Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0009213

Physical Location & Seq

Genomic Coordinates Forward (+)

29273010 .. 29288256

Gene Structure 15247 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG286500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGGTGGCCCTAGACATCCGGTTTTAGAGGGCTGTTGGAGGCACACGGGGACAACTGGGTCGGATCTGCAAATTGTTGTGATGGCTAACATGAGTCGGCGTCTTCAGTCCTCCTTGAATCGATCTTCGTCTTCTCTTCTAATCTCCCCCAAAGTAAGATTCGAAGCTGCAAAGATAGAGCCATCCGACCGTAAAAGGAAGAAAGCAGCGTCTTCCCTCTCAGCAGATCATTCGGACAATAACAAAGACAAAAGGCAGAGAAGCACCAAGAGCAAAAAGACGAAAATGTCCTCATCGAATCAGGTCAGGGCATCCCACATACTGATCAAGCACCAAGGTTCCAGAAGAAAGGCCTCATGGAAGGATCCAGATGGTGTTGTTATCAGTAACACCACCCGAGATGCGGCTGTCACTCAACTTAAGTCACTTCGTGAGGACATTGTTTCTGGCAAGTTCACGTTTGACAATGTTGCTACTCGCTTCTCTGATTGCAGCTCTGCCAAGCGCGGTGGTGATCTTGGCCCTTTTGGCCGCGGCCAGATGCAGAAGCCTTTCGAAGAGGCAACATTCTCTCTCAAGGTTGGGGAGATAAGTGAAATTGTGGATACAGACAGTGGAGTTCATATCATCCTGAGGACCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0005911 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009909 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0030054 GO:0032879 GO:0032880 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051726 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04622 map04622

Pfam Domains

Protein Families

Rotamase

Protein Analysis

214

Amino Acids

23.51

Weight (kDa)

10.31

Isoelectric Point (pI)

61.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rotamase_3	PF13616	93 - 210	5.3e-20	PPIC-type PPIASE domain
Rotamase	PF00639	106 - 212	8.4e-24	PPIC-type PPIASE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18040
fragaria_vesca	FvH4_6g24550
malus_domestica	MD04G1047200.v1.1 MD08G1077500.v1.1
prunus_persica	Prupe.1G202600_v2.0.a1 Prupe.1G202600_v2.0.a1
pyrus_communis	pycom04g04110 pycom13g26680
rosa_chinensis	RchiOBHm_Chr3g0483651
rosa_laevigata	RLG00000023261
rosa_multiflora	Rmu_co8484139.1_g000001 Rmu_sc0008673.1_g000005
rosa_roxburghii	Rroxscaffold_6G00398150
rosa_rugosa	Rorug03G0207800 Rorug03G0207900 Rorug03G0208000
rosa_samantha	Rh3AG256200 Rh3BG292900 Rh3CG290700 Rh3DG286500
rosa_wichuraiana	Rw0G012020 Rw3G023140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	58, 286
AccII	CGCG	2 cut(s)	507, 534
AciI	CCGC	4 cut(s)	404, 507, 532, 534
AclWI	GGATC	3 cut(s)	72, 359, 372
AcoI	YGGCCR	2 cut(s)	529, 535
AcuI	CTGAAG	1 cut(s)	89
AcyI	GRCGYC	1 cut(s)	100
AdeI	CACNNNGTG	1 cut(s)	431
AfiI	CCNNNNNNNGG	1 cut(s)	403
AflII	CTTAAG	1 cut(s)	419
AgeI	ACCGGT	1 cut(s)	638
AgsI	TTSAA	1 cut(s)	118
AjuI	GAANNNNNNNTTGG	2 cut(s)	143, 175
AluBI	AGCT	2 cut(s)	167, 495
AluI	AGCT	2 cut(s)	167, 495
AlwI	GGATC	3 cut(s)	72, 359, 372
Ama87I	CYCGRG	1 cut(s)	396
AoxI	GGCC	5 cut(s)	7, 351, 520, 529, 535
ApeKI	GCWGC	3 cut(s)	167, 206, 492
AsiGI	ACCGGT	1 cut(s)	638
Asp700I	GAANNNNTTC	1 cut(s)	551
AspLEI	GCGC	1 cut(s)	507
AspS9I	GGNCC	3 cut(s)	8, 521, 636
AsuHPI	GGTGA	1 cut(s)	524
AsuII	TTCGAA	2 cut(s)	162, 555
AvaI	CYCGRG	1 cut(s)	396
AvaII	GGWCC	1 cut(s)	636
AxyI	CCTNAGG	1 cut(s)	632
BamHI	GGATCC	1 cut(s)	364
BbsI	GAAGAC	3 cut(s)	95, 123, 204
BbvI	GCAGC	3 cut(s)	154, 218, 504
BccI	CCATC	3 cut(s)	76, 190, 365
BcgI	CGANNNNNNTGC	2 cut(s)	213, 247
BciVI	GTATCC	1 cut(s)	598
BclI	TGATCA	1 cut(s)	324
BfaI	CTAG	1 cut(s)	12
BfrI	CTTAAG	1 cut(s)	419
BfuI	GTATCC	1 cut(s)	598
BglI	GCCNNNNNGGC	1 cut(s)	528
BisI	GCNGC	6 cut(s)	168, 207, 405, 493, 532, 535
BlsI	GCNGC	6 cut(s)	169, 208, 406, 494, 533, 536
Bme18I	GGWCC	1 cut(s)	636
BmeT110I	CYCGRG	1 cut(s)	396
BmgT120I	GGNCC	3 cut(s)	8, 521, 636
BmiI	GGNNCC	2 cut(s)	340, 366
BmrI	ACTGGG	1 cut(s)	66
BmsI	GCATC	3 cut(s)	320, 391, 531
BmuI	ACTGGG	1 cut(s)	66
BpiI	GAAGAC	3 cut(s)	95, 123, 204
Bpu14I	TTCGAA	2 cut(s)	162, 555
BpuEI	CTTGAG	1 cut(s)	560
Bsa29I	ATCGAT	1 cut(s)	121
BsaHI	GRCGYC	1 cut(s)	100
BsaJI	CCNNGG	2 cut(s)	334, 532
BsaWI	WCCGGW	2 cut(s)	19, 638
Bsc4I	CCNNNNNNNGG	1 cut(s)	403
Bse118I	RCCGGY	1 cut(s)	638
Bse1I	ACTGG	1 cut(s)	61
Bse21I	CCTNAGG	1 cut(s)	632
BseCI	ATCGAT	1 cut(s)	121
BseDI	CCNNGG	2 cut(s)	334, 532
BseGI	GGATG	4 cut(s)	16, 182, 311, 627
BseLI	CCNNNNNNNGG	1 cut(s)	403
BseMII	CTCAG	2 cut(s)	234, 623
BseNI	ACTGG	1 cut(s)	61
BseXI	GCAGC	3 cut(s)	154, 218, 504
Bsh1236I	CGCG	2 cut(s)	507, 534
Bsh1285I	CGRYCG	1 cut(s)	190
BshFI	GGCC	5 cut(s)	9, 353, 522, 531, 537
BshTI	ACCGGT	1 cut(s)	638
BshVI	ATCGAT	1 cut(s)	121
BsiEI	CGRYCG	1 cut(s)	190
BsiHKCI	CYCGRG	1 cut(s)	396
BsiSI	CCGG	2 cut(s)	20, 639
BslFI	GGGAC	1 cut(s)	64
BslI	CCNNNNNNNGG	1 cut(s)	403
BsmFI	GGGAC	1 cut(s)	64
BsnI	GGCC	5 cut(s)	9, 353, 522, 531, 537
BsoBI	CYCGRG	1 cut(s)	396
Bsp119I	TTCGAA	2 cut(s)	162, 555
Bsp143I	GATC	6 cut(s)	64, 122, 226, 324, 364, 514
BspACI	CCGC	4 cut(s)	404, 507, 532, 534
BspANI	GGCC	5 cut(s)	9, 353, 522, 531, 537
BspCNI	CTCAG	2 cut(s)	233, 624
BspDI	ATCGAT	1 cut(s)	121
BspFNI	CGCG	2 cut(s)	507, 534
BspLI	GGNNCC	2 cut(s)	340, 366
BspPI	GGATC	3 cut(s)	72, 359, 372
BspT104I	TTCGAA	2 cut(s)	162, 555
BspTI	CTTAAG	1 cut(s)	419
BsrFI	RCCGGY	1 cut(s)	638
BsrI	ACTGG	1 cut(s)	61
BssAI	RCCGGY	1 cut(s)	638
BssECI	CCNNGG	2 cut(s)	334, 532
BssMI	GATC	6 cut(s)	64, 122, 226, 324, 364, 514
BssNI	GRCGYC	1 cut(s)	100
BssT1I	CCWWGG	1 cut(s)	334
Bst4CI	ACNGT	2 cut(s)	191, 614
Bst6I	CTCTTC	2 cut(s)	141, 552
BstACI	GRCGYC	1 cut(s)	100
BstAFI	CTTAAG	1 cut(s)	419
BstBI	TTCGAA	2 cut(s)	162, 555
BstDEI	CTNAG	2 cut(s)	220, 632
BstDSI	CCRYGG	1 cut(s)	532
BstF5I	GGATG	4 cut(s)	16, 182, 311, 627
BstFNI	CGCG	2 cut(s)	507, 534
BstHHI	GCGC	1 cut(s)	507
BstKTI	GATC	6 cut(s)	67, 125, 229, 327, 367, 517
BstMBI	GATC	6 cut(s)	64, 122, 226, 324, 364, 514
BstMCI	CGRYCG	1 cut(s)	190
BstMWI	GCNNNNNNNGC	2 cut(s)	270, 528
BstUI	CGCG	2 cut(s)	507, 534
BstV1I	GCAGC	3 cut(s)	154, 218, 504
BstV2I	GAAGAC	3 cut(s)	95, 123, 204
BstX2I	RGATCY	2 cut(s)	64, 364
BstYI	RGATCY	2 cut(s)	64, 364
Bsu15I	ATCGAT	1 cut(s)	121
Bsu36I	CCTNAGG	1 cut(s)	632
BsuI	GTATCC	1 cut(s)	598
BsuRI	GGCC	5 cut(s)	9, 353, 522, 531, 537
BsuTUI	ATCGAT	1 cut(s)	121
BtgI	CCRYGG	1 cut(s)	532
BtsCI	GGATG	4 cut(s)	16, 182, 311, 627
BtsIMutI	CAGTG	1 cut(s)	619
CfoI	GCGC	1 cut(s)	507
Cfr10I	RCCGGY	1 cut(s)	638
Cfr13I	GGNCC	3 cut(s)	8, 521, 636
Cfr42I	CCGCGG	1 cut(s)	535
ClaI	ATCGAT	1 cut(s)	121
CseI	GACGC	2 cut(s)	89, 198
CspAI	ACCGGT	1 cut(s)	638
CspCI	CAANNNNNGTGG	2 cut(s)	490, 525
CviAII	CATG	2 cut(s)	91, 357
DdeI	CTNAG	2 cut(s)	220, 632
DpnI	GATC	6 cut(s)	66, 124, 228, 326, 366, 516
DpnII	GATC	6 cut(s)	64, 122, 226, 324, 364, 514
DraIII	CACNNNGTG	1 cut(s)	431
DrdI	GACNNNNNNGTC	2 cut(s)	58, 286
DseDI	GACNNNNNNGTC	2 cut(s)	58, 286
EaeI	YGGCCR	2 cut(s)	529, 535
Eam1104I	CTCTTC	2 cut(s)	141, 552
EarI	CTCTTC	2 cut(s)	141, 552
Eco130I	CCWWGG	1 cut(s)	334
Eco147I	AGGCCT	1 cut(s)	353
Eco47I	GGWCC	1 cut(s)	636
Eco57I	CTGAAG	1 cut(s)	89
Eco81I	CCTNAGG	1 cut(s)	632
Eco88I	CYCGRG	1 cut(s)	396
EcoT14I	CCWWGG	1 cut(s)	334
ErhI	CCWWGG	1 cut(s)	334
FaeI	CATG	2 cut(s)	94, 360
FaiI	YATR	4 cut(s)	92, 320, 358, 624
FaqI	GGGAC	1 cut(s)	64
FatI	CATG	2 cut(s)	90, 356
FbaI	TGATCA	1 cut(s)	324
Fnu4HI	GCNGC	6 cut(s)	168, 207, 405, 493, 532, 535
FokI	GGATG	4 cut(s)	3, 169, 298, 614
Fsp4HI	GCNGC	6 cut(s)	168, 207, 405, 493, 532, 535
FspBI	CTAG	1 cut(s)	12
GlaI	GCGC	1 cut(s)	506
GluI	GCNGC	6 cut(s)	168, 207, 405, 493, 532, 535
HaeIII	GGCC	5 cut(s)	9, 353, 522, 531, 537
HapII	CCGG	2 cut(s)	20, 639
HgaI	GACGC	2 cut(s)	89, 198
HhaI	GCGC	1 cut(s)	507
Hin1I	GRCGYC	1 cut(s)	100
Hin1II	CATG	2 cut(s)	94, 360
Hin6I	GCGC	1 cut(s)	505
HinP1I	GCGC	1 cut(s)	505
HinfI	GANTC	4 cut(s)	94, 118, 159, 298
HpaII	CCGG	2 cut(s)	20, 639
HphI	GGTGA	1 cut(s)	524
Hpy166II	GTNNAC	1 cut(s)	456
Hpy188I	TCNGA	4 cut(s)	64, 187, 235, 487
Hpy188III	TCNNGA	4 cut(s)	342, 368, 431, 631
Hpy8I	GTNNAC	1 cut(s)	456
HpyAV	CCTTC	1 cut(s)	355
HpyCH4III	ACNGT	2 cut(s)	191, 614
HpyCH4IV	ACGT	1 cut(s)	458
HpyCH4V	TGCA	4 cut(s)	70, 170, 492, 544
HpyF10VI	GCNNNNNNNGC	2 cut(s)	270, 528
HpyF3I	CTNAG	2 cut(s)	220, 632
HpySE526I	ACGT	1 cut(s)	458
Hsp92I	GRCGYC	1 cut(s)	100
Hsp92II	CATG	2 cut(s)	94, 360
HspAI	GCGC	1 cut(s)	505
Ksp22I	TGATCA	1 cut(s)	324
KspI	CCGCGG	1 cut(s)	535
Kzo9I	GATC	6 cut(s)	64, 122, 226, 324, 364, 514
LpnPI	CCDG	8 cut(s)	33, 42, 287, 292, 355, 381, 432, 551
Lsp1109I	GCAGC	3 cut(s)	154, 218, 504
LweI	GCATC	3 cut(s)	320, 391, 531
MaeI	CTAG	1 cut(s)	12
MaeII	ACGT	1 cut(s)	458
MaeIII	GTNAC	3 cut(s)	386, 409, 423
MalI	GATC	6 cut(s)	66, 124, 228, 326, 366, 516
MboI	GATC	6 cut(s)	64, 122, 226, 324, 364, 514
MboII	GAAGA	8 cut(s)	95, 117, 123, 128, 204, 211, 357, 569
MflI	RGATCY	2 cut(s)	64, 364
MluCI	AATT	2 cut(s)	72, 597
MlyI	GAGTC	1 cut(s)	103
MmeI	TCCRAC	3 cut(s)	17, 42, 210
MnlI	CCTC	9 cut(s)	22, 33, 121, 227, 301, 364, 427, 553, 627
MroXI	GAANNNNTTC	1 cut(s)	551
MseI	TTAA	1 cut(s)	420
MspA1I	CMGCKG	1 cut(s)	534
MspCI	CTTAAG	1 cut(s)	419
MspI	CCGG	2 cut(s)	20, 639
MvnI	CGCG	2 cut(s)	507, 534
MwoI	GCNNNNNNNGC	2 cut(s)	270, 528
NdeII	GATC	6 cut(s)	64, 122, 226, 324, 364, 514
NlaIII	CATG	2 cut(s)	94, 360
NlaIV	GGNNCC	2 cut(s)	340, 366
NmuCI	GTSAC	2 cut(s)	409, 423
NspV	TTCGAA	2 cut(s)	162, 555
PceI	AGGCCT	1 cut(s)	353
PdmI	GAANNNNTTC	1 cut(s)	551
PfeI	GAWTC	3 cut(s)	118, 159, 298
PinAI	ACCGGT	1 cut(s)	638
PkrI	GCNGC	6 cut(s)	169, 208, 406, 494, 533, 536
PleI	GAGTC	1 cut(s)	102
PpsI	GAGTC	1 cut(s)	102
PspN4I	GGNNCC	2 cut(s)	340, 366
PspPI	GGNCC	3 cut(s)	8, 521, 636
PsuI	RGATCY	2 cut(s)	64, 364
SacII	CCGCGG	1 cut(s)	535
SaqAI	TTAA	1 cut(s)	420
SatI	GCNGC	6 cut(s)	168, 207, 405, 493, 532, 535
Sau3AI	GATC	6 cut(s)	64, 122, 226, 324, 364, 514
Sau96I	GGNCC	3 cut(s)	8, 521, 636
SchI	GAGTC	1 cut(s)	103
SetI	ASST	6 cut(s)	169, 306, 340, 461, 497, 582
SfaNI	GCATC	3 cut(s)	320, 391, 531
SfiI	GGCCNNNNNGGCC	1 cut(s)	528
Sfr303I	CCGCGG	1 cut(s)	535
SfuI	TTCGAA	2 cut(s)	162, 555
SgrBI	CCGCGG	1 cut(s)	535
SinI	GGWCC	1 cut(s)	636
SmlI	CTYRAG	2 cut(s)	419, 575
SmoI	CTYRAG	2 cut(s)	419, 575
Sse9I	AATT	2 cut(s)	72, 597
SseBI	AGGCCT	1 cut(s)	353
SsiI	CCGC	4 cut(s)	404, 507, 532, 534
SspMI	CTAG	1 cut(s)	12
StuI	AGGCCT	1 cut(s)	353
StyI	CCWWGG	1 cut(s)	334
TaaI	ACNGT	2 cut(s)	191, 614
TaiI	ACGT	1 cut(s)	461
TaqI	TCGA	4 cut(s)	121, 162, 296, 555
TasI	AATT	2 cut(s)	72, 597
TauI	GCSGC	3 cut(s)	407, 534, 537
TfiI	GAWTC	3 cut(s)	118, 159, 298
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TscAI	CASTG	1 cut(s)	619
TseFI	GTSAC	2 cut(s)	409, 423
TseI	GCWGC	3 cut(s)	167, 206, 492
Tsp45I	GTSAC	2 cut(s)	409, 423
TspDTI	ATGAA	1 cut(s)	611
TspRI	CASTG	1 cut(s)	619
Vha464I	CTTAAG	1 cut(s)	419
VpaK11BI	GGWCC	1 cut(s)	636
XmnI	GAANNNNTTC	1 cut(s)	551
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.