Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0009213

Physical Location & Seq

Genomic Coordinates Reverse (-)

19978785 .. 19981440

Gene Structure 2656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00398150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGTCCTCATCGAATCAGGTCAGGGCATCCCACATACTGATCAAGCACCAAGGTTCCAGAAGAAAGGCCTCATGGAAGGATCCAGATGGTGTTGTTATCAGTAACACCACCCGAGATGCAGCTGTCACTCAACTCAAGTCACTTCGTGAGGACATTGTTTCTGGCAAGTTCACGTTTGACAATGTTGCTACTCGCTTCTCTGATTGCAGCTCTGCCAAGCGTGGTGGTGATCTCGGCCCTTTTGGCCGTGGCCAGATGCAGAAGCCTTTCGAAGAGGCAACATTCTCGCTCAAGGTTGGGGAGATAAGTGAAATTGTGGATACCGACAGTGGAGTTCATATCATTCTGAGGACCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0005911 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009909 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0030054 GO:0032879 GO:0032880 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051726 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04622 map04622

Pfam Domains

Protein Families

Rotamase

Protein Analysis

119

Amino Acids

12.97

Weight (kDa)

9.3

Isoelectric Point (pI)

43.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rotamase_3	PF13616	3 - 115	5e-20	PPIC-type PPIASE domain
Rotamase	PF00639	11 - 117	1.4e-24	PPIC-type PPIASE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18040
fragaria_vesca	FvH4_6g24550
malus_domestica	MD04G1047200.v1.1 MD08G1077500.v1.1
prunus_persica	Prupe.1G202600_v2.0.a1 Prupe.1G202600_v2.0.a1
pyrus_communis	pycom04g04110 pycom13g26680
rosa_chinensis	RchiOBHm_Chr3g0483651
rosa_laevigata	RLG00000023261
rosa_multiflora	Rmu_co8484139.1_g000001 Rmu_sc0008673.1_g000005
rosa_roxburghii	Rroxscaffold_6G00398150
rosa_rugosa	Rorug03G0207800 Rorug03G0207900 Rorug03G0208000
rosa_samantha	Rh3AG256200 Rh3BG292900 Rh3CG290700 Rh3DG286500
rosa_wichuraiana	Rw0G012020 Rw3G023140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	74, 87
AcoI	YGGCCR	2 cut(s)	244, 250
AdeI	CACNNNGTG	1 cut(s)	146
AgeI	ACCGGT	1 cut(s)	353
AluBI	AGCT	2 cut(s)	122, 210
AluI	AGCT	2 cut(s)	122, 210
AlwI	GGATC	2 cut(s)	74, 87
Ama87I	CYCGRG	1 cut(s)	111
AoxI	GGCC	4 cut(s)	66, 235, 244, 250
ApeKI	GCWGC	2 cut(s)	119, 207
AsiGI	ACCGGT	1 cut(s)	353
Asp700I	GAANNNNTTC	1 cut(s)	266
AspS9I	GGNCC	2 cut(s)	236, 351
AsuHPI	GGTGA	1 cut(s)	239
AsuII	TTCGAA	1 cut(s)	270
AvaI	CYCGRG	1 cut(s)	111
AvaII	GGWCC	1 cut(s)	351
BalI	TGGCCA	1 cut(s)	252
BamHI	GGATCC	1 cut(s)	79
BbvI	GCAGC	2 cut(s)	131, 219
BccI	CCATC	1 cut(s)	80
BceAI	ACGGC	1 cut(s)	231
BcgI	CGANNNNNNTGC	2 cut(s)	267, 301
BciVI	GTATCC	1 cut(s)	313
BclI	TGATCA	1 cut(s)	39
BfuI	GTATCC	1 cut(s)	313
BglI	GCCNNNNNGGC	1 cut(s)	243
BisI	GCNGC	2 cut(s)	120, 208
BlsI	GCNGC	2 cut(s)	121, 209
Bme18I	GGWCC	1 cut(s)	351
BmeT110I	CYCGRG	1 cut(s)	111
BmgT120I	GGNCC	2 cut(s)	236, 351
BmiI	GGNNCC	2 cut(s)	55, 81
BmsI	GCATC	3 cut(s)	35, 106, 246
Bpu14I	TTCGAA	1 cut(s)	270
BpuEI	CTTGAG	2 cut(s)	119, 275
BsaJI	CCNNGG	2 cut(s)	49, 247
BsaWI	WCCGGW	1 cut(s)	353
Bse118I	RCCGGY	1 cut(s)	353
BseDI	CCNNGG	2 cut(s)	49, 247
BseGI	GGATG	1 cut(s)	26
BseMII	CTCAG	1 cut(s)	338
BseXI	GCAGC	2 cut(s)	131, 219
BshFI	GGCC	4 cut(s)	68, 237, 246, 252
BshTI	ACCGGT	1 cut(s)	353
BsiHKCI	CYCGRG	1 cut(s)	111
BsiSI	CCGG	1 cut(s)	354
BsnI	GGCC	4 cut(s)	68, 237, 246, 252
BsoBI	CYCGRG	1 cut(s)	111
Bsp119I	TTCGAA	1 cut(s)	270
Bsp143I	GATC	3 cut(s)	39, 79, 229
BspANI	GGCC	4 cut(s)	68, 237, 246, 252
BspCNI	CTCAG	1 cut(s)	339
BspLI	GGNNCC	2 cut(s)	55, 81
BspPI	GGATC	2 cut(s)	74, 87
BspT104I	TTCGAA	1 cut(s)	270
BsrFI	RCCGGY	1 cut(s)	353
BssAI	RCCGGY	1 cut(s)	353
BssECI	CCNNGG	2 cut(s)	49, 247
BssMI	GATC	3 cut(s)	39, 79, 229
BssT1I	CCWWGG	1 cut(s)	49
Bst4CI	ACNGT	1 cut(s)	329
Bst6I	CTCTTC	1 cut(s)	267
BstBI	TTCGAA	1 cut(s)	270
BstDEI	CTNAG	1 cut(s)	347
BstDSI	CCRYGG	1 cut(s)	247
BstF5I	GGATG	1 cut(s)	26
BstKTI	GATC	3 cut(s)	42, 82, 232
BstMBI	GATC	3 cut(s)	39, 79, 229
BstMWI	GCNNNNNNNGC	1 cut(s)	243
BstV1I	GCAGC	2 cut(s)	131, 219
BstX2I	RGATCY	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	79
BsuI	GTATCC	1 cut(s)	313
BsuRI	GGCC	4 cut(s)	68, 237, 246, 252
BtgI	CCRYGG	1 cut(s)	247
BtsCI	GGATG	1 cut(s)	26
BtsIMutI	CAGTG	1 cut(s)	334
Cfr10I	RCCGGY	1 cut(s)	353
Cfr13I	GGNCC	2 cut(s)	236, 351
CspAI	ACCGGT	1 cut(s)	353
CspCI	CAANNNNNGTGG	2 cut(s)	205, 240
CviAII	CATG	1 cut(s)	72
CviJI	RGCY	7 cut(s)	68, 122, 210, 237, 246, 252, 265
CviKI_1	RGCY	7 cut(s)	68, 122, 210, 237, 246, 252, 265
DdeI	CTNAG	1 cut(s)	347
DpnI	GATC	3 cut(s)	41, 81, 231
DpnII	GATC	3 cut(s)	39, 79, 229
DraIII	CACNNNGTG	1 cut(s)	146
EaeI	YGGCCR	2 cut(s)	244, 250
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
Eco130I	CCWWGG	1 cut(s)	49
Eco147I	AGGCCT	1 cut(s)	68
Eco47I	GGWCC	1 cut(s)	351
Eco88I	CYCGRG	1 cut(s)	111
EcoT14I	CCWWGG	1 cut(s)	49
ErhI	CCWWGG	1 cut(s)	49
FaeI	CATG	1 cut(s)	75
FaiI	YATR	3 cut(s)	35, 73, 339
FatI	CATG	1 cut(s)	71
FbaI	TGATCA	1 cut(s)	39
Fnu4HI	GCNGC	2 cut(s)	120, 208
FokI	GGATG	1 cut(s)	13
Fsp4HI	GCNGC	2 cut(s)	120, 208
GluI	GCNGC	2 cut(s)	120, 208
HaeIII	GGCC	4 cut(s)	68, 237, 246, 252
HapII	CCGG	1 cut(s)	354
Hin1II	CATG	1 cut(s)	75
HinfI	GANTC	1 cut(s)	13
HpaII	CCGG	1 cut(s)	354
HphI	GGTGA	1 cut(s)	239
Hpy166II	GTNNAC	1 cut(s)	171
Hpy188I	TCNGA	2 cut(s)	202, 348
Hpy188III	TCNNGA	3 cut(s)	57, 83, 146
Hpy8I	GTNNAC	1 cut(s)	171
HpyAV	CCTTC	1 cut(s)	70
HpyCH4III	ACNGT	1 cut(s)	329
HpyCH4IV	ACGT	1 cut(s)	173
HpyCH4V	TGCA	3 cut(s)	119, 207, 259
HpyF10VI	GCNNNNNNNGC	1 cut(s)	243
HpyF3I	CTNAG	1 cut(s)	347
HpySE526I	ACGT	1 cut(s)	173
Hsp92II	CATG	1 cut(s)	75
Ksp22I	TGATCA	1 cut(s)	39
Kzo9I	GATC	3 cut(s)	39, 79, 229
LpnPI	CCDG	6 cut(s)	2, 7, 70, 96, 147, 266
Lsp1109I	GCAGC	2 cut(s)	131, 219
LweI	GCATC	3 cut(s)	35, 106, 246
MaeII	ACGT	1 cut(s)	173
MaeIII	GTNAC	3 cut(s)	101, 124, 138
MalI	GATC	3 cut(s)	41, 81, 231
MboI	GATC	3 cut(s)	39, 79, 229
MboII	GAAGA	2 cut(s)	72, 284
MflI	RGATCY	1 cut(s)	79
MlsI	TGGCCA	1 cut(s)	252
MluCI	AATT	1 cut(s)	312
MluNI	TGGCCA	1 cut(s)	252
MnlI	CCTC	5 cut(s)	16, 79, 142, 268, 342
Mox20I	TGGCCA	1 cut(s)	252
MroXI	GAANNNNTTC	1 cut(s)	266
MscI	TGGCCA	1 cut(s)	252
Msp20I	TGGCCA	1 cut(s)	252
MspA1I	CMGCKG	1 cut(s)	122
MspI	CCGG	1 cut(s)	354
MwoI	GCNNNNNNNGC	1 cut(s)	243
NdeII	GATC	3 cut(s)	39, 79, 229
NlaIII	CATG	1 cut(s)	75
NlaIV	GGNNCC	2 cut(s)	55, 81
NmeAIII	GCCGAG	1 cut(s)	213
NmuCI	GTSAC	2 cut(s)	124, 138
NspV	TTCGAA	1 cut(s)	270
PceI	AGGCCT	1 cut(s)	68
PdmI	GAANNNNTTC	1 cut(s)	266
PfeI	GAWTC	1 cut(s)	13
PinAI	ACCGGT	1 cut(s)	353
PkrI	GCNGC	2 cut(s)	121, 209
PspN4I	GGNNCC	2 cut(s)	55, 81
PspPI	GGNCC	2 cut(s)	236, 351
PsuI	RGATCY	1 cut(s)	79
PvuII	CAGCTG	1 cut(s)	122
SatI	GCNGC	2 cut(s)	120, 208
Sau3AI	GATC	3 cut(s)	39, 79, 229
Sau96I	GGNCC	2 cut(s)	236, 351
SetI	ASST	6 cut(s)	21, 55, 124, 176, 212, 297
SfaNI	GCATC	3 cut(s)	35, 106, 246
SfiI	GGCCNNNNNGGCC	1 cut(s)	243
SfuI	TTCGAA	1 cut(s)	270
SinI	GGWCC	1 cut(s)	351
SmlI	CTYRAG	2 cut(s)	134, 290
SmoI	CTYRAG	2 cut(s)	134, 290
Sse9I	AATT	1 cut(s)	312
SseBI	AGGCCT	1 cut(s)	68
StuI	AGGCCT	1 cut(s)	68
StyI	CCWWGG	1 cut(s)	49
TaaI	ACNGT	1 cut(s)	329
TaiI	ACGT	1 cut(s)	176
TaqI	TCGA	2 cut(s)	11, 270
TasI	AATT	1 cut(s)	312
TfiI	GAWTC	1 cut(s)	13
TscAI	CASTG	1 cut(s)	334
TseFI	GTSAC	2 cut(s)	124, 138
TseI	GCWGC	2 cut(s)	119, 207
Tsp45I	GTSAC	2 cut(s)	124, 138
TspDTI	ATGAA	1 cut(s)	326
TspRI	CASTG	1 cut(s)	334
VpaK11BI	GGWCC	1 cut(s)	351
XmnI	GAANNNNTTC	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.