Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0009213

Physical Location & Seq

Genomic Coordinates Forward (+)

18507228 .. 18507488

Gene Structure 261 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0208000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGAAAAGGAGAACAGATAAGTCGAAGGAAAATTTTTCGGAGGTAAGTCGAGTTTTAGATGATTGTAAAGATTATCTTTCTTCTTTTCAATCATGTAGAATAAGACATATCTTCCATGAAGCAAATGGTGTTGCACATAGGCTTGCACACCTTGCTAGTGTTGCTAGGCTGGATGATGTATGGTTAGAGGAGACTCCTGCTATTATTCAGGATGTACTCTACGAGGATTATTGTAATCTTTCTAATGTAGCACGGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0005911 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009909 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0030054 GO:0032879 GO:0032880 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051726 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04622 map04622

Pfam Domains

Protein Families

Rotamase

Protein Analysis

86

Amino Acids

9.95

Weight (kDa)

6.04

Isoelectric Point (pI)

46.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	7 - 51	3.3e-07	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0009213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18040
fragaria_vesca	FvH4_6g24550
malus_domestica	MD04G1047200.v1.1 MD08G1077500.v1.1
prunus_persica	Prupe.1G202600_v2.0.a1 Prupe.1G202600_v2.0.a1
pyrus_communis	pycom04g04110 pycom13g26680
rosa_chinensis	RchiOBHm_Chr3g0483651
rosa_laevigata	RLG00000023261
rosa_multiflora	Rmu_co8484139.1_g000001 Rmu_sc0008673.1_g000005
rosa_roxburghii	Rroxscaffold_6G00398150
rosa_rugosa	Rorug03G0207800 Rorug03G0207900 Rorug03G0208000
rosa_samantha	Rh3AG256200 Rh3BG292900 Rh3CG290700 Rh3DG286500
rosa_wichuraiana	Rw0G012020 Rw3G023140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	31
AfaI	GTAC	1 cut(s)	216
AgsI	TTSAA	1 cut(s)	89
Alw26I	GTCTC	1 cut(s)	185
ApoI	RAATTY	1 cut(s)	31
BcoDI	GTCTC	1 cut(s)	185
BfaI	CTAG	2 cut(s)	156, 165
BseGI	GGATG	2 cut(s)	178, 217
BseRI	GAGGAG	1 cut(s)	203
BsmAI	GTCTC	1 cut(s)	185
BstAPI	GCANNNNNTGC	1 cut(s)	152
BstC8I	GCNNGC	1 cut(s)	144
BstF5I	GGATG	2 cut(s)	178, 217
BstMAI	GTCTC	1 cut(s)	185
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 161
BtsCI	GGATG	2 cut(s)	178, 217
Cac8I	GCNNGC	1 cut(s)	144
Csp6I	GTAC	1 cut(s)	215
CviAII	CATG	2 cut(s)	93, 116
CviJI	RGCY	2 cut(s)	142, 169
CviKI_1	RGCY	2 cut(s)	142, 169
CviQI	GTAC	1 cut(s)	215
FaeI	CATG	2 cut(s)	96, 119
FaiI	YATR	5 cut(s)	94, 108, 117, 138, 181
FalI	AAGNNNNNCTT	2 cut(s)	60, 92
FatI	CATG	2 cut(s)	92, 115
FokI	GGATG	2 cut(s)	185, 224
FspBI	CTAG	2 cut(s)	156, 165
Hin1II	CATG	2 cut(s)	96, 119
HinfI	GANTC	1 cut(s)	193
Hpy188I	TCNGA	1 cut(s)	40
Hpy188III	TCNNGA	1 cut(s)	209
HpyAV	CCTTC	1 cut(s)	19
HpyCH4V	TGCA	2 cut(s)	134, 146
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 161
Hsp92II	CATG	2 cut(s)	96, 119
LpnPI	CCDG	3 cut(s)	155, 194, 210
MaeI	CTAG	2 cut(s)	156, 165
MboII	GAAGA	2 cut(s)	72, 103
MluCI	AATT	1 cut(s)	31
MlyI	GAGTC	1 cut(s)	187
MnlI	CCTC	3 cut(s)	34, 181, 217
MseI	TTAA	1 cut(s)	259
MwoI	GCNNNNNNNGC	2 cut(s)	152, 161
NlaIII	CATG	2 cut(s)	96, 119
PleI	GAGTC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	187
RsaI	GTAC	1 cut(s)	216
RsaNI	GTAC	1 cut(s)	215
SaqAI	TTAA	1 cut(s)	259
SchI	GAGTC	1 cut(s)	187
SetI	ASST	2 cut(s)	45, 153
Sse9I	AATT	1 cut(s)	31
SspMI	CTAG	2 cut(s)	156, 165
TaqI	TCGA	2 cut(s)	23, 49
TasI	AATT	1 cut(s)	31
TatI	WGTACW	1 cut(s)	214
Tru1I	TTAA	1 cut(s)	259
Tru9I	TTAA	1 cut(s)	259
TspDTI	ATGAA	2 cut(s)	17, 132
XapI	RAATTY	1 cut(s)	31
XcmI	CCANNNNNNNNNTGG	1 cut(s)	122
XspI	CTAG	2 cut(s)	156, 165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.