Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0009213

Physical Location & Seq

Genomic Coordinates Forward (+)

18506407 .. 18506625

Gene Structure 219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0207900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGGTTGTCCTCTCCTTACTAGGTCTTGAAGTTTTGGATCCACAAGCATTCCTATTGCTGAATGTTTTGCTCTTAAGGATGGCCTGCAGGCTGCTATTAGATTCAGCTATTCTAAGATTCCAGTCGAAGGTGATTATTCCTTGGGTTGTGTCAATGGTGTTTGTGACGTTCCTTGGTGTCTCAAATCCCTTATTCGTGATGTCAAGAACATGGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0005911 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009909 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0030054 GO:0032879 GO:0032880 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051726 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04622 map04622

Pfam Domains

Protein Families

Rotamase

Protein Analysis

72

Amino Acids

8.14

Weight (kDa)

9.49

Isoelectric Point (pI)

40.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18040
fragaria_vesca	FvH4_6g24550
malus_domestica	MD04G1047200.v1.1 MD08G1077500.v1.1
prunus_persica	Prupe.1G202600_v2.0.a1 Prupe.1G202600_v2.0.a1
pyrus_communis	pycom04g04110 pycom13g26680
rosa_chinensis	RchiOBHm_Chr3g0483651
rosa_laevigata	RLG00000023261
rosa_multiflora	Rmu_co8484139.1_g000001 Rmu_sc0008673.1_g000005
rosa_roxburghii	Rroxscaffold_6G00398150
rosa_rugosa	Rorug03G0207800 Rorug03G0207900 Rorug03G0208000
rosa_samantha	Rh3AG256200 Rh3BG292900 Rh3CG290700 Rh3DG286500
rosa_wichuraiana	Rw0G012020 Rw3G023140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	32, 45
AfiI	CCNNNNNNNGG	1 cut(s)	127
AflII	CTTAAG	1 cut(s)	73
AgsI	TTSAA	1 cut(s)	29
AluBI	AGCT	1 cut(s)	107
AluI	AGCT	1 cut(s)	107
Alw26I	GTCTC	1 cut(s)	184
AlwI	GGATC	2 cut(s)	32, 45
AoxI	GGCC	2 cut(s)	81, 212
ApeKI	GCWGC	1 cut(s)	91
AsuHPI	GGTGA	1 cut(s)	142
BamHI	GGATCC	1 cut(s)	37
BbvI	GCAGC	1 cut(s)	78
BccI	CCATC	1 cut(s)	73
BcoDI	GTCTC	1 cut(s)	184
BfaI	CTAG	1 cut(s)	20
BfmI	CTRYAG	1 cut(s)	85
BfrI	CTTAAG	1 cut(s)	73
BisI	GCNGC	1 cut(s)	92
BlsI	GCNGC	1 cut(s)	93
BmiI	GGNNCC	1 cut(s)	39
BsaJI	CCNNGG	2 cut(s)	140, 172
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse1I	ACTGG	1 cut(s)	121
BseDI	CCNNGG	2 cut(s)	140, 172
BseGI	GGATG	1 cut(s)	84
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseNI	ACTGG	1 cut(s)	121
BseXI	GCAGC	1 cut(s)	78
BshFI	GGCC	2 cut(s)	83, 214
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmAI	GTCTC	1 cut(s)	184
BsmI	GAATGC	1 cut(s)	47
BsnI	GGCC	2 cut(s)	83, 214
Bsp143I	GATC	1 cut(s)	37
BspANI	GGCC	2 cut(s)	83, 214
BspLI	GGNNCC	1 cut(s)	39
BspMAI	CTGCAG	1 cut(s)	89
BspPI	GGATC	2 cut(s)	32, 45
BspTI	CTTAAG	1 cut(s)	73
BsrI	ACTGG	1 cut(s)	121
BssECI	CCNNGG	2 cut(s)	140, 172
BssMI	GATC	1 cut(s)	37
BssT1I	CCWWGG	2 cut(s)	140, 172
BstAFI	CTTAAG	1 cut(s)	73
BstC8I	GCNNGC	2 cut(s)	85, 89
BstDEI	CTNAG	1 cut(s)	113
BstF5I	GGATG	1 cut(s)	84
BstKTI	GATC	1 cut(s)	40
BstMAI	GTCTC	1 cut(s)	184
BstMBI	GATC	1 cut(s)	37
BstSFI	CTRYAG	1 cut(s)	85
BstV1I	GCAGC	1 cut(s)	78
BstX2I	RGATCY	1 cut(s)	37
BstYI	RGATCY	1 cut(s)	37
BsuRI	GGCC	2 cut(s)	83, 214
BtsCI	GGATG	1 cut(s)	84
Cac8I	GCNNGC	2 cut(s)	85, 89
CviAII	CATG	1 cut(s)	210
CviJI	RGCY	4 cut(s)	83, 91, 107, 214
CviKI_1	RGCY	4 cut(s)	83, 91, 107, 214
DdeI	CTNAG	1 cut(s)	113
DpnI	GATC	1 cut(s)	39
DpnII	GATC	1 cut(s)	37
Eco130I	CCWWGG	2 cut(s)	140, 172
EcoT14I	CCWWGG	2 cut(s)	140, 172
ErhI	CCWWGG	2 cut(s)	140, 172
FaeI	CATG	1 cut(s)	213
FaiI	YATR	1 cut(s)	211
FatI	CATG	1 cut(s)	209
Fnu4HI	GCNGC	1 cut(s)	92
FokI	GGATG	1 cut(s)	91
Fsp4HI	GCNGC	1 cut(s)	92
FspBI	CTAG	1 cut(s)	20
GluI	GCNGC	1 cut(s)	92
HaeIII	GGCC	2 cut(s)	83, 214
Hin1II	CATG	1 cut(s)	213
HinfI	GANTC	2 cut(s)	101, 117
HphI	GGTGA	1 cut(s)	142
Hpy188III	TCNNGA	3 cut(s)	26, 196, 204
HpyAV	CCTTC	1 cut(s)	121
HpyCH4IV	ACGT	1 cut(s)	167
HpyCH4V	TGCA	1 cut(s)	87
HpyF3I	CTNAG	1 cut(s)	113
HpySE526I	ACGT	1 cut(s)	167
Hsp92II	CATG	1 cut(s)	213
Kzo9I	GATC	1 cut(s)	37
LpnPI	CCDG	3 cut(s)	73, 97, 134
Lsp1109I	GCAGC	1 cut(s)	78
MaeI	CTAG	1 cut(s)	20
MaeII	ACGT	1 cut(s)	167
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	1 cut(s)	39
MboI	GATC	1 cut(s)	37
MflI	RGATCY	1 cut(s)	37
MnlI	CCTC	1 cut(s)	20
MseI	TTAA	2 cut(s)	74, 217
MspCI	CTTAAG	1 cut(s)	73
Mva1269I	GAATGC	1 cut(s)	47
NdeII	GATC	1 cut(s)	37
NlaIII	CATG	1 cut(s)	213
NlaIV	GGNNCC	1 cut(s)	39
NmuCI	GTSAC	1 cut(s)	163
PctI	GAATGC	1 cut(s)	47
PfeI	GAWTC	2 cut(s)	101, 117
PkrI	GCNGC	1 cut(s)	93
PspN4I	GGNNCC	1 cut(s)	39
PstI	CTGCAG	1 cut(s)	89
PsuI	RGATCY	1 cut(s)	37
SaqAI	TTAA	2 cut(s)	74, 217
SatI	GCNGC	1 cut(s)	92
Sau3AI	GATC	1 cut(s)	37
SbfI	CCTGCAGG	1 cut(s)	89
SdaI	CCTGCAGG	1 cut(s)	89
SetI	ASST	4 cut(s)	25, 109, 132, 170
SfcI	CTRYAG	1 cut(s)	85
SgeI	CNNG	9 cut(s)	32, 38, 56, 96, 100, 133, 153, 185, 208
SmlI	CTYRAG	1 cut(s)	73
SmoI	CTYRAG	1 cut(s)	73
Sse8387I	CCTGCAGG	1 cut(s)	89
SspMI	CTAG	1 cut(s)	20
StyI	CCWWGG	2 cut(s)	140, 172
TaiI	ACGT	1 cut(s)	170
TaqI	TCGA	1 cut(s)	125
TfiI	GAWTC	2 cut(s)	101, 117
Tru1I	TTAA	2 cut(s)	74, 217
Tru9I	TTAA	2 cut(s)	74, 217
TseFI	GTSAC	1 cut(s)	163
TseI	GCWGC	1 cut(s)	91
Tsp45I	GTSAC	1 cut(s)	163
Vha464I	CTTAAG	1 cut(s)	73
XspI	CTAG	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.