Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009213

Physical Location & Seq

Genomic Coordinates Forward (+)

7841940 .. 7843942

Gene Structure 2003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G18040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGCGTCGAGAGACCAAGTTAAGGCATCGCACATTTTGATTAAGCATCAAGGTTCTCGGAGGAAAGCGTCGTGGAAGGATCCAGAAGGGAAGATTATTCTGACTACCACTAGAGAAGCCGCCGTTGAGCAGCTTAAATCGATCCGTGAAGATATTGTCTCCGGCAAGGCGAATTTCGAAGAAGTGGCGACTCGTGTTTCTGACTGTAGCTCTGCTAAACGCGGCGGTGATCTTGGTTCCTTTGGTAGAGGTCAAATGCAGAAACCATTTGAGGAAGCAACTTACGCGCTCAAGGTTGGAGATATAAGCGACATTGTCGATACAGACAGTGGAGTCCACATCATTAAGAGAACAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0005911 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009909 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0030054 GO:0032879 GO:0032880 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051726 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04622 map04622

Pfam Domains

Protein Families

Rotamase

Protein Analysis

119

Amino Acids

13.01

Weight (kDa)

9.13

Isoelectric Point (pI)

37.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rotamase_3	PF13616	4 - 116	1.2e-21	PPIC-type PPIASE domain
Rotamase	PF00639	11 - 118	2.5e-25	PPIC-type PPIASE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18040
fragaria_vesca	FvH4_6g24550
malus_domestica	MD04G1047200.v1.1 MD08G1077500.v1.1
prunus_persica	Prupe.1G202600_v2.0.a1 Prupe.1G202600_v2.0.a1
pyrus_communis	pycom04g04110 pycom13g26680
rosa_chinensis	RchiOBHm_Chr3g0483651
rosa_laevigata	RLG00000023261
rosa_multiflora	Rmu_co8484139.1_g000001 Rmu_sc0008673.1_g000005
rosa_roxburghii	Rroxscaffold_6G00398150
rosa_rugosa	Rorug03G0207800 Rorug03G0207900 Rorug03G0208000
rosa_samantha	Rh3AG256200 Rh3BG292900 Rh3CG290700 Rh3DG286500
rosa_wichuraiana	Rw0G012020 Rw3G023140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	332
AccII	CGCG	2 cut(s)	222, 287
AciI	CCGC	3 cut(s)	120, 222, 225
AclWI	GGATC	3 cut(s)	74, 87, 136
AcsI	RAATTY	1 cut(s)	172
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	22
AluBI	AGCT	3 cut(s)	133, 210, 356
AluI	AGCT	3 cut(s)	133, 210, 356
Alw26I	GTCTC	2 cut(s)	6, 163
AlwI	GGATC	3 cut(s)	74, 87, 136
ApeKI	GCWGC	1 cut(s)	130
ApoI	RAATTY	1 cut(s)	172
AspLEI	GCGC	1 cut(s)	289
AsuHPI	GGTGA	1 cut(s)	239
AsuII	TTCGAA	1 cut(s)	177
BamHI	GGATCC	1 cut(s)	79
BauI	CACGAG	1 cut(s)	192
BbvI	GCAGC	1 cut(s)	142
BceAI	ACGGC	1 cut(s)	107
BcoDI	GTCTC	2 cut(s)	6, 163
BfaI	CTAG	1 cut(s)	111
BfmI	CTRYAG	1 cut(s)	205
BisI	GCNGC	3 cut(s)	120, 131, 223
BlsI	GCNGC	3 cut(s)	121, 132, 224
BmiI	GGNNCC	2 cut(s)	81, 238
BmsI	GCATC	2 cut(s)	35, 55
Bpu14I	TTCGAA	1 cut(s)	177
BpuEI	CTTGAG	1 cut(s)	275
Bsa29I	ATCGAT	1 cut(s)	140
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	6
Bsc4I	CCNNNNNNNGG	1 cut(s)	22
BseCI	ATCGAT	1 cut(s)	140
BseLI	CCNNNNNNNGG	1 cut(s)	22
BseXI	GCAGC	1 cut(s)	142
Bsh1236I	CGCG	2 cut(s)	222, 287
BshVI	ATCGAT	1 cut(s)	140
BsiSI	CCGG	1 cut(s)	162
BslI	CCNNNNNNNGG	1 cut(s)	22
BsmAI	GTCTC	2 cut(s)	6, 163
Bso31I	GGTCTC	1 cut(s)	6
Bsp119I	TTCGAA	1 cut(s)	177
Bsp143I	GATC	3 cut(s)	79, 141, 229
BspACI	CCGC	3 cut(s)	120, 222, 225
BspDI	ATCGAT	1 cut(s)	140
BspFNI	CGCG	2 cut(s)	222, 287
BspLI	GGNNCC	2 cut(s)	81, 238
BspPI	GGATC	3 cut(s)	74, 87, 136
BspT104I	TTCGAA	1 cut(s)	177
BspTNI	GGTCTC	1 cut(s)	6
BssMI	GATC	3 cut(s)	79, 141, 229
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	192
Bst2BI	CACGAG	1 cut(s)	192
Bst4CI	ACNGT	2 cut(s)	206, 329
BstACI	GRCGYC	1 cut(s)	5
BstBI	TTCGAA	1 cut(s)	177
BstFNI	CGCG	2 cut(s)	222, 287
BstHHI	GCGC	1 cut(s)	289
BstKTI	GATC	3 cut(s)	82, 144, 232
BstMAI	GTCTC	2 cut(s)	6, 163
BstMBI	GATC	3 cut(s)	79, 141, 229
BstMWI	GCNNNNNNNGC	1 cut(s)	284
BstSFI	CTRYAG	1 cut(s)	205
BstUI	CGCG	2 cut(s)	222, 287
BstV1I	GCAGC	1 cut(s)	142
BstX2I	RGATCY	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	79
Bsu15I	ATCGAT	1 cut(s)	140
BsuTUI	ATCGAT	1 cut(s)	140
BtgZI	GCGATG	1 cut(s)	12
BtsIMutI	CAGTG	1 cut(s)	334
CfoI	GCGC	1 cut(s)	289
ClaI	ATCGAT	1 cut(s)	140
CseI	GACGC	1 cut(s)	57
CviJI	RGCY	4 cut(s)	119, 133, 210, 356
CviKI_1	RGCY	4 cut(s)	119, 133, 210, 356
DpnI	GATC	3 cut(s)	81, 143, 231
DpnII	GATC	3 cut(s)	79, 141, 229
DrdI	GACNNNNNNGTC	1 cut(s)	332
DseDI	GACNNNNNNGTC	1 cut(s)	332
Eco31I	GGTCTC	1 cut(s)	6
FaiI	YATR	1 cut(s)	305
Fnu4HI	GCNGC	3 cut(s)	120, 131, 223
Fsp4HI	GCNGC	3 cut(s)	120, 131, 223
FspBI	CTAG	1 cut(s)	111
GlaI	GCGC	1 cut(s)	288
GluI	GCNGC	3 cut(s)	120, 131, 223
HapII	CCGG	1 cut(s)	162
HgaI	GACGC	1 cut(s)	57
HhaI	GCGC	1 cut(s)	289
Hin1I	GRCGYC	1 cut(s)	5
Hin6I	GCGC	1 cut(s)	287
HinP1I	GCGC	1 cut(s)	287
HinfI	GANTC	2 cut(s)	190, 333
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	1 cut(s)	239
Hpy166II	GTNNAC	1 cut(s)	337
Hpy188I	TCNGA	3 cut(s)	60, 102, 202
Hpy188III	TCNNGA	2 cut(s)	9, 83
Hpy8I	GTNNAC	1 cut(s)	337
Hpy99I	CGWCG	2 cut(s)	10, 73
HpyAV	CCTTC	2 cut(s)	70, 80
HpyCH4III	ACNGT	2 cut(s)	206, 329
HpyCH4V	TGCA	1 cut(s)	259
HpyF10VI	GCNNNNNNNGC	1 cut(s)	284
Hsp92I	GRCGYC	1 cut(s)	5
HspAI	GCGC	1 cut(s)	287
Kzo9I	GATC	3 cut(s)	79, 141, 229
LpnPI	CCDG	2 cut(s)	96, 175
Lsp1109I	GCAGC	1 cut(s)	142
LweI	GCATC	2 cut(s)	35, 55
MaeI	CTAG	1 cut(s)	111
MalI	GATC	3 cut(s)	81, 143, 231
MboI	GATC	3 cut(s)	79, 141, 229
MboII	GAAGA	3 cut(s)	103, 161, 191
MflI	RGATCY	1 cut(s)	79
MluCI	AATT	1 cut(s)	172
MlyI	GAGTC	2 cut(s)	184, 342
MmeI	TCCRAC	1 cut(s)	277
MnlI	CCTC	3 cut(s)	54, 242, 265
MseI	TTAA	4 cut(s)	21, 42, 135, 345
MspI	CCGG	1 cut(s)	162
MvnI	CGCG	2 cut(s)	222, 287
MwoI	GCNNNNNNNGC	1 cut(s)	284
NdeII	GATC	3 cut(s)	79, 141, 229
NlaIV	GGNNCC	2 cut(s)	81, 238
NspV	TTCGAA	1 cut(s)	177
PflFI	GACNNNGTC	1 cut(s)	314
PkrI	GCNGC	3 cut(s)	121, 132, 224
PleI	GAGTC	2 cut(s)	184, 341
PpsI	GAGTC	2 cut(s)	184, 341
PspN4I	GGNNCC	2 cut(s)	81, 238
PsuI	RGATCY	1 cut(s)	79
PsyI	GACNNNGTC	1 cut(s)	314
SaqAI	TTAA	4 cut(s)	21, 42, 135, 345
SatI	GCNGC	3 cut(s)	120, 131, 223
Sau3AI	GATC	3 cut(s)	79, 141, 229
SchI	GAGTC	2 cut(s)	184, 342
SetI	ASST	6 cut(s)	55, 135, 212, 253, 297, 358
SfaNI	GCATC	2 cut(s)	35, 55
SfcI	CTRYAG	1 cut(s)	205
SfuI	TTCGAA	1 cut(s)	177
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	1 cut(s)	172
SsiI	CCGC	3 cut(s)	120, 222, 225
SspMI	CTAG	1 cut(s)	111
TaaI	ACNGT	2 cut(s)	206, 329
TaqI	TCGA	4 cut(s)	8, 140, 177, 318
TasI	AATT	1 cut(s)	172
TauI	GCSGC	2 cut(s)	122, 225
Tru1I	TTAA	4 cut(s)	21, 42, 135, 345
Tru9I	TTAA	4 cut(s)	21, 42, 135, 345
TscAI	CASTG	1 cut(s)	334
TseI	GCWGC	1 cut(s)	130
TspGWI	ACGGA	1 cut(s)	134
TspRI	CASTG	1 cut(s)	334
Tth111I	GACNNNGTC	1 cut(s)	314
XapI	RAATTY	1 cut(s)	172
XspI	CTAG	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.