Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0009213

Physical Location & Seq

Genomic Coordinates Reverse (-)

3670292 .. 3671568

Gene Structure 1277 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g04110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGTCCTCGTCAGAGGGGAATCAGGTGAGGGCGTCCCATATACTCATCAAGCACCAGGGTTCGAGAAGAAAGGCATCGTGGAAGGATCCTGAAGGGCGGATCATCAGGAACACCACCCGAGACTCTGCCGTCTCTCAGCTCAAGGCTCTCCGCGATGACATCCTTTCTGGAAAGGCCAAGTTTGATGATCTTGCCGCTCGCTACTCTGATTGCAGCTCTGCCAAACGTGGTGGCGATCTCGGTCCCTTTGGTCGGAACCAGATGCAGAAGCCTTTTGAAGAAGCAACATTTGCTCTCAAGGTTGGTGAGATGAGTGACATTGTGGATACGGATAGTGGTGTCCATATCATCAAGAGAACTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0005911 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009909 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0030054 GO:0032879 GO:0032880 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051726 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04622 map04622

Pfam Domains

Protein Families

Rotamase

Protein Analysis

122

Amino Acids

13.31

Weight (kDa)

9.6

Isoelectric Point (pI)

49.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rotamase_3	PF13616	5 - 118	2.9e-21	PPIC-type PPIASE domain
Rotamase	PF00639	13 - 120	1.3e-23	PPIC-type PPIASE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18040
fragaria_vesca	FvH4_6g24550
malus_domestica	MD04G1047200.v1.1 MD08G1077500.v1.1
prunus_persica	Prupe.1G202600_v2.0.a1 Prupe.1G202600_v2.0.a1
pyrus_communis	pycom04g04110 pycom13g26680
rosa_chinensis	RchiOBHm_Chr3g0483651
rosa_laevigata	RLG00000023261
rosa_multiflora	Rmu_co8484139.1_g000001 Rmu_sc0008673.1_g000005
rosa_roxburghii	Rroxscaffold_6G00398150
rosa_rugosa	Rorug03G0207800 Rorug03G0207900 Rorug03G0208000
rosa_samantha	Rh3AG256200 Rh3BG292900 Rh3CG290700 Rh3DG286500
rosa_wichuraiana	Rw0G012020 Rw3G023140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	128
AccBSI	CCGCTC	1 cut(s)	197
AccII	CGCG	1 cut(s)	153
AciI	CCGC	3 cut(s)	97, 151, 195
AclWI	GGATC	3 cut(s)	80, 93, 107
AcuI	CTGAAG	1 cut(s)	111
AcyI	GRCGYC	1 cut(s)	32
AfiI	CCNNNNNNNGG	1 cut(s)	252
AgsI	TTSAA	1 cut(s)	278
AjnI	CCWGG	1 cut(s)	54
AluBI	AGCT	2 cut(s)	139, 216
AluI	AGCT	2 cut(s)	139, 216
Alw26I	GTCTC	2 cut(s)	114, 136
AlwI	GGATC	3 cut(s)	80, 93, 107
Ama87I	CYCGRG	1 cut(s)	117
AoxI	GGCC	1 cut(s)	174
ApeKI	GCWGC	1 cut(s)	213
AspS9I	GGNCC	1 cut(s)	242
AsuHPI	GGTGA	2 cut(s)	37, 317
AvaI	CYCGRG	1 cut(s)	117
AvaII	GGWCC	1 cut(s)	242
BamHI	GGATCC	1 cut(s)	85
BbvI	GCAGC	1 cut(s)	225
BceAI	ACGGC	1 cut(s)	113
BciT130I	CCWGG	1 cut(s)	56
BciVI	GTATCC	1 cut(s)	319
BcoDI	GTCTC	2 cut(s)	114, 136
BfuI	GTATCC	1 cut(s)	319
BisI	GCNGC	2 cut(s)	195, 214
BlsI	GCNGC	2 cut(s)	196, 215
Bme1390I	CCNGG	1 cut(s)	56
Bme18I	GGWCC	1 cut(s)	242
BmeT110I	CYCGRG	1 cut(s)	117
BmgT120I	GGNCC	1 cut(s)	242
BmiI	GGNNCC	3 cut(s)	87, 244, 257
BmrFI	CCNGG	1 cut(s)	56
BmsI	GCATC	2 cut(s)	83, 252
BpuEI	CTTGAG	2 cut(s)	125, 281
BsaHI	GRCGYC	1 cut(s)	32
BsaJI	CCNNGG	1 cut(s)	55
Bsc4I	CCNNNNNNNGG	1 cut(s)	252
Bse1I	ACTGG	1 cut(s)	364
BseBI	CCWGG	1 cut(s)	56
BseDI	CCNNGG	1 cut(s)	55
BseGI	GGATG	1 cut(s)	159
BseLI	CCNNNNNNNGG	1 cut(s)	252
BseMII	CTCAG	1 cut(s)	149
BseNI	ACTGG	1 cut(s)	364
BseXI	GCAGC	1 cut(s)	225
Bsh1236I	CGCG	1 cut(s)	153
BshFI	GGCC	1 cut(s)	176
BsiHKCI	CYCGRG	1 cut(s)	117
BslFI	GGGAC	2 cut(s)	19, 228
BslI	CCNNNNNNNGG	1 cut(s)	252
BsmAI	GTCTC	2 cut(s)	114, 136
BsmBI	CGTCTC	1 cut(s)	136
BsmFI	GGGAC	2 cut(s)	19, 228
BsnI	GGCC	1 cut(s)	176
BsoBI	CYCGRG	1 cut(s)	117
Bsp143I	GATC	4 cut(s)	85, 99, 187, 235
BspACI	CCGC	3 cut(s)	97, 151, 195
BspANI	GGCC	1 cut(s)	176
BspCNI	CTCAG	1 cut(s)	148
BspFNI	CGCG	1 cut(s)	153
BspLI	GGNNCC	3 cut(s)	87, 244, 257
BspPI	GGATC	3 cut(s)	80, 93, 107
BsrBI	CCGCTC	1 cut(s)	197
BsrI	ACTGG	1 cut(s)	364
BssECI	CCNNGG	1 cut(s)	55
BssMI	GATC	4 cut(s)	85, 99, 187, 235
BssNI	GRCGYC	1 cut(s)	32
Bst2UI	CCWGG	1 cut(s)	56
BstACI	GRCGYC	1 cut(s)	32
BstAPI	GCANNNNNTGC	1 cut(s)	290
BstC8I	GCNNGC	1 cut(s)	199
BstDEI	CTNAG	1 cut(s)	135
BstF5I	GGATG	1 cut(s)	159
BstFNI	CGCG	1 cut(s)	153
BstKTI	GATC	4 cut(s)	88, 102, 190, 238
BstMAI	GTCTC	2 cut(s)	114, 136
BstMBI	GATC	4 cut(s)	85, 99, 187, 235
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstNI	CCWGG	1 cut(s)	56
BstSCI	CCNGG	1 cut(s)	54
BstUI	CGCG	1 cut(s)	153
BstV1I	GCAGC	1 cut(s)	225
BstX2I	RGATCY	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	85
BsuI	GTATCC	1 cut(s)	319
BsuRI	GGCC	1 cut(s)	176
BtgZI	GCGATG	1 cut(s)	168
BtsCI	GGATG	1 cut(s)	159
Cac8I	GCNNGC	1 cut(s)	199
Cfr13I	GGNCC	1 cut(s)	242
CseI	GACGC	1 cut(s)	21
CspCI	CAANNNNNGTGG	2 cut(s)	211, 246
CviJI	RGCY	5 cut(s)	139, 146, 176, 216, 271
CviKI_1	RGCY	5 cut(s)	139, 146, 176, 216, 271
DdeI	CTNAG	1 cut(s)	135
DpnI	GATC	4 cut(s)	87, 101, 189, 237
DpnII	GATC	4 cut(s)	85, 99, 187, 235
DrdI	GACNNNNNNGTC	1 cut(s)	128
DseDI	GACNNNNNNGTC	1 cut(s)	128
EciI	GGCGGA	1 cut(s)	112
Eco47I	GGWCC	1 cut(s)	242
Eco57I	CTGAAG	1 cut(s)	111
Eco88I	CYCGRG	1 cut(s)	117
EcoRII	CCWGG	1 cut(s)	54
Esp3I	CGTCTC	1 cut(s)	136
FaiI	YATR	3 cut(s)	39, 41, 345
FaqI	GGGAC	2 cut(s)	19, 228
Fnu4HI	GCNGC	2 cut(s)	195, 214
FokI	GGATG	1 cut(s)	146
Fsp4HI	GCNGC	2 cut(s)	195, 214
GluI	GCNGC	2 cut(s)	195, 214
HaeIII	GGCC	1 cut(s)	176
HgaI	GACGC	1 cut(s)	21
Hin1I	GRCGYC	1 cut(s)	32
HinfI	GANTC	2 cut(s)	19, 122
HphI	GGTGA	2 cut(s)	37, 317
Hpy188I	TCNGA	3 cut(s)	13, 208, 255
Hpy188III	TCNNGA	5 cut(s)	63, 89, 106, 168, 352
HpyAV	CCTTC	2 cut(s)	76, 86
HpyCH4IV	ACGT	1 cut(s)	226
HpyCH4V	TGCA	2 cut(s)	213, 265
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
HpyF3I	CTNAG	1 cut(s)	135
HpySE526I	ACGT	1 cut(s)	226
Hsp92I	GRCGYC	1 cut(s)	32
Kzo9I	GATC	4 cut(s)	85, 99, 187, 235
LpnPI	CCDG	8 cut(s)	8, 41, 68, 91, 102, 153, 272, 345
Lsp1109I	GCAGC	1 cut(s)	225
LweI	GCATC	2 cut(s)	83, 252
MaeII	ACGT	1 cut(s)	226
MaeIII	GTNAC	1 cut(s)	314
MalI	GATC	4 cut(s)	87, 101, 189, 237
MbiI	CCGCTC	1 cut(s)	197
MboI	GATC	4 cut(s)	85, 99, 187, 235
MboII	GAAGA	2 cut(s)	78, 290
MflI	RGATCY	1 cut(s)	85
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	1 cut(s)	233
MnlI	CCTC	3 cut(s)	7, 16, 21
MspR9I	CCNGG	1 cut(s)	56
MvaI	CCWGG	1 cut(s)	56
MvnI	CGCG	1 cut(s)	153
MwoI	GCNNNNNNNGC	1 cut(s)	290
NdeII	GATC	4 cut(s)	85, 99, 187, 235
NlaIV	GGNNCC	3 cut(s)	87, 244, 257
NmuCI	GTSAC	1 cut(s)	314
PfeI	GAWTC	1 cut(s)	19
PkrI	GCNGC	2 cut(s)	196, 215
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
Psp6I	CCWGG	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	54
PspN4I	GGNNCC	3 cut(s)	87, 244, 257
PspPI	GGNCC	1 cut(s)	242
PsuI	RGATCY	1 cut(s)	85
SatI	GCNGC	2 cut(s)	195, 214
Sau3AI	GATC	4 cut(s)	85, 99, 187, 235
Sau96I	GGNCC	1 cut(s)	242
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	1 cut(s)	56
SetI	ASST	5 cut(s)	27, 141, 218, 229, 303
SfaNI	GCATC	2 cut(s)	83, 252
SinI	GGWCC	1 cut(s)	242
SmlI	CTYRAG	2 cut(s)	140, 296
SmoI	CTYRAG	2 cut(s)	140, 296
SsiI	CCGC	3 cut(s)	97, 151, 195
StyD4I	CCNGG	1 cut(s)	54
TaiI	ACGT	1 cut(s)	229
TaqI	TCGA	1 cut(s)	62
TaqII	GACCGA	1 cut(s)	230
TauI	GCSGC	1 cut(s)	197
TfiI	GAWTC	1 cut(s)	19
TseFI	GTSAC	1 cut(s)	314
TseI	GCWGC	1 cut(s)	213
Tsp45I	GTSAC	1 cut(s)	314
TspGWI	ACGGA	1 cut(s)	344
VpaK11BI	GGWCC	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.