Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009213

Physical Location & Seq

Genomic Coordinates Reverse (-)

20077412 .. 20080380

Gene Structure 2969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G202600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGTCCTCGTCGGCGGGGAATCAGGTGAGGGCATCCCACATACTGATCAAGCACCAAGGTTCCAGAAGAAAGGCCTCATGGAAGGATCCAGAAGGTGCCATCATCAAGAACACCACCCGAGACTCTGCAGTCTCTCAACTGAAGGCCCTCCATGATGACATCATTTCCGGCAAGGCCAAGTTTGATGACCTCGCCTCTCGCTACTCTGATTGTAGCTCTGCCAAACGCGGCGGTGATCTTGGTCCTTTTGGCAAGGGCCAGATGCAGAAGCCGTTTGAAGAAGCGACATTTGCTCTCAAGGTTGGGGAGATGAGCGACATTGTGGATACAGATAGCGGAGTTCATATCATCATGAGAACTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0005911 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009909 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0030054 GO:0032879 GO:0032880 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051726 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04622 map04622

Pfam Domains

Protein Families

Rotamase

Protein Analysis

122

Amino Acids

13.05

Weight (kDa)

9.13

Isoelectric Point (pI)

39.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18040
fragaria_vesca	FvH4_6g24550
malus_domestica	MD04G1047200.v1.1 MD08G1077500.v1.1
prunus_persica	Prupe.1G202600_v2.0.a1 Prupe.1G202600_v2.0.a1
pyrus_communis	pycom04g04110 pycom13g26680
rosa_chinensis	RchiOBHm_Chr3g0483651
rosa_laevigata	RLG00000023261
rosa_multiflora	Rmu_co8484139.1_g000001 Rmu_sc0008673.1_g000005
rosa_roxburghii	Rroxscaffold_6G00398150
rosa_rugosa	Rorug03G0207800 Rorug03G0207900 Rorug03G0208000
rosa_samantha	Rh3AG256200 Rh3BG292900 Rh3CG290700 Rh3DG286500
rosa_wichuraiana	Rw0G012020 Rw3G023140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	128
AccB1I	GGYRCC	1 cut(s)	95
AccII	CGCG	1 cut(s)	228
AciI	CCGC	4 cut(s)	14, 228, 231, 336
AclWI	GGATC	2 cut(s)	80, 93
AcuI	CTGAAG	1 cut(s)	161
AgsI	TTSAA	1 cut(s)	278
AluBI	AGCT	1 cut(s)	216
AluI	AGCT	1 cut(s)	216
Alw26I	GTCTC	2 cut(s)	114, 136
AlwI	GGATC	2 cut(s)	80, 93
Ama87I	CYCGRG	1 cut(s)	117
AoxI	GGCC	4 cut(s)	72, 144, 174, 256
AspS9I	GGNCC	3 cut(s)	145, 242, 256
AsuHPI	GGTGA	2 cut(s)	37, 245
AvaI	CYCGRG	1 cut(s)	117
AvaII	GGWCC	1 cut(s)	242
BamHI	GGATCC	1 cut(s)	85
BanI	GGYRCC	1 cut(s)	95
BccI	CCATC	1 cut(s)	107
BceAI	ACGGC	1 cut(s)	256
BciVI	GTATCC	1 cut(s)	319
BclI	TGATCA	1 cut(s)	45
BcoDI	GTCTC	2 cut(s)	114, 136
BfmI	CTRYAG	1 cut(s)	126
BfuI	GTATCC	1 cut(s)	319
BisI	GCNGC	1 cut(s)	229
BlsI	GCNGC	1 cut(s)	230
Bme18I	GGWCC	1 cut(s)	242
BmeT110I	CYCGRG	1 cut(s)	117
BmgT120I	GGNCC	3 cut(s)	145, 242, 256
BmiI	GGNNCC	3 cut(s)	61, 87, 97
BmsI	GCATC	2 cut(s)	41, 252
BpuEI	CTTGAG	1 cut(s)	281
BsaJI	CCNNGG	1 cut(s)	55
Bse1I	ACTGG	1 cut(s)	364
BseDI	CCNNGG	1 cut(s)	55
BseGI	GGATG	1 cut(s)	32
BseNI	ACTGG	1 cut(s)	364
Bsh1236I	CGCG	1 cut(s)	228
BshFI	GGCC	4 cut(s)	74, 146, 176, 258
BshNI	GGYRCC	1 cut(s)	95
BsiHKCI	CYCGRG	1 cut(s)	117
BsiSI	CCGG	1 cut(s)	168
BsmAI	GTCTC	2 cut(s)	114, 136
BsnI	GGCC	4 cut(s)	74, 146, 176, 258
BsoBI	CYCGRG	1 cut(s)	117
Bsp143I	GATC	3 cut(s)	45, 85, 235
BspACI	CCGC	4 cut(s)	14, 228, 231, 336
BspANI	GGCC	4 cut(s)	74, 146, 176, 258
BspFNI	CGCG	1 cut(s)	228
BspHI	TCATGA	1 cut(s)	351
BspLI	GGNNCC	3 cut(s)	61, 87, 97
BspMAI	CTGCAG	1 cut(s)	130
BspPI	GGATC	2 cut(s)	80, 93
BspT107I	GGYRCC	1 cut(s)	95
BsrI	ACTGG	1 cut(s)	364
BssECI	CCNNGG	1 cut(s)	55
BssMI	GATC	3 cut(s)	45, 85, 235
BssT1I	CCWWGG	1 cut(s)	55
BstF5I	GGATG	1 cut(s)	32
BstFNI	CGCG	1 cut(s)	228
BstKTI	GATC	3 cut(s)	48, 88, 238
BstMAI	GTCTC	2 cut(s)	114, 136
BstMBI	GATC	3 cut(s)	45, 85, 235
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstSFI	CTRYAG	1 cut(s)	126
BstUI	CGCG	1 cut(s)	228
BstX2I	RGATCY	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	85
BsuI	GTATCC	1 cut(s)	319
BsuRI	GGCC	4 cut(s)	74, 146, 176, 258
BtsCI	GGATG	1 cut(s)	32
CciI	TCATGA	1 cut(s)	351
Cfr13I	GGNCC	3 cut(s)	145, 242, 256
CviAII	CATG	3 cut(s)	78, 152, 352
CviJI	RGCY	6 cut(s)	74, 146, 176, 216, 258, 271
CviKI_1	RGCY	6 cut(s)	74, 146, 176, 216, 258, 271
DpnI	GATC	3 cut(s)	47, 87, 237
DpnII	GATC	3 cut(s)	45, 85, 235
DrdI	GACNNNNNNGTC	1 cut(s)	128
DseDI	GACNNNNNNGTC	1 cut(s)	128
Eco130I	CCWWGG	1 cut(s)	55
Eco147I	AGGCCT	1 cut(s)	74
Eco47I	GGWCC	1 cut(s)	242
Eco57I	CTGAAG	1 cut(s)	161
Eco88I	CYCGRG	1 cut(s)	117
EcoO109I	RGGNCCY	1 cut(s)	145
EcoT14I	CCWWGG	1 cut(s)	55
ErhI	CCWWGG	1 cut(s)	55
FaeI	CATG	3 cut(s)	81, 155, 355
FaiI	YATR	5 cut(s)	41, 79, 153, 345, 353
FatI	CATG	3 cut(s)	77, 151, 351
FauI	CCCGC	1 cut(s)	7
FbaI	TGATCA	1 cut(s)	45
Fnu4HI	GCNGC	1 cut(s)	229
FokI	GGATG	1 cut(s)	19
Fsp4HI	GCNGC	1 cut(s)	229
GluI	GCNGC	1 cut(s)	229
HaeIII	GGCC	4 cut(s)	74, 146, 176, 258
HapII	CCGG	1 cut(s)	168
Hin1II	CATG	3 cut(s)	81, 155, 355
HinfI	GANTC	2 cut(s)	19, 122
HpaII	CCGG	1 cut(s)	168
HphI	GGTGA	2 cut(s)	37, 245
Hpy188I	TCNGA	1 cut(s)	208
Hpy188III	TCNNGA	4 cut(s)	63, 89, 106, 352
Hpy99I	CGWCG	1 cut(s)	13
HpyAV	CCTTC	3 cut(s)	76, 86, 136
HpyCH4V	TGCA	2 cut(s)	128, 265
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
Hsp92II	CATG	3 cut(s)	81, 155, 355
Ksp22I	TGATCA	1 cut(s)	45
Kzo9I	GATC	3 cut(s)	45, 85, 235
LpnPI	CCDG	6 cut(s)	8, 76, 102, 181, 272, 345
LweI	GCATC	2 cut(s)	41, 252
MalI	GATC	3 cut(s)	47, 87, 237
MboI	GATC	3 cut(s)	45, 85, 235
MboII	GAAGA	2 cut(s)	78, 290
MflI	RGATCY	1 cut(s)	85
MlyI	GAGTC	1 cut(s)	116
MnlI	CCTC	6 cut(s)	16, 21, 85, 158, 200, 205
MspI	CCGG	1 cut(s)	168
MvnI	CGCG	1 cut(s)	228
MwoI	GCNNNNNNNGC	1 cut(s)	290
NdeII	GATC	3 cut(s)	45, 85, 235
NlaIII	CATG	3 cut(s)	81, 155, 355
NlaIV	GGNNCC	3 cut(s)	61, 87, 97
PagI	TCATGA	1 cut(s)	351
PceI	AGGCCT	1 cut(s)	74
PfeI	GAWTC	1 cut(s)	19
PkrI	GCNGC	1 cut(s)	230
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
PspN4I	GGNNCC	3 cut(s)	61, 87, 97
PspPI	GGNCC	3 cut(s)	145, 242, 256
PstI	CTGCAG	1 cut(s)	130
PsuI	RGATCY	1 cut(s)	85
SatI	GCNGC	1 cut(s)	229
Sau3AI	GATC	3 cut(s)	45, 85, 235
Sau96I	GGNCC	3 cut(s)	145, 242, 256
SchI	GAGTC	1 cut(s)	116
SetI	ASST	6 cut(s)	27, 61, 97, 192, 218, 303
SfaNI	GCATC	2 cut(s)	41, 252
SfcI	CTRYAG	1 cut(s)	126
SinI	GGWCC	1 cut(s)	242
SmlI	CTYRAG	1 cut(s)	296
SmoI	CTYRAG	1 cut(s)	296
SseBI	AGGCCT	1 cut(s)	74
SsiI	CCGC	4 cut(s)	14, 228, 231, 336
StuI	AGGCCT	1 cut(s)	74
StyI	CCWWGG	1 cut(s)	55
TauI	GCSGC	1 cut(s)	231
TfiI	GAWTC	1 cut(s)	19
TspDTI	ATGAA	1 cut(s)	332
VpaK11BI	GGWCC	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.