Rh2DG129100

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
10914419 .. 10918204
3786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG129100.1

Sequence Viewer

Length: 1572 bp
ATGTCTCGGTGTTTTCCTTACCCTCCTCCCGGGTATGTGAAGAAGGGGATCTGCGATGAGGCTTTGATCGAACCGATTAAGCTCCAAGGAGAAGCTGAGAAGGCCAAGAAAGAAAAGAAGAGAGAGAAAAAACGAGAGAAGAAAGAAAAGAAGGCTAGAGAAAATGGGGAGGTTGAAGACAAGAAGCACCATCACAAAAAAGGGAACAAAGATGAAAGGCAGCAAGAAGATGAGAAAGTCAGGGAACATGGCAAGAAGGGAGAACGTGAAGAAGCTGAAATTCTGGACATGAGTACCCTAACGGAAGAGCATCCAGTTGGTTCCCAGAATTCTTCTGACAGTACCCTTAACAGCAATAACAGCAACAAAAGGCAGAAGCAGAACTTGTCTCCTGAGTGCAGGCAAAATACCGGGAGCATTCTTCGTATCCGGTTGCCTCTCCAAAGGCACAAAGATCAAGAAGTGCTACTGAGAGAGGAATTGCCTTCCCGGTTGCCTCCCCACAGGAACAATGCTCCAGAGGAACAGCTTTTTCGGTTGCCTCTCCAAAGGACCAATGCTCCAGAAGTTTCTCCCAGAGAGAAACTGCCTAGCTGGTTGCCTCTTCAAAGAAACAAAGATTCAGCATCTTTACCCAAAGAGGAACAGCCTTGCAGGTTACCTCTACAAAGGAACAAACATCTGGAAGTGTTACCCAAAGAGGAACAACCCTGCAGGTTGCCTCTACAAAGGAACAAACATCTGGAAGTGTTACCCAAAGAGGAACAACCCTGCAGGTTGCCTCTACAAAGGAACAAACATCTGGAGGTATTGCCCAAAGAGGAACAACCCTGCAGGTTGCCTCTTAAGACACAGAAAGAACCACCTGTGCTAACTCGAGAGAAACAGCCTTCTCTTAAAAGGCAAAAGGGTCAAGATGTTCTACCCAAAGAGAAAAAGACTTGCCTGGTGTCTCTCCAAAGGACCAAGGATTCAGAAGTATTACCCAGGGAGAAACAACAGCCTAGCCAGCTGCCTCTCCAAGCGAACAAAGATCGAAAAATAGTACCCAGGGAGAAACAGCTTAGCCAGTTGCCTCTCCAAAGGAACAAGGATCCAGCAGTGCTATCTAGAGAGGAACAGCCCAGCCAGTTGCTTCTCCAAAAGCAGAAAGTTCCACAAGTGCTGCTCAGAGAAGAACAGCCGTGTTCCGTCTCTGGAAGGATTGCTGATGCCTCTGTTCATGGTAGGTGTGAACCTGCTCCTGTACTTGGAAGGGATGAGGGAGAAAAACCCTGTTCTACTTCTGGAATTGAGGGCAAAGAAAACCGAAAAAGCAAGCGAAGAGCATCACAATACATAGAGCTATTTGAGAAATGGGTTGAGCCTCCTCTTTTATTAAGTTTACCACCCACAGATATTGATGATGATCAGGGATGGTTGCTTAAGACGAATAAGAACCCAAACCGTGGGGTTGAGAAATGTGTTGCTGCCAGTGACAGCTTGAGCTGTGGAGACTCGGTGTCTTGGCCATGTGCTCGCCTCTTGCCTGAGGTTGATGTATATGCTTTGCCATATACCGTACCATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

523

Amino Acids

60.22

Weight (kDa)

9.27

Isoelectric Point (pI)

73.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 5 cut(s) 645, 705, 765, 825, 1246
AccB7I CCANNNNNTGG 1 cut(s) 1448
AclWI GGATC 3 cut(s) 56, 1088, 1101
AcoI YGGCCR 1 cut(s) 1508
AcsI RAATTY 2 cut(s) 279, 328
AfaI GTAC 5 cut(s) 295, 343, 1047, 1248, 1563
AfiI CCNNNNNNNGG 3 cut(s) 29, 1250, 1448
AflII CTTAAG 2 cut(s) 845, 1424
AgsI TTSAA 2 cut(s) 176, 608
AhdI GACNNNNNGTC 1 cut(s) 1501
AjnI CCWGG 3 cut(s) 945, 986, 1049
Alw21I GWGCWC 1 cut(s) 1519
Alw26I GTCTC 5 cut(s) 9, 393, 957, 1198, 1488
AlwI GGATC 3 cut(s) 56, 1088, 1101
Ama87I CYCGRG 2 cut(s) 29, 876
AoxI GGCC 2 cut(s) 102, 1508
ApeKI GCWGC 4 cut(s) 220, 1012, 1165, 1469
ApoI RAATTY 2 cut(s) 279, 328
AspS9I GGNCC 2 cut(s) 552, 963
AsuC2I CCSGG 4 cut(s) 30, 31, 412, 490
AvaI CYCGRG 2 cut(s) 29, 876
AvaII GGWCC 2 cut(s) 552, 963
AxyI CCTNAGG 1 cut(s) 1530
BaeI ACNNNNGTAYC 2 cut(s) 277, 310
BalI TGGCCA 1 cut(s) 1510
BamHI GGATCC 1 cut(s) 1093
BbsI GAAGAC 1 cut(s) 183
Bbv12I GWGCWC 1 cut(s) 1519
BbvI GCAGC 4 cut(s) 232, 999, 1152, 1456
BccI CCATC 2 cut(s) 198, 1410
BceAI ACGGC 1 cut(s) 1168
BciT130I CCWGG 3 cut(s) 947, 988, 1051
BciVI GTATCC 1 cut(s) 437
BclI TGATCA 1 cut(s) 1408
BcnI CCSGG 4 cut(s) 30, 31, 412, 490
BcoDI GTCTC 5 cut(s) 9, 393, 957, 1198, 1488
BfaI CTAG 4 cut(s) 156, 591, 1005, 1110
BfmI CTRYAG 3 cut(s) 712, 772, 832
BfrI CTTAAG 2 cut(s) 845, 1424
BfuAI ACCTGC 5 cut(s) 645, 705, 765, 825, 1246
BfuI GTATCC 1 cut(s) 437
BisI GCNGC 4 cut(s) 221, 1013, 1166, 1470
BlpI GCTNAGC 1 cut(s) 1064
BlsI GCNGC 4 cut(s) 222, 1014, 1167, 1471
Bme1390I CCNGG 7 cut(s) 30, 31, 412, 490, 947, 988, 1051
Bme18I GGWCC 2 cut(s) 552, 963
BmeRI GACNNNNNGTC 1 cut(s) 1501
BmeT110I CYCGRG 2 cut(s) 29, 876
BmgT120I GGNCC 2 cut(s) 552, 963
BmiI GGNNCC 2 cut(s) 322, 1095
BmrFI CCNGG 7 cut(s) 30, 31, 412, 490, 947, 988, 1051
BmsI GCATC 4 cut(s) 319, 635, 1201, 1337
BpiI GAAGAC 1 cut(s) 183
BpmI CTGGAG 3 cut(s) 501, 546, 824
Bpu1102I GCTNAGC 1 cut(s) 1064
BpuEI CTTGAG 1 cut(s) 1504
BpuMI CCSGG 4 cut(s) 30, 31, 412, 490
BsaBI GATNNNNATC 1 cut(s) 1407
BsaJI CCNNGG 8 cut(s) 29, 85, 966, 986, 987, 1049, 1050, 1447
BsaWI WCCGGW 1 cut(s) 429
BsaXI ACNNNNNCTCC 4 cut(s) 544, 574, 1485, 1515
Bsc4I CCNNNNNNNGG 3 cut(s) 29, 1250, 1448
Bse1I ACTGG 4 cut(s) 314, 1069, 1129, 1473
Bse21I CCTNAGG 1 cut(s) 1530
Bse8I GATNNNNATC 1 cut(s) 1407
BseBI CCWGG 3 cut(s) 947, 988, 1051
BseDI CCNNGG 8 cut(s) 29, 85, 966, 986, 987, 1049, 1050, 1447
BseGI GGATG 3 cut(s) 310, 1264, 1421
BseJI GATNNNNATC 1 cut(s) 1407
BseLI CCNNNNNNNGG 3 cut(s) 29, 1250, 1448
BseMII CTCAG 5 cut(s) 87, 384, 461, 1183, 1521
BseNI ACTGG 4 cut(s) 314, 1069, 1129, 1473
BseRI GAGGAG 2 cut(s) 15, 1359
BseXI GCAGC 4 cut(s) 232, 999, 1152, 1456
BseYI CCCAGC 1 cut(s) 1124
BsgI GTGCAG 1 cut(s) 418
BshFI GGCC 2 cut(s) 104, 1510
BsiHKAI GWGCWC 1 cut(s) 1519
BsiHKCI CYCGRG 2 cut(s) 29, 876
BsiSI CCGG 4 cut(s) 30, 411, 430, 490
BslI CCNNNNNNNGG 3 cut(s) 29, 1250, 1448
BsmAI GTCTC 5 cut(s) 9, 393, 957, 1198, 1488
BsmBI CGTCTC 1 cut(s) 1198
BsmI GAATGC 1 cut(s) 417
BsnI GGCC 2 cut(s) 104, 1510
BsoBI CYCGRG 2 cut(s) 29, 876
Bsp1286I GDGCHC 1 cut(s) 1519
Bsp143I GATC 6 cut(s) 48, 66, 454, 1033, 1093, 1408
Bsp1720I GCTNAGC 1 cut(s) 1064
BspANI GGCC 2 cut(s) 104, 1510
BspCNI CTCAG 5 cut(s) 88, 385, 462, 1182, 1522
BspLI GGNNCC 2 cut(s) 322, 1095
BspMAI CTGCAG 3 cut(s) 716, 776, 836
BspMI ACCTGC 5 cut(s) 645, 705, 765, 825, 1246
BspPI GGATC 3 cut(s) 56, 1088, 1101
BspQI GCTCTTC 2 cut(s) 300, 1318
BspTI CTTAAG 2 cut(s) 845, 1424
BsrI ACTGG 4 cut(s) 314, 1069, 1129, 1473
BssECI CCNNGG 8 cut(s) 29, 85, 966, 986, 987, 1049, 1050, 1447
BssMI GATC 6 cut(s) 48, 66, 454, 1033, 1093, 1408
BssT1I CCWWGG 2 cut(s) 85, 966
Bst2UI CCWGG 3 cut(s) 947, 988, 1051
Bst4CI ACNGT 3 cut(s) 341, 1448, 1561
Bst6I CTCTTC 4 cut(s) 113, 300, 609, 1318
BstAFI CTTAAG 2 cut(s) 845, 1424
BstC8I GCNNGC 4 cut(s) 401, 1010, 1319, 1519
BstDEI CTNAG 6 cut(s) 96, 393, 470, 1064, 1169, 1530
BstDSI CCRYGG 1 cut(s) 1447
BstEII GGTNACC 1 cut(s) 657
BstF5I GGATG 3 cut(s) 310, 1264, 1421
BstKTI GATC 6 cut(s) 51, 69, 457, 1036, 1096, 1411
BstMAI GTCTC 5 cut(s) 9, 393, 957, 1198, 1488
BstMBI GATC 6 cut(s) 48, 66, 454, 1033, 1093, 1408
BstMWI GCNNNNNNNGC 3 cut(s) 101, 360, 1009
BstNI CCWGG 3 cut(s) 947, 988, 1051
BstPI GGTNACC 1 cut(s) 657
BstSCI CCNGG 7 cut(s) 28, 29, 410, 488, 945, 986, 1049
BstSFI CTRYAG 3 cut(s) 712, 772, 832
BstV1I GCAGC 4 cut(s) 232, 999, 1152, 1456
BstV2I GAAGAC 1 cut(s) 183
BstX2I RGATCY 2 cut(s) 48, 1093
BstYI RGATCY 2 cut(s) 48, 1093
Bsu36I CCTNAGG 1 cut(s) 1530
BsuI GTATCC 1 cut(s) 437
BsuRI GGCC 2 cut(s) 104, 1510
BtgI CCRYGG 1 cut(s) 1447
BtgZI GCGATG 1 cut(s) 69
BtsCI GGATG 3 cut(s) 310, 1264, 1421
BtsI GCAGTG 1 cut(s) 1107
BtsIMutI CAGTG 2 cut(s) 1107, 1480
BveI ACCTGC 5 cut(s) 645, 705, 765, 825, 1246
Cac8I GCNNGC 4 cut(s) 401, 1010, 1319, 1519
Cfr13I GGNCC 2 cut(s) 552, 963
Cfr9I CCCGGG 1 cut(s) 29
Csp6I GTAC 5 cut(s) 294, 342, 1046, 1247, 1562
CspCI CAANNNNNGTGG 2 cut(s) 1381, 1416
CviAII CATG 4 cut(s) 248, 289, 1223, 1512
CviQI GTAC 5 cut(s) 294, 342, 1046, 1247, 1562
DdeI CTNAG 6 cut(s) 96, 393, 470, 1064, 1169, 1530
DpnI GATC 6 cut(s) 50, 68, 456, 1035, 1095, 1410
DpnII GATC 6 cut(s) 48, 66, 454, 1033, 1093, 1408
DriI GACNNNNNGTC 1 cut(s) 1501
EaeI YGGCCR 1 cut(s) 1508
Eam1104I CTCTTC 4 cut(s) 113, 300, 609, 1318
Eam1105I GACNNNNNGTC 1 cut(s) 1501
EarI CTCTTC 4 cut(s) 113, 300, 609, 1318
Eco130I CCWWGG 2 cut(s) 85, 966
Eco47I GGWCC 2 cut(s) 552, 963
Eco81I CCTNAGG 1 cut(s) 1530
Eco88I CYCGRG 2 cut(s) 29, 876
Eco91I GGTNACC 1 cut(s) 657
EcoO65I GGTNACC 1 cut(s) 657
EcoRI GAATTC 1 cut(s) 328
EcoRII CCWGG 3 cut(s) 945, 986, 1049
EcoT14I CCWWGG 2 cut(s) 85, 966
ErhI CCWWGG 2 cut(s) 85, 966
Esp3I CGTCTC 1 cut(s) 1198
FaeI CATG 4 cut(s) 251, 292, 1226, 1515
FalI AAGNNNNNCTT 2 cut(s) 368, 400
FatI CATG 4 cut(s) 247, 288, 1222, 1511
FbaI TGATCA 1 cut(s) 1408
Fnu4HI GCNGC 4 cut(s) 221, 1013, 1166, 1470
FokI GGATG 3 cut(s) 297, 1271, 1428
Fsp4HI GCNGC 4 cut(s) 221, 1013, 1166, 1470
FspBI CTAG 4 cut(s) 156, 591, 1005, 1110
GluI GCNGC 4 cut(s) 221, 1013, 1166, 1470
GsaI CCCAGC 1 cut(s) 1128
GsuI CTGGAG 3 cut(s) 501, 546, 824
HaeIII GGCC 2 cut(s) 104, 1510
HapII CCGG 4 cut(s) 30, 411, 430, 490
Hin1II CATG 4 cut(s) 251, 292, 1226, 1515
HinfI GANTC 3 cut(s) 620, 971, 1496
HpaII CCGG 4 cut(s) 30, 411, 430, 490
Hpy166II GTNNAC 2 cut(s) 1235, 1385
Hpy188I TCNGA 3 cut(s) 337, 976, 1172
Hpy8I GTNNAC 2 cut(s) 1235, 1385
HpyAV CCTTC 8 cut(s) 37, 94, 145, 250, 495, 900, 1194, 1248
HpyCH4III ACNGT 3 cut(s) 341, 1448, 1561
HpyCH4IV ACGT 1 cut(s) 265
HpyCH4V TGCA 5 cut(s) 399, 654, 714, 774, 834
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 360, 1009
HpyF3I CTNAG 6 cut(s) 96, 393, 470, 1064, 1169, 1530
HpySE526I ACGT 1 cut(s) 265
Hsp92II CATG 4 cut(s) 251, 292, 1226, 1515
Ksp22I TGATCA 1 cut(s) 1408
Kzo9I GATC 6 cut(s) 48, 66, 454, 1033, 1093, 1408
LguI GCTCTTC 2 cut(s) 300, 1318
LmnI GCTCC 5 cut(s) 87, 414, 520, 565, 1246
Lsp1109I GCAGC 4 cut(s) 232, 999, 1152, 1456
LweI GCATC 4 cut(s) 319, 635, 1201, 1337
MaeI CTAG 4 cut(s) 156, 591, 1005, 1110
MaeII ACGT 1 cut(s) 265
MaeIII GTNAC 4 cut(s) 657, 690, 750, 1475
MalI GATC 6 cut(s) 50, 68, 456, 1035, 1095, 1410
MboI GATC 6 cut(s) 48, 66, 454, 1033, 1093, 1408
MflI RGATCY 2 cut(s) 48, 1093
MhlI GDGCHC 1 cut(s) 1519
MlsI TGGCCA 1 cut(s) 1510
MluCI AATT 4 cut(s) 279, 328, 479, 1290
MluNI TGGCCA 1 cut(s) 1510
MlyI GAGTC 1 cut(s) 1490
Mox20I TGGCCA 1 cut(s) 1510
MscI TGGCCA 1 cut(s) 1510
MseI TTAA 7 cut(s) 78, 348, 846, 897, 1379, 1425, 1570
Msp20I TGGCCA 1 cut(s) 1510
MspA1I CMGCKG 1 cut(s) 1012
MspCI CTTAAG 2 cut(s) 845, 1424
MspI CCGG 4 cut(s) 30, 411, 430, 490
MspR9I CCNGG 7 cut(s) 30, 31, 412, 490, 947, 988, 1051
Mva1269I GAATGC 1 cut(s) 417
MvaI CCWGG 3 cut(s) 947, 988, 1051
MwoI GCNNNNNNNGC 3 cut(s) 101, 360, 1009
NciI CCSGG 4 cut(s) 30, 31, 412, 490
NdeII GATC 6 cut(s) 48, 66, 454, 1033, 1093, 1408
NlaIII CATG 4 cut(s) 251, 292, 1226, 1515
NlaIV GGNNCC 2 cut(s) 322, 1095
NmuCI GTSAC 1 cut(s) 1475
PaeR7I CTCGAG 1 cut(s) 876
PasI CCCWGGG 2 cut(s) 987, 1050
PciSI GCTCTTC 2 cut(s) 300, 1318
PctI GAATGC 1 cut(s) 417
PfeI GAWTC 2 cut(s) 620, 971
PflMI CCANNNNNTGG 1 cut(s) 1448
PkrI GCNGC 4 cut(s) 222, 1014, 1167, 1471
PleI GAGTC 1 cut(s) 1490
PpsI GAGTC 1 cut(s) 1490
Psp6I CCWGG 3 cut(s) 945, 986, 1049
PspEI GGTNACC 1 cut(s) 657
PspFI CCCAGC 1 cut(s) 1124
PspGI CCWGG 3 cut(s) 945, 986, 1049
PspN4I GGNNCC 2 cut(s) 322, 1095
PspPI GGNCC 2 cut(s) 552, 963
PstI CTGCAG 3 cut(s) 716, 776, 836
PsuI RGATCY 2 cut(s) 48, 1093
PvuII CAGCTG 1 cut(s) 1012
RsaI GTAC 5 cut(s) 295, 343, 1047, 1248, 1563
RsaNI GTAC 5 cut(s) 294, 342, 1046, 1247, 1562
SapI GCTCTTC 2 cut(s) 300, 1318
SaqAI TTAA 7 cut(s) 78, 348, 846, 897, 1379, 1425, 1570
SatI GCNGC 4 cut(s) 221, 1013, 1166, 1470
Sau3AI GATC 6 cut(s) 48, 66, 454, 1033, 1093, 1408
Sau96I GGNCC 2 cut(s) 552, 963
SbfI CCTGCAGG 3 cut(s) 716, 776, 836
SchI GAGTC 1 cut(s) 1490
ScrFI CCNGG 7 cut(s) 30, 31, 412, 490, 947, 988, 1051
SdaI CCTGCAGG 3 cut(s) 716, 776, 836
SduI GDGCHC 1 cut(s) 1519
SfaNI GCATC 4 cut(s) 319, 635, 1201, 1337
SfcI CTRYAG 3 cut(s) 712, 772, 832
Sfr274I CTCGAG 1 cut(s) 876
SinI GGWCC 2 cut(s) 552, 963
SlaI CTCGAG 1 cut(s) 876
SmaI CCCGGG 1 cut(s) 31
SmlI CTYRAG 4 cut(s) 845, 876, 1424, 1483
SmoI CTYRAG 4 cut(s) 845, 876, 1424, 1483
Sse8387I CCTGCAGG 3 cut(s) 716, 776, 836
Sse9I AATT 4 cut(s) 279, 328, 479, 1290
SspMI CTAG 4 cut(s) 156, 591, 1005, 1110
StyD4I CCNGG 7 cut(s) 28, 29, 410, 488, 945, 986, 1049
StyI CCWWGG 2 cut(s) 85, 966
TaaI ACNGT 3 cut(s) 341, 1448, 1561
TaiI ACGT 1 cut(s) 268
TaqI TCGA 3 cut(s) 69, 877, 1036
TasI AATT 4 cut(s) 279, 328, 479, 1290
TatI WGTACW 1 cut(s) 1246
TfiI GAWTC 2 cut(s) 620, 971
Tru1I TTAA 7 cut(s) 78, 348, 846, 897, 1379, 1425, 1570
Tru9I TTAA 7 cut(s) 78, 348, 846, 897, 1379, 1425, 1570
TscAI CASTG 2 cut(s) 1107, 1480
TseFI GTSAC 1 cut(s) 1475
TseI GCWGC 4 cut(s) 220, 1012, 1165, 1469
Tsp45I GTSAC 1 cut(s) 1475
TspDTI ATGAA 2 cut(s) 228, 1211
TspGWI ACGGA 2 cut(s) 317, 1180
TspMI CCCGGG 1 cut(s) 29
TspRI CASTG 2 cut(s) 1107, 1480
Van91I CCANNNNNTGG 1 cut(s) 1448
Vha464I CTTAAG 2 cut(s) 845, 1424
VpaK11BI GGWCC 2 cut(s) 552, 963
XapI RAATTY 2 cut(s) 279, 328
XbaI TCTAGA 1 cut(s) 1109
XhoI CTCGAG 1 cut(s) 876
XmaI CCCGGG 1 cut(s) 29
XspI CTAG 4 cut(s) 156, 591, 1005, 1110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.