Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0009213

Physical Location & Seq

Genomic Coordinates Forward (+)

29370820 .. 29373270

Gene Structure 2451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG292900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGTCCTCATCGAATCAGGTCAGGGCATCCCACATACTGATCAAGCACCAAGGTTCCAGAAGAAAGGCCTCATGGAAGGATCCAGATGGTGTTGTTATCAGTAACACCACCCGAGATGCGGCTGTCACTCAACTCAAGTCACTTCGTGAGGACATTGTTTCTGGCAAGTTCACGTTTGACAATGTTGCTACTCGCTTCTCTGATTGCAGCTCTGCCAAGCGTGGTGGTGATCTTGGCCCTTTTGGCCGCGGCCAGATGCAGAAGCCTTTTGAGGAGGCAACATTCTCTCTCAAGGTTGGGGAGATAAGTGAAATTGTGGATACAGACAGTGGAGTTCATATCATCCTGAGGACCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0005911 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009909 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0030054 GO:0032879 GO:0032880 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051726 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04622 map04622

Pfam Domains

Protein Families

Rotamase

Protein Analysis

119

Amino Acids

12.97

Weight (kDa)

9.3

Isoelectric Point (pI)

43.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rotamase_3	PF13616	3 - 115	5e-20	PPIC-type PPIASE domain
Rotamase	PF00639	11 - 117	1.4e-24	PPIC-type PPIASE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18040
fragaria_vesca	FvH4_6g24550
malus_domestica	MD04G1047200.v1.1 MD08G1077500.v1.1
prunus_persica	Prupe.1G202600_v2.0.a1 Prupe.1G202600_v2.0.a1
pyrus_communis	pycom04g04110 pycom13g26680
rosa_chinensis	RchiOBHm_Chr3g0483651
rosa_laevigata	RLG00000023261
rosa_multiflora	Rmu_co8484139.1_g000001 Rmu_sc0008673.1_g000005
rosa_roxburghii	Rroxscaffold_6G00398150
rosa_rugosa	Rorug03G0207800 Rorug03G0207900 Rorug03G0208000
rosa_samantha	Rh3AG256200 Rh3BG292900 Rh3CG290700 Rh3DG286500
rosa_wichuraiana	Rw0G012020 Rw3G023140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	249
AciI	CCGC	3 cut(s)	119, 247, 249
AclWI	GGATC	2 cut(s)	74, 87
AcoI	YGGCCR	2 cut(s)	244, 250
AdeI	CACNNNGTG	1 cut(s)	146
AfiI	CCNNNNNNNGG	1 cut(s)	118
AgeI	ACCGGT	1 cut(s)	353
AluBI	AGCT	1 cut(s)	210
AluI	AGCT	1 cut(s)	210
AlwI	GGATC	2 cut(s)	74, 87
Ama87I	CYCGRG	1 cut(s)	111
AoxI	GGCC	4 cut(s)	66, 235, 244, 250
ApeKI	GCWGC	1 cut(s)	207
AsiGI	ACCGGT	1 cut(s)	353
AspS9I	GGNCC	2 cut(s)	236, 351
AsuHPI	GGTGA	1 cut(s)	239
AvaI	CYCGRG	1 cut(s)	111
AvaII	GGWCC	1 cut(s)	351
AxyI	CCTNAGG	1 cut(s)	347
BamHI	GGATCC	1 cut(s)	79
BbvI	GCAGC	1 cut(s)	219
BccI	CCATC	1 cut(s)	80
BciVI	GTATCC	1 cut(s)	313
BclI	TGATCA	1 cut(s)	39
BfuI	GTATCC	1 cut(s)	313
BglI	GCCNNNNNGGC	1 cut(s)	243
BisI	GCNGC	4 cut(s)	120, 208, 247, 250
BlsI	GCNGC	4 cut(s)	121, 209, 248, 251
Bme18I	GGWCC	1 cut(s)	351
BmeT110I	CYCGRG	1 cut(s)	111
BmgT120I	GGNCC	2 cut(s)	236, 351
BmiI	GGNNCC	2 cut(s)	55, 81
BmsI	GCATC	3 cut(s)	35, 106, 246
BpuEI	CTTGAG	2 cut(s)	119, 275
BsaJI	CCNNGG	2 cut(s)	49, 247
BsaWI	WCCGGW	1 cut(s)	353
Bsc4I	CCNNNNNNNGG	1 cut(s)	118
Bse118I	RCCGGY	1 cut(s)	353
Bse21I	CCTNAGG	1 cut(s)	347
BseDI	CCNNGG	2 cut(s)	49, 247
BseGI	GGATG	2 cut(s)	26, 342
BseLI	CCNNNNNNNGG	1 cut(s)	118
BseMII	CTCAG	1 cut(s)	338
BseRI	GAGGAG	1 cut(s)	287
BseXI	GCAGC	1 cut(s)	219
Bsh1236I	CGCG	1 cut(s)	249
BshFI	GGCC	4 cut(s)	68, 237, 246, 252
BshTI	ACCGGT	1 cut(s)	353
BsiHKCI	CYCGRG	1 cut(s)	111
BsiSI	CCGG	1 cut(s)	354
BslI	CCNNNNNNNGG	1 cut(s)	118
BsnI	GGCC	4 cut(s)	68, 237, 246, 252
BsoBI	CYCGRG	1 cut(s)	111
Bsp143I	GATC	3 cut(s)	39, 79, 229
BspACI	CCGC	3 cut(s)	119, 247, 249
BspANI	GGCC	4 cut(s)	68, 237, 246, 252
BspCNI	CTCAG	1 cut(s)	339
BspFNI	CGCG	1 cut(s)	249
BspLI	GGNNCC	2 cut(s)	55, 81
BspPI	GGATC	2 cut(s)	74, 87
BsrFI	RCCGGY	1 cut(s)	353
BssAI	RCCGGY	1 cut(s)	353
BssECI	CCNNGG	2 cut(s)	49, 247
BssMI	GATC	3 cut(s)	39, 79, 229
BssT1I	CCWWGG	1 cut(s)	49
Bst4CI	ACNGT	1 cut(s)	329
BstDEI	CTNAG	1 cut(s)	347
BstDSI	CCRYGG	1 cut(s)	247
BstF5I	GGATG	2 cut(s)	26, 342
BstFNI	CGCG	1 cut(s)	249
BstKTI	GATC	3 cut(s)	42, 82, 232
BstMBI	GATC	3 cut(s)	39, 79, 229
BstMWI	GCNNNNNNNGC	1 cut(s)	243
BstUI	CGCG	1 cut(s)	249
BstV1I	GCAGC	1 cut(s)	219
BstX2I	RGATCY	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	79
Bsu36I	CCTNAGG	1 cut(s)	347
BsuI	GTATCC	1 cut(s)	313
BsuRI	GGCC	4 cut(s)	68, 237, 246, 252
BtgI	CCRYGG	1 cut(s)	247
BtsCI	GGATG	2 cut(s)	26, 342
BtsIMutI	CAGTG	1 cut(s)	334
Cfr10I	RCCGGY	1 cut(s)	353
Cfr13I	GGNCC	2 cut(s)	236, 351
Cfr42I	CCGCGG	1 cut(s)	250
CspAI	ACCGGT	1 cut(s)	353
CspCI	CAANNNNNGTGG	2 cut(s)	205, 240
CviAII	CATG	1 cut(s)	72
CviJI	RGCY	7 cut(s)	68, 122, 210, 237, 246, 252, 265
CviKI_1	RGCY	7 cut(s)	68, 122, 210, 237, 246, 252, 265
DdeI	CTNAG	1 cut(s)	347
DpnI	GATC	3 cut(s)	41, 81, 231
DpnII	GATC	3 cut(s)	39, 79, 229
DraIII	CACNNNGTG	1 cut(s)	146
EaeI	YGGCCR	2 cut(s)	244, 250
Eco130I	CCWWGG	1 cut(s)	49
Eco147I	AGGCCT	1 cut(s)	68
Eco47I	GGWCC	1 cut(s)	351
Eco81I	CCTNAGG	1 cut(s)	347
Eco88I	CYCGRG	1 cut(s)	111
EcoT14I	CCWWGG	1 cut(s)	49
ErhI	CCWWGG	1 cut(s)	49
FaeI	CATG	1 cut(s)	75
FaiI	YATR	3 cut(s)	35, 73, 339
FatI	CATG	1 cut(s)	71
FbaI	TGATCA	1 cut(s)	39
Fnu4HI	GCNGC	4 cut(s)	120, 208, 247, 250
FokI	GGATG	2 cut(s)	13, 329
Fsp4HI	GCNGC	4 cut(s)	120, 208, 247, 250
GluI	GCNGC	4 cut(s)	120, 208, 247, 250
HaeIII	GGCC	4 cut(s)	68, 237, 246, 252
HapII	CCGG	1 cut(s)	354
Hin1II	CATG	1 cut(s)	75
HinfI	GANTC	1 cut(s)	13
HpaII	CCGG	1 cut(s)	354
HphI	GGTGA	1 cut(s)	239
Hpy166II	GTNNAC	1 cut(s)	171
Hpy188I	TCNGA	1 cut(s)	202
Hpy188III	TCNNGA	4 cut(s)	57, 83, 146, 346
Hpy8I	GTNNAC	1 cut(s)	171
HpyAV	CCTTC	1 cut(s)	70
HpyCH4III	ACNGT	1 cut(s)	329
HpyCH4IV	ACGT	1 cut(s)	173
HpyCH4V	TGCA	2 cut(s)	207, 259
HpyF10VI	GCNNNNNNNGC	1 cut(s)	243
HpyF3I	CTNAG	1 cut(s)	347
HpySE526I	ACGT	1 cut(s)	173
Hsp92II	CATG	1 cut(s)	75
Ksp22I	TGATCA	1 cut(s)	39
KspI	CCGCGG	1 cut(s)	250
Kzo9I	GATC	3 cut(s)	39, 79, 229
LpnPI	CCDG	6 cut(s)	2, 7, 70, 96, 147, 266
Lsp1109I	GCAGC	1 cut(s)	219
LweI	GCATC	3 cut(s)	35, 106, 246
MaeII	ACGT	1 cut(s)	173
MaeIII	GTNAC	3 cut(s)	101, 124, 138
MalI	GATC	3 cut(s)	41, 81, 231
MboI	GATC	3 cut(s)	39, 79, 229
MboII	GAAGA	1 cut(s)	72
MflI	RGATCY	1 cut(s)	79
MluCI	AATT	1 cut(s)	312
MnlI	CCTC	6 cut(s)	16, 79, 142, 265, 268, 342
MspA1I	CMGCKG	1 cut(s)	249
MspI	CCGG	1 cut(s)	354
MvnI	CGCG	1 cut(s)	249
MwoI	GCNNNNNNNGC	1 cut(s)	243
NdeII	GATC	3 cut(s)	39, 79, 229
NlaIII	CATG	1 cut(s)	75
NlaIV	GGNNCC	2 cut(s)	55, 81
NmuCI	GTSAC	2 cut(s)	124, 138
PceI	AGGCCT	1 cut(s)	68
PfeI	GAWTC	1 cut(s)	13
PinAI	ACCGGT	1 cut(s)	353
PkrI	GCNGC	4 cut(s)	121, 209, 248, 251
PspN4I	GGNNCC	2 cut(s)	55, 81
PspPI	GGNCC	2 cut(s)	236, 351
PsuI	RGATCY	1 cut(s)	79
SacII	CCGCGG	1 cut(s)	250
SatI	GCNGC	4 cut(s)	120, 208, 247, 250
Sau3AI	GATC	3 cut(s)	39, 79, 229
Sau96I	GGNCC	2 cut(s)	236, 351
SetI	ASST	5 cut(s)	21, 55, 176, 212, 297
SfaNI	GCATC	3 cut(s)	35, 106, 246
SfiI	GGCCNNNNNGGCC	1 cut(s)	243
Sfr303I	CCGCGG	1 cut(s)	250
SgrBI	CCGCGG	1 cut(s)	250
SinI	GGWCC	1 cut(s)	351
SmlI	CTYRAG	2 cut(s)	134, 290
SmoI	CTYRAG	2 cut(s)	134, 290
Sse9I	AATT	1 cut(s)	312
SseBI	AGGCCT	1 cut(s)	68
SsiI	CCGC	3 cut(s)	119, 247, 249
StuI	AGGCCT	1 cut(s)	68
StyI	CCWWGG	1 cut(s)	49
TaaI	ACNGT	1 cut(s)	329
TaiI	ACGT	1 cut(s)	176
TaqI	TCGA	1 cut(s)	11
TasI	AATT	1 cut(s)	312
TauI	GCSGC	3 cut(s)	122, 249, 252
TfiI	GAWTC	1 cut(s)	13
TscAI	CASTG	1 cut(s)	334
TseFI	GTSAC	2 cut(s)	124, 138
TseI	GCWGC	1 cut(s)	207
Tsp45I	GTSAC	2 cut(s)	124, 138
TspDTI	ATGAA	1 cut(s)	326
TspRI	CASTG	1 cut(s)	334
VpaK11BI	GGWCC	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.