 1453
BsoBI CYCGRG 1 cut(s) 816
Bsp1286I GDGCHC 1 cut(s) 1462
Bsp143I GATC 7 cut(s) 48, 66, 454, 853, 976, 1036, 1351
Bsp1720I GCTNAGC 1 cut(s) 1007
BspANI GGCC 2 cut(s) 104, 1453
BspCNI CTCAG 5 cut(s) 88, 385, 462, 1125, 1465
BspLI GGNNCC 2 cut(s) 322, 1038
BspMAI CTGCAG 2 cut(s) 716, 776
BspMI ACCTGC 4 cut(s) 645, 705, 765, 1189
BspPI GGATC 4 cut(s) 56, 861, 1031, 1044
BspQI GCTCTTC 2 cut(s) 300, 1261
BspTI CTTAAG 2 cut(s) 785, 1367
BsrFI RCCGGY 1 cut(s) 594
BsrI ACTGG 4 cut(s) 314, 806, 1012, 1416
BssAI RCCGGY 1 cut(s) 594
BssECI CCNNGG 8 cut(s) 85, 909, 929, 930, 992, 993, 1335, 1390
BssMI GATC 7 cut(s) 48, 66, 454, 853, 976, 1036, 1351
BssT1I CCWWGG 2 cut(s) 85, 909
Bst2UI CCWGG 3 cut(s) 890, 931, 994
Bst4CI ACNGT 4 cut(s) 341, 828, 1391, 1504
Bst6I CTCTTC 5 cut(s) 113, 251, 300, 609, 1261
BstAFI CTTAAG 2 cut(s) 785, 1367
BstBAI YACGTR 1 cut(s) 1457
BstC8I GCNNGC 3 cut(s) 953, 1262, 1462
BstDEI CTNAG 6 cut(s) 96, 393, 470, 1007, 1112, 1473
BstDSI CCRYGG 2 cut(s) 1335, 1390
BstF5I GGATG 2 cut(s) 310, 1364
BstKTI GATC 7 cut(s) 51, 69, 457, 856, 979, 1039, 1354
BstMAI GTCTC 5 cut(s) 9, 393, 900, 1141, 1431
BstMBI GATC 7 cut(s) 48, 66, 454, 853, 976, 1036, 1351
BstMWI GCNNNNNNNGC 3 cut(s) 101, 360, 952
BstNI CCWGG 3 cut(s) 890, 931, 994
BstSCI CCNGG 6 cut(s) 28, 410, 488, 888, 929, 992
BstSFI CTRYAG 2 cut(s) 712, 772
BstV1I GCAGC 3 cut(s) 232, 1095, 1399
BstV2I GAAGAC 1 cut(s) 183
BstX2I RGATCY 2 cut(s) 48, 1036
BstYI RGATCY 2 cut(s) 48, 1036
Bsu36I CCTNAGG 1 cut(s) 1473
BsuI GTATCC 1 cut(s) 437
BsuRI GGCC 2 cut(s) 104, 1453
BtgI CCRYGG 2 cut(s) 1335, 1390
BtgZI GCGATG 1 cut(s) 69
BtsCI GGATG 2 cut(s) 310, 1364
BtsI GCAGTG 1 cut(s) 1050
BtsIMutI CAGTG 3 cut(s) 813, 1050, 1423
BveI ACCTGC 4 cut(s) 645, 705, 765, 1189
Cac8I GCNNGC 3 cut(s) 953, 1262, 1462
Cfr10I RCCGGY 1 cut(s) 594
Cfr13I GGNCC 2 cut(s) 552, 906
Csp6I GTAC 5 cut(s) 294, 342, 989, 1190, 1505
CspCI CAANNNNNGTGG 2 cut(s) 1324, 1359
CviAII CATG 3 cut(s) 248, 266, 289
CviQI GTAC 5 cut(s) 294, 342, 989, 1190, 1505
DdeI CTNAG 6 cut(s) 96, 393, 470, 1007, 1112, 1473
DpnI GATC 7 cut(s) 50, 68, 456, 855, 978, 1038, 1353
DpnII GATC 7 cut(s) 48, 66, 454, 853, 976, 1036, 1351
DriI GACNNNNNGTC 1 cut(s) 1444
EaeI YGGCCR 1 cut(s) 1451
Eam1104I CTCTTC 5 cut(s) 113, 251, 300, 609, 1261
Eam1105I GACNNNNNGTC 1 cut(s) 1444
EarI CTCTTC 5 cut(s) 113, 251, 300, 609, 1261
Eco130I CCWWGG 2 cut(s) 85, 909
Eco47I GGWCC 2 cut(s) 552, 906
Eco72I CACGTG 1 cut(s) 1457
Eco81I CCTNAGG 1 cut(s) 1473
Eco88I CYCGRG 1 cut(s) 816
EcoRI GAATTC 1 cut(s) 328
EcoRII CCWGG 3 cut(s) 888, 929, 992
EcoT14I CCWWGG 2 cut(s) 85, 909
ErhI CCWWGG 2 cut(s) 85, 909
FaeI CATG 3 cut(s) 251, 269, 292
FaiI YATR 7 cut(s) 36, 249, 267, 290, 1283, 1498, 1500
FalI AAGNNNNNCTT 2 cut(s) 368, 400
FatI CATG 3 cut(s) 247, 265, 288
FbaI TGATCA 1 cut(s) 1351
Fnu4HI GCNGC 3 cut(s) 221, 1109, 1413
FokI GGATG 2 cut(s) 297, 1371
Fsp4HI GCNGC 3 cut(s) 221, 1109, 1413
FspBI CTAG 4 cut(s) 156, 591, 948, 1053
GluI GCNGC 3 cut(s) 221, 1109, 1413
GsaI CCCAGC 1 cut(s) 1071
GsuI CTGGAG 2 cut(s) 501, 546
HaeIII GGCC 2 cut(s) 104, 1453
HapII CCGG 5 cut(s) 30, 411, 430, 490, 595
Hin1II CATG 3 cut(s) 251, 269, 292
HinfI GANTC 2 cut(s) 914, 1439
HpaII CCGG 5 cut(s) 30, 411, 430, 490, 595
Hpy166II GTNNAC 2 cut(s) 1178, 1328
Hpy188I TCNGA 3 cut(s) 337, 919, 1115
Hpy8I GTNNAC 2 cut(s) 1178, 1328
HpyAV CCTTC 6 cut(s) 37, 94, 145, 495, 843, 1137
HpyCH4III ACNGT 4 cut(s) 341, 828, 1391, 1504
HpyCH4IV ACGT 1 cut(s) 1456
HpyCH4V TGCA 3 cut(s) 654, 714, 774
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 360, 952
HpyF3I CTNAG 6 cut(s) 96, 393, 470, 1007, 1112, 1473
HpySE526I ACGT 1 cut(s) 1456
Hsp92II CATG 3 cut(s) 251, 269, 292
Ksp22I TGATCA 1 cut(s) 1351
Kzo9I GATC 7 cut(s) 48, 66, 454, 853, 976, 1036, 1351
LguI GCTCTTC 2 cut(s) 300, 1261
LmnI GCTCC 6 cut(s) 87, 414, 520, 565, 1029, 1189
Lsp1109I GCAGC 3 cut(s) 232, 1095, 1399
LweI GCATC 3 cut(s) 319, 1144, 1280
MaeI CTAG 4 cut(s) 156, 591, 948, 1053
MaeII ACGT 1 cut(s) 1456
MaeIII GTNAC 3 cut(s) 630, 690, 1418
MalI GATC 7 cut(s) 50, 68, 456, 855, 978, 1038, 1353
MboI GATC 7 cut(s) 48, 66, 454, 853, 976, 1036, 1351
MflI RGATCY 2 cut(s) 48, 1036
MhlI GDGCHC 1 cut(s) 1462
MlsI TGGCCA 1 cut(s) 1453
MluCI AATT 4 cut(s) 279, 328, 479, 1233
MluNI TGGCCA 1 cut(s) 1453
MlyI GAGTC 1 cut(s) 1433
Mox20I TGGCCA 1 cut(s) 1453
MscI TGGCCA 1 cut(s) 1453
MseI TTAA 6 cut(s) 78, 348, 786, 840, 1368, 1513
Msp20I TGGCCA 1 cut(s) 1453
MspCI CTTAAG 2 cut(s) 785, 1367
MspI CCGG 5 cut(s) 30, 411, 430, 490, 595
MspR9I CCNGG 6 cut(s) 30, 412, 490, 890, 931, 994
Mva1269I GAATGC 1 cut(s) 417
MvaI CCWGG 3 cut(s) 890, 931, 994
MwoI GCNNNNNNNGC 3 cut(s) 101, 360, 952
NciI CCSGG 3 cut(s) 30, 412, 490
NdeII GATC 7 cut(s) 48, 66, 454, 853, 976, 1036, 1351
NlaIII CATG 3 cut(s) 251, 269, 292
NlaIV GGNNCC 2 cut(s) 322, 1038
NmuCI GTSAC 1 cut(s) 1418
PaeR7I CTCGAG 1 cut(s) 816
PasI CCCWGGG 2 cut(s) 930, 993
PciSI GCTCTTC 2 cut(s) 300, 1261
PctI GAATGC 1 cut(s) 417
PfeI GAWTC 1 cut(s) 914
PflMI CCANNNNNTGG 1 cut(s) 1391
PkrI GCNGC 3 cut(s) 222, 1110, 1414
PleI GAGTC 1 cut(s) 1433
PmaCI CACGTG 1 cut(s) 1457
PmlI CACGTG 1 cut(s) 1457
PpsI GAGTC 1 cut(s) 1433
Ppu21I YACGTR 1 cut(s) 1457
Psp6I CCWGG 3 cut(s) 888, 929, 992
PspCI CACGTG 1 cut(s) 1457
PspFI CCCAGC 1 cut(s) 1067
PspGI CCWGG 3 cut(s) 888, 929, 992
PspN4I GGNNCC 2 cut(s) 322, 1038
PspPI GGNCC 2 cut(s) 552, 906
PstI CTGCAG 2 cut(s) 716, 776
PsuI RGATCY 2 cut(s) 48, 1036
RsaI GTAC 5 cut(s) 295, 343, 990, 1191, 1506
RsaNI GTAC 5 cut(s) 294, 342, 989, 1190, 1505
SapI GCTCTTC 2 cut(s) 300, 1261
SaqAI TTAA 6 cut(s) 78, 348, 786, 840, 1368, 1513
SatI GCNGC 3 cut(s) 221, 1109, 1413
Sau3AI GATC 7 cut(s) 48, 66, 454, 853, 976, 1036, 1351
Sau96I GGNCC 2 cut(s) 552, 906
SbfI CCTGCAGG 2 cut(s) 716, 776
SchI GAGTC 1 cut(s) 1433
ScrFI CCNGG 6 cut(s) 30, 412, 490, 890, 931, 994
SdaI CCTGCAGG 2 cut(s) 716, 776
SduI GDGCHC 1 cut(s) 1462
SfaNI GCATC 3 cut(s) 319, 1144, 1280
SfcI CTRYAG 2 cut(s) 712, 772
Sfr274I CTCGAG 1 cut(s) 816
SinI GGWCC 2 cut(s) 552, 906
SlaI CTCGAG 1 cut(s) 816
SmlI CTYRAG 4 cut(s) 785, 816, 1367, 1426
SmoI CTYRAG 4 cut(s) 785, 816, 1367, 1426
Sse8387I CCTGCAGG 2 cut(s) 716, 776
Sse9I AATT 4 cut(s) 279, 328, 479, 1233
SspMI CTAG 4 cut(s) 156, 591, 948, 1053
StyD4I CCNGG 6 cut(s) 28, 410, 488, 888, 929, 992
StyI CCWWGG 2 cut(s) 85, 909
TaaI ACNGT 4 cut(s) 341, 828, 1391, 1504
TaiI ACGT 1 cut(s) 1459
TaqI TCGA 3 cut(s) 69, 817, 979
TasI AATT 4 cut(s) 279, 328, 479, 1233
TatI WGTACW 1 cut(s) 1189
TfiI GAWTC 1 cut(s) 914
Tru1I TTAA 6 cut(s) 78, 348, 786, 840, 1368, 1513
Tru9I TTAA 6 cut(s) 78, 348, 786, 840, 1368, 1513
TscAI CASTG 3 cut(s) 813, 1050, 1423
TseFI GTSAC 1 cut(s) 1418
TseI GCWGC 3 cut(s) 220, 1108, 1412
Tsp45I GTSAC 1 cut(s) 1418
TspDTI ATGAA 2 cut(s) 228, 282
TspGWI ACGGA 2 cut(s) 317, 1352
TspRI CASTG 3 cut(s) 813, 1050, 1423
Van91I CCANNNNNTGG 1 cut(s) 1391
Vha464I CTTAAG 2 cut(s) 785, 1367
VpaK11BI GGWCC 2 cut(s) 552, 906
XapI RAATTY 2 cut(s) 279, 328
XbaI TCTAGA 1 cut(s) 1052
XhoI CTCGAG 1 cut(s) 816
XspI CTAG 4 cut(s) 156, 591, 948, 1053
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.